Wall clock time and date at job start Wed Apr 1 2020 03:44:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50698 * 109.47102 * 2 1 4 4 N 1.33316 * 126.10949 * 270.00616 * 3 2 1 5 5 C 1.30857 * 109.69016 * 179.97438 * 4 3 2 6 6 N 1.34499 * 109.15792 * 359.75748 * 5 4 3 7 7 H 0.97007 * 126.46908 * 180.25038 * 6 5 4 8 8 C 1.36665 * 126.10631 * 89.99799 * 3 2 1 9 9 C 1.46766 * 126.84636 * 359.96561 * 8 3 2 10 10 O 1.21678 * 119.99786 * 256.32653 * 9 8 3 11 11 N 1.34779 * 119.99948 * 76.32183 * 9 8 3 12 12 C 1.48147 * 127.83670 * 175.04551 * 11 9 8 13 13 C 1.54384 * 104.58170 * 140.41038 * 12 11 9 14 14 H 1.09000 * 110.81653 * 263.73735 * 13 12 11 15 15 C 1.55261 * 104.68779 * 23.96366 * 13 12 11 16 16 H 1.09000 * 110.86012 * 239.11252 * 15 13 12 17 17 C 1.48152 * 127.83229 * 355.04921 * 11 9 8 18 18 C 1.53285 * 108.76276 * 116.87416 * 15 13 12 19 19 H 1.08994 * 110.49326 * 181.90140 * 18 15 13 20 20 C 1.53320 * 109.20409 * 60.16977 * 18 15 13 21 21 C 1.52930 * 109.59887 * 299.11022 * 20 18 15 22 22 C 1.52978 * 109.07149 * 141.57104 * 13 12 11 23 23 H 1.09008 * 109.63332 * 66.11437 * 22 13 12 24 24 C 1.53606 * 109.29987 * 305.30612 * 22 13 12 25 25 N 1.47637 * 106.73201 * 300.59528 * 24 22 13 26 26 C 1.36935 * 122.06087 * 179.84287 * 25 24 22 27 27 H 1.08000 * 119.99799 * 179.71148 * 26 25 24 28 28 C 1.38814 * 120.00028 * 359.97438 * 26 25 24 29 29 N 1.31614 * 119.99906 * 359.72302 * 28 26 25 30 30 Si 1.86800 * 119.99792 * 179.72271 * 28 26 25 31 31 H 1.48500 * 109.47465 * 0.02562 * 30 28 26 32 32 H 1.48501 * 109.46835 * 120.00166 * 30 28 26 33 33 H 1.48499 * 109.47265 * 239.99958 * 30 28 26 34 34 H 1.09008 * 109.47098 * 299.99825 * 1 2 3 35 35 H 1.08993 * 109.47421 * 60.00061 * 1 2 3 36 36 H 1.08999 * 109.47135 * 180.02562 * 1 2 3 37 37 H 1.08998 * 109.47031 * 239.99986 * 2 1 3 38 38 H 1.08998 * 109.46732 * 120.00045 * 2 1 3 39 39 H 1.07994 * 125.41922 * 179.97438 * 5 4 3 40 40 H 1.08995 * 110.41521 * 21.63307 * 12 11 9 41 41 H 1.08999 * 110.41605 * 259.18688 * 12 11 9 42 42 H 1.08996 * 110.40689 * 338.29120 * 17 11 9 43 43 H 1.08997 * 110.40686 * 100.60877 * 17 11 9 44 44 H 1.08999 * 109.45293 * 59.14896 * 20 18 15 45 45 H 1.09005 * 109.45181 * 179.07204 * 20 18 15 46 46 H 1.09001 * 109.38396 * 120.81430 * 21 20 18 47 47 H 1.09000 * 109.38017 * 240.48824 * 21 20 18 48 48 H 1.09000 * 110.12385 * 181.22270 * 24 22 13 49 49 H 1.09003 * 109.87118 * 59.83568 * 24 22 13 50 50 H 0.97004 * 120.00078 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2941 2.1616 -1.0770 5 6 2.7120 3.3452 -0.7072 6 7 2.7282 3.4076 0.6363 7 1 2.9924 4.1699 1.1749 8 6 2.3007 2.1801 1.1042 9 6 2.1566 1.7747 2.5073 10 8 1.2111 2.1729 3.1616 11 7 3.0715 0.9612 3.0711 12 6 3.1532 0.5277 4.4854 13 6 3.5679 -0.9577 4.4132 14 1 2.6950 -1.6072 4.4793 15 6 4.2788 -1.1017 3.0404 16 1 3.7742 -1.8403 2.4176 17 6 4.2235 0.2979 2.4171 18 6 5.7407 -1.4948 3.2811 19 1 6.2761 -1.5710 2.3348 20 6 5.7866 -2.8303 4.0328 21 6 5.0867 -2.6825 5.3845 22 6 4.5531 -1.2572 5.5445 23 1 4.0475 -1.1610 6.5055 24 6 5.7306 -0.2740 5.4658 25 7 6.3561 -0.4649 4.1422 26 6 7.4432 0.2640 3.7400 27 1 7.8772 0.0936 2.7658 28 6 7.9908 1.2182 4.5865 29 7 7.4617 1.4261 5.7735 30 14 9.4787 2.2072 4.0408 31 1 9.8786 1.7864 2.6740 32 1 9.1367 3.6523 4.0331 33 1 10.6030 1.9696 4.9813 34 1 -0.3634 0.5138 0.8901 35 1 -0.3634 0.5138 -0.8899 36 1 -0.3633 -1.0277 0.0005 37 1 1.8933 -0.5138 -0.8900 38 1 1.8933 -0.5138 0.8900 39 1 2.9953 4.1457 -1.3744 40 1 2.1824 0.6282 4.9706 41 1 3.9071 1.1074 5.0179 42 1 4.0594 0.2241 1.3421 43 1 5.1439 0.8440 2.6237 44 1 5.2810 -3.5958 3.4441 45 1 6.8248 -3.1220 4.1917 46 1 4.2576 -3.3878 5.4416 47 1 5.7961 -2.8951 6.1843 48 1 6.4523 -0.4894 6.2537 49 1 5.3663 0.7489 5.5620 50 1 7.8446 2.0926 6.3653 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087409216.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:44:13 Heat of formation + Delta-G solvation = 40.555445 kcal Electronic energy + Delta-G solvation = -32648.744330 eV Core-core repulsion = 28676.686307 eV Total energy + Delta-G solvation = -3972.058023 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.22653 -41.92914 -39.94339 -37.07170 -35.31531 -35.16128 -33.30432 -32.99573 -31.81988 -31.56506 -30.00942 -28.44570 -27.14198 -26.05539 -24.66225 -23.69993 -23.34620 -22.52784 -22.01243 -21.80277 -20.24125 -19.40555 -18.88592 -17.93961 -17.35316 -17.29716 -16.91493 -16.51917 -16.14535 -16.00080 -15.84972 -15.75830 -15.25352 -14.85815 -14.60486 -14.50686 -14.33971 -13.90334 -13.85198 -13.52617 -13.32164 -13.28643 -13.12689 -12.90829 -12.65715 -12.53716 -12.41937 -12.40190 -12.19237 -12.02264 -11.98864 -11.79713 -11.68178 -11.60672 -11.23895 -11.03318 -10.96310 -10.73937 -10.63947 -10.48144 -9.78314 -9.47364 -8.75505 -7.70370 -5.06388 0.65130 1.10841 1.43783 1.46998 1.54157 1.79297 2.00917 2.39120 2.52894 3.34709 3.42776 3.52890 3.62052 3.71408 3.81401 3.92658 4.01987 4.19706 4.25847 4.34625 4.39148 4.40847 4.46443 4.49829 4.54343 4.59310 4.60980 4.67563 4.69759 4.84492 4.88065 4.95784 4.98250 5.00658 5.05181 5.12054 5.17942 5.25876 5.30167 5.32661 5.33142 5.44431 5.53934 5.57041 5.61023 5.71816 5.87389 6.00886 6.32343 6.34770 6.42592 6.85378 6.93970 7.24262 7.96120 8.45707 9.31702 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.010814 B = 0.004617 C = 0.003812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2588.531222 B = 6062.434184 C = 7344.340751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.047 4.047 3 C 0.059 3.941 4 N -0.520 5.520 5 C 0.223 3.777 6 N -0.542 5.542 7 H 0.433 0.567 8 C -0.093 4.093 9 C 0.612 3.388 10 O -0.578 6.578 11 N -0.597 5.597 12 C 0.104 3.896 13 C -0.070 4.070 14 H 0.101 0.899 15 C -0.099 4.099 16 H 0.109 0.891 17 C 0.118 3.882 18 C 0.169 3.831 19 H 0.070 0.930 20 C -0.122 4.122 21 C -0.096 4.096 22 C -0.106 4.106 23 H 0.075 0.925 24 C 0.211 3.789 25 N -0.607 5.607 26 C -0.225 4.225 27 H 0.079 0.921 28 C -0.062 4.062 29 N -0.947 5.947 30 Si 0.956 3.044 31 H -0.267 1.267 32 H -0.302 1.302 33 H -0.301 1.301 34 H 0.034 0.966 35 H 0.055 0.945 36 H 0.082 0.918 37 H 0.094 0.906 38 H 0.074 0.926 39 H 0.260 0.740 40 H 0.073 0.927 41 H 0.064 0.936 42 H 0.078 0.922 43 H 0.066 0.934 44 H 0.086 0.914 45 H 0.042 0.958 46 H 0.081 0.919 47 H 0.042 0.958 48 H 0.006 0.994 49 H 0.023 0.977 50 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.335 -4.758 -10.230 15.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.086 4.086 3 C -0.074 4.074 4 N -0.240 5.240 5 C -0.061 4.061 6 N -0.146 5.146 7 H 0.274 0.726 8 C -0.211 4.211 9 C 0.400 3.600 10 O -0.458 6.458 11 N -0.327 5.327 12 C -0.018 4.018 13 C -0.089 4.089 14 H 0.119 0.881 15 C -0.120 4.120 16 H 0.127 0.873 17 C -0.004 4.004 18 C 0.062 3.938 19 H 0.088 0.912 20 C -0.161 4.161 21 C -0.134 4.134 22 C -0.125 4.125 23 H 0.093 0.907 24 C 0.086 3.914 25 N -0.331 5.331 26 C -0.355 4.355 27 H 0.096 0.904 28 C -0.255 4.255 29 N -0.598 5.598 30 Si 0.787 3.213 31 H -0.192 1.192 32 H -0.230 1.230 33 H -0.228 1.228 34 H 0.053 0.947 35 H 0.074 0.926 36 H 0.101 0.899 37 H 0.112 0.888 38 H 0.093 0.907 39 H 0.275 0.725 40 H 0.092 0.908 41 H 0.082 0.918 42 H 0.097 0.903 43 H 0.084 0.916 44 H 0.105 0.895 45 H 0.061 0.939 46 H 0.099 0.901 47 H 0.061 0.939 48 H 0.024 0.976 49 H 0.041 0.959 50 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -10.890 -4.627 -10.645 15.916 hybrid contribution 1.581 2.022 1.529 2.988 sum -9.309 -2.605 -9.115 13.287 Atomic orbital electron populations 1.21640 0.93886 1.02814 1.01078 1.20025 0.96563 0.88318 1.03661 1.21151 1.01919 0.97732 0.86600 1.70021 1.19721 1.03865 1.30367 1.25963 1.00239 0.98213 0.81685 1.43222 1.49775 1.12380 1.09221 0.72632 1.20412 1.16579 0.90092 0.93999 1.16671 0.80904 0.77995 0.84469 1.90787 1.32573 1.57905 1.64578 1.48909 1.26549 1.45813 1.11422 1.22661 1.01085 0.96413 0.81639 1.22113 0.97879 0.93918 0.95004 0.88090 1.22621 0.97814 0.95674 0.95865 0.87260 1.22256 0.87699 0.93489 0.96931 1.20840 0.91152 0.88347 0.93430 0.91211 1.21933 0.99843 0.97551 0.96745 1.21316 0.99649 0.95252 0.97170 1.21682 0.96224 0.96752 0.97867 0.90698 1.20819 0.90231 0.94482 0.85825 1.44790 1.32633 1.41283 1.14374 1.19594 1.04296 1.12130 0.99457 0.90365 1.25360 1.01801 1.01451 0.96868 1.70251 1.42994 1.37187 1.09349 0.85323 0.80178 0.78163 0.77615 1.19168 1.23000 1.22834 0.94725 0.92591 0.89918 0.88769 0.90708 0.72478 0.90806 0.91798 0.90313 0.91586 0.89540 0.93866 0.90062 0.93892 0.97628 0.95932 0.95147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 9.89 71.98 0.71 -2.22 16 2 C -0.05 -1.10 6.18 29.85 0.18 -0.91 16 3 C 0.06 1.64 5.80 41.96 0.24 1.88 16 4 N -0.52 -13.63 11.20 -187.59 -2.10 -15.73 16 5 C 0.22 4.46 13.01 180.33 2.35 6.81 16 6 N -0.54 -12.79 6.19 -188.04 -1.16 -13.95 16 7 H 0.43 8.39 8.96 -92.70 -0.83 7.56 16 8 C -0.09 -2.80 6.03 40.01 0.24 -2.56 16 9 C 0.61 21.47 7.39 86.47 0.64 22.11 16 10 O -0.58 -23.84 17.36 -4.28 -0.07 -23.92 16 11 N -0.60 -20.13 3.32 -814.64 -2.70 -22.83 16 12 C 0.10 3.57 6.37 86.53 0.55 4.12 16 13 C -0.07 -2.03 3.15 -9.55 -0.03 -2.06 16 14 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 15 C -0.10 -2.80 3.19 -9.82 -0.03 -2.83 16 16 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 17 C 0.12 3.82 6.20 86.17 0.53 4.35 16 18 C 0.17 5.63 3.01 44.97 0.14 5.77 16 19 H 0.07 2.30 7.99 -2.39 -0.02 2.28 16 20 C -0.12 -3.49 5.86 30.68 0.18 -3.31 16 21 C -0.10 -2.74 5.65 30.58 0.17 -2.57 16 22 C -0.11 -3.47 2.87 -10.59 -0.03 -3.50 16 23 H 0.07 2.32 8.14 -2.38 -0.02 2.30 16 24 C 0.21 9.42 4.01 86.37 0.35 9.77 16 25 N -0.61 -26.60 1.96 -670.08 -1.31 -27.92 16 26 C -0.22 -11.30 9.23 84.03 0.78 -10.53 16 27 H 0.08 3.80 7.79 -2.91 -0.02 3.78 16 28 C -0.06 -3.32 5.47 84.86 0.46 -2.86 16 29 N -0.95 -54.10 9.77 21.65 0.21 -53.89 16 30 Si 0.96 44.31 29.55 68.60 2.03 46.33 16 31 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 32 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 33 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 34 H 0.03 0.88 8.14 -2.38 -0.02 0.86 16 35 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.07 1.73 7.69 -2.39 -0.02 1.71 16 39 H 0.26 2.34 8.06 -2.91 -0.02 2.31 16 40 H 0.07 2.48 7.85 -2.39 -0.02 2.46 16 41 H 0.06 2.65 5.31 -2.39 -0.01 2.64 16 42 H 0.08 2.31 6.65 -2.39 -0.02 2.30 16 43 H 0.07 2.70 6.30 -2.39 -0.02 2.68 16 44 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 45 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 46 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 47 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 48 H 0.01 0.29 7.24 -2.39 -0.02 0.28 16 49 H 0.02 1.17 4.88 -2.39 -0.01 1.16 16 50 H 0.24 13.62 8.31 -92.71 -0.77 12.85 16 Total: -1.00 -70.22 380.59 2.45 -67.77 By element: Atomic # 1 Polarization: 22.55 SS G_CDS: 0.13 Total: 22.68 kcal Atomic # 6 Polarization: 14.03 SS G_CDS: 7.43 Total: 21.46 kcal Atomic # 7 Polarization: -127.26 SS G_CDS: -7.07 Total: -134.33 kcal Atomic # 8 Polarization: -23.84 SS G_CDS: -0.07 Total: -23.92 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.33 kcal Total: -70.22 2.45 -67.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087409216.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.323 kcal (2) G-P(sol) polarization free energy of solvation -70.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds