Wall clock time and date at job start Wed Apr 1 2020 03:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 109.47205 * 2 1 4 4 N 1.33315 * 126.10746 * 270.11805 * 3 2 1 5 5 C 1.30860 * 109.68508 * 180.27590 * 4 3 2 6 6 N 1.34493 * 109.16246 * 359.76559 * 5 4 3 7 7 H 0.97002 * 126.47212 * 180.02562 * 6 5 4 8 8 C 1.36668 * 126.10522 * 89.99798 * 3 2 1 9 9 C 1.46762 * 126.84736 * 0.02562 * 8 3 2 10 10 O 1.21683 * 119.99502 * 359.70390 * 9 8 3 11 11 N 1.34776 * 120.00382 * 179.71300 * 9 8 3 12 12 C 1.49830 * 125.88492 * 180.02562 * 11 9 8 13 13 C 1.49342 * 102.29583 * 203.21639 * 12 11 9 14 14 H 1.08998 * 105.95508 * 65.48475 * 13 12 11 15 15 C 1.56056 * 101.38453 * 317.14700 * 13 12 11 16 16 H 1.08996 * 109.86898 * 291.27016 * 15 13 12 17 17 C 1.49140 * 125.87687 * 359.96907 * 11 9 8 18 18 C 1.51959 * 103.96871 * 173.83891 * 15 13 12 19 19 H 1.08996 * 113.74975 * 208.56118 * 18 15 13 20 20 C 1.56078 * 103.09895 * 83.98515 * 18 15 13 21 21 C 1.53895 * 106.97275 * 322.24693 * 20 18 15 22 22 C 1.49092 * 130.14232 * 192.56604 * 13 12 11 23 23 H 1.08996 * 113.01256 * 329.46725 * 22 13 12 24 24 C 1.56826 * 103.17611 * 206.75765 * 22 13 12 25 25 N 1.49084 * 103.47055 * 323.28424 * 24 22 13 26 26 C 1.36937 * 122.59010 * 144.11519 * 25 24 22 27 27 H 1.07999 * 119.99655 * 199.91810 * 26 25 24 28 28 C 1.38807 * 120.00016 * 19.92472 * 26 25 24 29 29 N 1.31616 * 120.00397 * 25.99258 * 28 26 25 30 30 Si 1.86799 * 119.99853 * 205.99288 * 28 26 25 31 31 H 1.48493 * 109.47628 * 180.02562 * 30 28 26 32 32 H 1.48498 * 109.47460 * 59.99601 * 30 28 26 33 33 H 1.48507 * 109.47035 * 299.99981 * 30 28 26 34 34 H 1.08993 * 109.47182 * 179.97438 * 1 2 3 35 35 H 1.08998 * 109.47243 * 300.00371 * 1 2 3 36 36 H 1.08997 * 109.47025 * 59.99886 * 1 2 3 37 37 H 1.08998 * 109.47243 * 239.99629 * 2 1 3 38 38 H 1.08999 * 109.47186 * 119.99607 * 2 1 3 39 39 H 1.08000 * 125.41716 * 179.78077 * 5 4 3 40 40 H 1.08999 * 110.83598 * 321.41024 * 12 11 9 41 41 H 1.09000 * 110.84246 * 84.80737 * 12 11 9 42 42 H 1.09003 * 110.29405 * 67.66054 * 17 11 9 43 43 H 1.09001 * 110.37246 * 305.57409 * 17 11 9 44 44 H 1.09001 * 109.95902 * 81.61242 * 20 18 15 45 45 H 1.09001 * 109.95689 * 202.87603 * 20 18 15 46 46 H 1.09009 * 109.54172 * 206.37990 * 21 20 18 47 47 H 1.08996 * 109.53979 * 86.12845 * 21 20 18 48 48 H 1.08993 * 110.73122 * 204.77647 * 24 22 13 49 49 H 1.09003 * 110.58575 * 81.72023 * 24 22 13 50 50 H 0.96997 * 119.99964 * 5.76386 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2921 2.1622 -1.0771 5 6 2.7169 3.3434 -0.7071 6 7 2.7398 3.4035 0.6363 7 1 3.0128 4.1627 1.1749 8 6 2.3008 2.1801 1.1042 9 6 2.1578 1.7743 2.5073 10 8 1.7578 0.6579 2.7800 11 7 2.4693 2.6382 3.4938 12 6 2.3742 2.3640 4.9638 13 6 2.2567 3.7382 5.5366 14 1 1.3044 4.1309 5.1802 15 6 3.3221 4.5129 4.6999 16 1 4.3222 4.1709 4.9659 17 6 2.9692 4.0312 3.3102 18 6 3.1428 5.9600 5.1275 19 1 3.4136 6.6821 4.3572 20 6 3.9974 6.0524 6.4303 21 6 3.8125 4.7235 7.1840 22 6 2.3748 4.2046 6.9478 23 1 2.0546 3.4558 7.6722 24 6 1.4963 5.5035 6.9696 25 7 1.7488 6.1161 5.6341 26 6 0.7774 6.7760 4.9297 27 1 0.8866 6.9208 3.8651 28 6 -0.3475 7.2588 5.5841 29 7 -0.2868 7.5567 6.8647 30 14 -1.9476 7.4857 4.6473 31 1 -2.9892 8.0105 5.5662 32 1 -2.3871 6.1794 4.0944 33 1 -1.7382 8.4482 3.5359 34 1 -0.3633 -1.0276 -0.0005 35 1 -0.3633 0.5139 0.8899 36 1 -0.3633 0.5138 -0.8899 37 1 1.8933 -0.5139 -0.8899 38 1 1.8933 -0.5138 0.8900 39 1 3.0031 4.1429 -1.3744 40 1 1.4877 1.7720 5.1912 41 1 3.2742 1.8658 5.3244 42 1 2.1892 4.6590 2.8793 43 1 3.8531 4.0362 2.6725 44 1 5.0482 6.1931 6.1768 45 1 3.6483 6.8811 7.0462 46 1 3.9715 4.8840 8.2504 47 1 4.5298 3.9913 6.8134 48 1 1.8189 6.1741 7.7660 49 1 0.4419 5.2513 7.0824 50 1 0.5625 7.5190 7.3317 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087409218.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:44:22 Heat of formation + Delta-G solvation = 89.337810 kcal Electronic energy + Delta-G solvation = -32218.711113 eV Core-core repulsion = 28248.768452 eV Total energy + Delta-G solvation = -3969.942661 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.36008 -41.19545 -38.81320 -36.32781 -34.23542 -33.56301 -32.27931 -31.36545 -30.56898 -29.83697 -28.92095 -27.80438 -25.35411 -24.82009 -23.49851 -22.50950 -21.88867 -21.44368 -20.79550 -20.53035 -19.36570 -18.06287 -17.57106 -17.25211 -16.48944 -16.06664 -15.61391 -15.30591 -15.11218 -14.74039 -14.56278 -14.36094 -13.89383 -13.77941 -13.46063 -13.41128 -13.26100 -12.80112 -12.66219 -12.55213 -12.33501 -11.92649 -11.58438 -11.45229 -11.37270 -11.28928 -11.25606 -10.94916 -10.83936 -10.70171 -10.57287 -10.42694 -10.18600 -10.09116 -10.06667 -9.81266 -9.79649 -9.44097 -9.14363 -8.79789 -8.51440 -8.43757 -7.08594 -6.19538 -3.28585 1.27280 2.70477 2.78451 3.00220 3.33661 3.40818 3.46527 3.62582 4.27277 4.37234 4.42798 4.61377 4.71562 4.88725 5.00914 5.04137 5.11744 5.15494 5.21527 5.39137 5.41789 5.45980 5.50639 5.52677 5.53952 5.63445 5.66042 5.70128 5.70879 5.82286 5.95717 6.01094 6.03836 6.04468 6.09887 6.17932 6.23955 6.24999 6.33238 6.35536 6.52257 6.52817 6.61444 6.73055 6.82231 6.96880 7.05835 7.10379 7.46273 7.69462 7.83032 8.13827 8.37180 8.88945 9.67981 10.15118 11.12106 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.011198 B = 0.004030 C = 0.003493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2499.931449 B = 6946.805890 C = 8014.122491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.046 4.046 3 C 0.095 3.905 4 N -0.499 5.499 5 C 0.212 3.788 6 N -0.556 5.556 7 H 0.425 0.575 8 C -0.081 4.081 9 C 0.609 3.391 10 O -0.529 6.529 11 N -0.619 5.619 12 C 0.139 3.861 13 C -0.121 4.121 14 H 0.102 0.898 15 C -0.127 4.127 16 H 0.074 0.926 17 C 0.108 3.892 18 C 0.181 3.819 19 H 0.079 0.921 20 C -0.131 4.131 21 C -0.110 4.110 22 C -0.085 4.085 23 H 0.080 0.920 24 C 0.158 3.842 25 N -0.597 5.597 26 C -0.348 4.348 27 H 0.059 0.941 28 C -0.020 4.020 29 N -0.916 5.916 30 Si 1.057 2.943 31 H -0.284 1.284 32 H -0.294 1.294 33 H -0.294 1.294 34 H 0.058 0.942 35 H 0.056 0.944 36 H 0.052 0.948 37 H 0.073 0.927 38 H 0.092 0.908 39 H 0.214 0.786 40 H 0.079 0.921 41 H 0.063 0.937 42 H 0.076 0.924 43 H 0.058 0.942 44 H 0.052 0.948 45 H 0.069 0.931 46 H 0.055 0.945 47 H 0.054 0.946 48 H 0.033 0.967 49 H 0.066 0.934 50 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.720 -7.932 -7.321 14.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.085 4.085 3 C -0.039 4.039 4 N -0.219 5.219 5 C -0.072 4.072 6 N -0.164 5.164 7 H 0.269 0.731 8 C -0.197 4.197 9 C 0.398 3.602 10 O -0.406 6.406 11 N -0.354 5.354 12 C 0.018 3.982 13 C -0.140 4.140 14 H 0.120 0.880 15 C -0.148 4.148 16 H 0.092 0.908 17 C -0.014 4.014 18 C 0.073 3.927 19 H 0.097 0.903 20 C -0.170 4.170 21 C -0.147 4.147 22 C -0.105 4.105 23 H 0.098 0.902 24 C 0.033 3.967 25 N -0.322 5.322 26 C -0.476 4.476 27 H 0.076 0.924 28 C -0.222 4.222 29 N -0.557 5.557 30 Si 0.887 3.113 31 H -0.210 1.210 32 H -0.222 1.222 33 H -0.221 1.221 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.092 0.908 38 H 0.111 0.889 39 H 0.231 0.769 40 H 0.097 0.903 41 H 0.081 0.919 42 H 0.094 0.906 43 H 0.076 0.924 44 H 0.071 0.929 45 H 0.087 0.913 46 H 0.074 0.926 47 H 0.072 0.928 48 H 0.051 0.949 49 H 0.084 0.916 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.702 -8.357 -7.898 13.839 hybrid contribution 1.998 0.692 0.683 2.222 sum 9.700 -7.664 -7.216 14.314 Atomic orbital electron populations 1.21615 0.94410 1.01635 1.01923 1.20025 0.96235 0.88769 1.03428 1.21012 0.99307 0.97038 0.86577 1.70101 1.18512 1.02773 1.30495 1.25124 1.01752 0.97984 0.82355 1.43971 1.49687 1.13845 1.08943 0.73125 1.20912 1.15608 0.88270 0.94950 1.16453 0.77670 0.84065 0.82057 1.90798 1.47461 1.19677 1.82695 1.49619 1.65273 1.13753 1.06720 1.21114 1.01619 0.97281 0.78194 1.21038 1.03503 0.92823 0.96656 0.87997 1.22780 0.99063 1.00432 0.92555 0.90824 1.21721 0.97721 0.82547 0.99424 1.21235 0.86002 0.91486 0.93935 0.90255 1.22827 0.98523 0.97627 0.98016 1.22057 0.96431 0.96800 0.99438 1.21643 0.96388 0.98398 0.94106 0.90176 1.22298 0.97568 0.89605 0.87224 1.45563 1.04942 1.62882 1.18803 1.19846 1.00979 1.35212 0.91593 0.92361 1.25655 1.02226 0.96706 0.97616 1.70809 1.29671 1.44429 1.10752 0.83626 0.76690 0.76099 0.74871 1.20988 1.22154 1.22085 0.92280 0.92498 0.92920 0.90810 0.88934 0.76947 0.90285 0.91906 0.90610 0.92364 0.92905 0.91251 0.92594 0.92773 0.94925 0.91568 0.91920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.89 37.16 0.37 -1.39 16 2 C -0.05 -0.62 5.93 -27.88 -0.17 -0.78 16 3 C 0.10 1.41 6.40 -82.52 -0.53 0.88 16 4 N -0.50 -6.96 11.20 -10.64 -0.12 -7.08 16 5 C 0.21 2.30 13.01 -90.57 -1.18 1.12 16 6 N -0.56 -6.50 5.69 -10.79 -0.06 -6.56 16 7 H 0.42 4.20 5.16 -40.82 -0.21 3.99 16 8 C -0.08 -1.21 6.90 -82.14 -0.57 -1.77 16 9 C 0.61 10.02 7.85 -12.82 -0.10 9.92 16 10 O -0.53 -9.75 15.16 5.20 0.08 -9.68 16 11 N -0.62 -9.49 3.43 -173.38 -0.59 -10.08 16 12 C 0.14 2.09 6.83 -3.99 -0.03 2.07 16 13 C -0.12 -1.94 2.28 -92.71 -0.21 -2.15 16 14 H 0.10 2.09 6.00 -51.93 -0.31 1.77 16 15 C -0.13 -1.85 2.34 -90.39 -0.21 -2.06 16 16 H 0.07 0.98 6.31 -51.93 -0.33 0.65 16 17 C 0.11 1.47 4.86 -3.46 -0.02 1.46 16 18 C 0.18 3.08 4.42 -65.35 -0.29 2.79 16 19 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 20 C -0.13 -2.00 5.46 -24.62 -0.13 -2.13 16 21 C -0.11 -1.54 5.30 -25.39 -0.13 -1.67 16 22 C -0.09 -1.36 4.25 -89.59 -0.38 -1.74 16 23 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 24 C 0.16 3.24 3.80 -0.54 0.00 3.24 16 25 N -0.60 -12.81 1.71 -157.93 -0.27 -13.08 16 26 C -0.35 -8.74 9.72 -15.06 -0.15 -8.89 16 27 H 0.06 1.47 7.95 -52.49 -0.42 1.05 16 28 C -0.02 -0.52 4.88 -17.43 -0.09 -0.61 16 29 N -0.92 -25.87 12.62 55.49 0.70 -25.17 16 30 Si 1.06 24.40 29.99 -169.99 -5.10 19.30 16 31 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 32 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 33 H -0.29 -6.51 7.11 56.52 0.40 -6.10 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.09 1.32 6.48 -51.93 -0.34 0.98 16 39 H 0.21 1.30 8.06 -52.49 -0.42 0.88 16 40 H 0.08 1.25 8.12 -51.93 -0.42 0.83 16 41 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.08 1.14 7.65 -51.93 -0.40 0.74 16 43 H 0.06 0.64 6.77 -51.93 -0.35 0.29 16 44 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.07 1.21 7.31 -51.93 -0.38 0.83 16 46 H 0.06 0.74 8.14 -51.92 -0.42 0.32 16 47 H 0.05 0.68 6.93 -51.93 -0.36 0.32 16 48 H 0.03 0.71 6.31 -51.93 -0.33 0.38 16 49 H 0.07 1.57 7.22 -51.93 -0.37 1.20 16 50 H 0.27 7.54 6.12 -40.82 -0.25 7.29 16 LS Contribution 374.92 15.07 5.65 5.65 Total: -1.00 -30.93 374.92 -11.01 -41.95 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -7.49 Total: 6.45 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: -3.81 Total: -1.70 kcal Atomic # 7 Polarization: -61.62 SS G_CDS: -0.34 Total: -61.97 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.08 Total: -9.68 kcal Atomic # 14 Polarization: 24.40 SS G_CDS: -5.10 Total: 19.30 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.93 -11.01 -41.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087409218.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.287 kcal (2) G-P(sol) polarization free energy of solvation -30.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds