Wall clock time and date at job start Wed Apr 1 2020 03:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 109.47205 * 2 1 4 4 N 1.33315 * 126.10746 * 270.11805 * 3 2 1 5 5 C 1.30860 * 109.68508 * 180.27590 * 4 3 2 6 6 N 1.34493 * 109.16246 * 359.76559 * 5 4 3 7 7 H 0.97002 * 126.47212 * 180.02562 * 6 5 4 8 8 C 1.36668 * 126.10522 * 89.99798 * 3 2 1 9 9 C 1.46762 * 126.84736 * 0.02562 * 8 3 2 10 10 O 1.21683 * 119.99502 * 359.70390 * 9 8 3 11 11 N 1.34776 * 120.00382 * 179.71300 * 9 8 3 12 12 C 1.49830 * 125.88492 * 180.02562 * 11 9 8 13 13 C 1.49342 * 102.29583 * 203.21639 * 12 11 9 14 14 H 1.08998 * 105.95508 * 65.48475 * 13 12 11 15 15 C 1.56056 * 101.38453 * 317.14700 * 13 12 11 16 16 H 1.08996 * 109.86898 * 291.27016 * 15 13 12 17 17 C 1.49140 * 125.87687 * 359.96907 * 11 9 8 18 18 C 1.51959 * 103.96871 * 173.83891 * 15 13 12 19 19 H 1.08996 * 113.74975 * 208.56118 * 18 15 13 20 20 C 1.56078 * 103.09895 * 83.98515 * 18 15 13 21 21 C 1.53895 * 106.97275 * 322.24693 * 20 18 15 22 22 C 1.49092 * 130.14232 * 192.56604 * 13 12 11 23 23 H 1.08996 * 113.01256 * 329.46725 * 22 13 12 24 24 C 1.56826 * 103.17611 * 206.75765 * 22 13 12 25 25 N 1.49084 * 103.47055 * 323.28424 * 24 22 13 26 26 C 1.36937 * 122.59010 * 144.11519 * 25 24 22 27 27 H 1.07999 * 119.99655 * 199.91810 * 26 25 24 28 28 C 1.38807 * 120.00016 * 19.92472 * 26 25 24 29 29 N 1.31616 * 120.00397 * 25.99258 * 28 26 25 30 30 Si 1.86799 * 119.99853 * 205.99288 * 28 26 25 31 31 H 1.48493 * 109.47628 * 180.02562 * 30 28 26 32 32 H 1.48498 * 109.47460 * 59.99601 * 30 28 26 33 33 H 1.48507 * 109.47035 * 299.99981 * 30 28 26 34 34 H 1.08993 * 109.47182 * 179.97438 * 1 2 3 35 35 H 1.08998 * 109.47243 * 300.00371 * 1 2 3 36 36 H 1.08997 * 109.47025 * 59.99886 * 1 2 3 37 37 H 1.08998 * 109.47243 * 239.99629 * 2 1 3 38 38 H 1.08999 * 109.47186 * 119.99607 * 2 1 3 39 39 H 1.08000 * 125.41716 * 179.78077 * 5 4 3 40 40 H 1.08999 * 110.83598 * 321.41024 * 12 11 9 41 41 H 1.09000 * 110.84246 * 84.80737 * 12 11 9 42 42 H 1.09003 * 110.29405 * 67.66054 * 17 11 9 43 43 H 1.09001 * 110.37246 * 305.57409 * 17 11 9 44 44 H 1.09001 * 109.95902 * 81.61242 * 20 18 15 45 45 H 1.09001 * 109.95689 * 202.87603 * 20 18 15 46 46 H 1.09009 * 109.54172 * 206.37990 * 21 20 18 47 47 H 1.08996 * 109.53979 * 86.12845 * 21 20 18 48 48 H 1.08993 * 110.73122 * 204.77647 * 24 22 13 49 49 H 1.09003 * 110.58575 * 81.72023 * 24 22 13 50 50 H 0.96997 * 119.99964 * 5.76386 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2921 2.1622 -1.0771 5 6 2.7169 3.3434 -0.7071 6 7 2.7398 3.4035 0.6363 7 1 3.0128 4.1627 1.1749 8 6 2.3008 2.1801 1.1042 9 6 2.1578 1.7743 2.5073 10 8 1.7578 0.6579 2.7800 11 7 2.4693 2.6382 3.4938 12 6 2.3742 2.3640 4.9638 13 6 2.2567 3.7382 5.5366 14 1 1.3044 4.1309 5.1802 15 6 3.3221 4.5129 4.6999 16 1 4.3222 4.1709 4.9659 17 6 2.9692 4.0312 3.3102 18 6 3.1428 5.9600 5.1275 19 1 3.4136 6.6821 4.3572 20 6 3.9974 6.0524 6.4303 21 6 3.8125 4.7235 7.1840 22 6 2.3748 4.2046 6.9478 23 1 2.0546 3.4558 7.6722 24 6 1.4963 5.5035 6.9696 25 7 1.7488 6.1161 5.6341 26 6 0.7774 6.7760 4.9297 27 1 0.8866 6.9208 3.8651 28 6 -0.3475 7.2588 5.5841 29 7 -0.2868 7.5567 6.8647 30 14 -1.9476 7.4857 4.6473 31 1 -2.9892 8.0105 5.5662 32 1 -2.3871 6.1794 4.0944 33 1 -1.7382 8.4482 3.5359 34 1 -0.3633 -1.0276 -0.0005 35 1 -0.3633 0.5139 0.8899 36 1 -0.3633 0.5138 -0.8899 37 1 1.8933 -0.5139 -0.8899 38 1 1.8933 -0.5138 0.8900 39 1 3.0031 4.1429 -1.3744 40 1 1.4877 1.7720 5.1912 41 1 3.2742 1.8658 5.3244 42 1 2.1892 4.6590 2.8793 43 1 3.8531 4.0362 2.6725 44 1 5.0482 6.1931 6.1768 45 1 3.6483 6.8811 7.0462 46 1 3.9715 4.8840 8.2504 47 1 4.5298 3.9913 6.8134 48 1 1.8189 6.1741 7.7660 49 1 0.4419 5.2513 7.0824 50 1 0.5625 7.5190 7.3317 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087409218.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:44:21 Heat of formation + Delta-G solvation = 72.530468 kcal Electronic energy + Delta-G solvation = -32219.439934 eV Core-core repulsion = 28248.768452 eV Total energy + Delta-G solvation = -3970.671482 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.37179 -42.50149 -40.07736 -37.64478 -35.49859 -35.09383 -33.36599 -32.69857 -31.76330 -31.53965 -29.99006 -29.06806 -27.02251 -26.10649 -24.60245 -23.57356 -23.46256 -22.68456 -22.00254 -21.80794 -20.41065 -19.72020 -18.79157 -18.63075 -17.68157 -17.25532 -16.85389 -16.70909 -16.34022 -15.98652 -15.72515 -15.64560 -15.51889 -14.92353 -14.88943 -14.65852 -14.40461 -14.21691 -13.98651 -13.87574 -13.35460 -13.26356 -12.94236 -12.85728 -12.80842 -12.60710 -12.45214 -12.43452 -12.20840 -12.12565 -12.01127 -11.93768 -11.63416 -11.52612 -11.37638 -11.07379 -10.97556 -10.75837 -10.61064 -10.45894 -9.98836 -9.50853 -8.91911 -8.23770 -5.27132 0.20882 1.51266 1.57319 1.58793 1.74996 1.79916 2.02162 2.18189 2.60025 3.10496 3.19106 3.30384 3.41612 3.54917 3.70068 3.75807 3.96802 4.01911 4.04925 4.13877 4.18074 4.26471 4.34097 4.37953 4.44147 4.47188 4.48600 4.52419 4.63783 4.69718 4.72572 4.73401 4.79587 4.85774 4.94105 5.02289 5.05680 5.07801 5.10093 5.21120 5.21832 5.27997 5.36115 5.42347 5.48949 5.50420 5.68481 5.78293 6.24102 6.28027 6.39595 6.83191 6.93561 6.98165 7.74786 8.27721 9.07354 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.011198 B = 0.004030 C = 0.003493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2499.931449 B = 6946.805890 C = 8014.122491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.047 4.047 3 C 0.087 3.913 4 N -0.527 5.527 5 C 0.235 3.765 6 N -0.550 5.550 7 H 0.433 0.567 8 C -0.107 4.107 9 C 0.604 3.396 10 O -0.559 6.559 11 N -0.622 5.622 12 C 0.142 3.858 13 C -0.108 4.108 14 H 0.051 0.949 15 C -0.113 4.113 16 H 0.106 0.894 17 C 0.111 3.889 18 C 0.173 3.827 19 H 0.082 0.918 20 C -0.125 4.125 21 C -0.102 4.102 22 C -0.074 4.074 23 H 0.094 0.906 24 C 0.163 3.837 25 N -0.612 5.612 26 C -0.334 4.334 27 H 0.056 0.944 28 C -0.076 4.076 29 N -0.952 5.952 30 Si 1.097 2.903 31 H -0.296 1.296 32 H -0.294 1.294 33 H -0.275 1.275 34 H 0.077 0.923 35 H 0.031 0.969 36 H 0.054 0.946 37 H 0.088 0.912 38 H 0.080 0.920 39 H 0.262 0.738 40 H 0.062 0.938 41 H 0.089 0.911 42 H 0.058 0.942 43 H 0.095 0.905 44 H 0.089 0.911 45 H 0.039 0.961 46 H 0.067 0.933 47 H 0.086 0.914 48 H 0.016 0.984 49 H 0.019 0.981 50 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.682 -8.454 -9.126 17.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.085 4.085 3 C -0.048 4.048 4 N -0.247 5.247 5 C -0.049 4.049 6 N -0.159 5.159 7 H 0.279 0.721 8 C -0.223 4.223 9 C 0.394 3.606 10 O -0.439 6.439 11 N -0.355 5.355 12 C 0.021 3.979 13 C -0.128 4.128 14 H 0.070 0.930 15 C -0.134 4.134 16 H 0.124 0.876 17 C -0.010 4.010 18 C 0.067 3.933 19 H 0.100 0.900 20 C -0.164 4.164 21 C -0.139 4.139 22 C -0.094 4.094 23 H 0.113 0.887 24 C 0.039 3.961 25 N -0.337 5.337 26 C -0.463 4.463 27 H 0.074 0.926 28 C -0.272 4.272 29 N -0.596 5.596 30 Si 0.925 3.075 31 H -0.222 1.222 32 H -0.221 1.221 33 H -0.200 1.200 34 H 0.096 0.904 35 H 0.050 0.950 36 H 0.073 0.927 37 H 0.106 0.894 38 H 0.098 0.902 39 H 0.278 0.722 40 H 0.081 0.919 41 H 0.107 0.893 42 H 0.076 0.924 43 H 0.113 0.887 44 H 0.107 0.893 45 H 0.057 0.943 46 H 0.086 0.914 47 H 0.104 0.896 48 H 0.034 0.966 49 H 0.038 0.962 50 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 10.711 -8.864 -9.714 16.961 hybrid contribution 1.102 0.868 1.155 1.817 sum 11.813 -7.996 -8.559 16.636 Atomic orbital electron populations 1.21552 0.94160 1.02507 1.00667 1.20031 0.96401 0.88620 1.03433 1.21264 0.98966 0.97575 0.87026 1.70130 1.20085 1.04082 1.30433 1.26118 0.98548 0.97909 0.82357 1.43916 1.49447 1.13139 1.09387 0.72127 1.20712 1.17745 0.89783 0.94098 1.16714 0.77223 0.83826 0.82867 1.90771 1.48842 1.20958 1.83301 1.49650 1.65095 1.14184 1.06586 1.21077 1.02189 0.96329 0.78292 1.20852 1.01498 0.93668 0.96734 0.93045 1.22624 1.00016 0.98079 0.92698 0.87568 1.21763 0.98503 0.81289 0.99466 1.21499 0.83624 0.93104 0.95113 0.90018 1.22747 0.99941 0.97344 0.96335 1.22023 0.94936 0.96609 1.00315 1.21575 0.97022 0.96185 0.94614 0.88747 1.22070 0.95850 0.91665 0.86559 1.45729 1.06689 1.62528 1.18797 1.20077 1.01646 1.32912 0.91708 0.92636 1.26607 1.04962 0.97802 0.97871 1.70888 1.29040 1.47842 1.11820 0.83045 0.73944 0.76247 0.74282 1.22205 1.22131 1.20043 0.90418 0.94973 0.92731 0.89394 0.90188 0.72199 0.91915 0.89256 0.92402 0.88683 0.89265 0.94258 0.91448 0.89586 0.96646 0.96212 0.93156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.30 9.89 71.98 0.71 -2.59 16 2 C -0.05 -1.22 5.93 29.85 0.18 -1.04 16 3 C 0.09 2.46 6.40 41.97 0.27 2.73 16 4 N -0.53 -13.51 11.20 -187.59 -2.10 -15.61 16 5 C 0.23 4.29 13.01 180.33 2.35 6.63 16 6 N -0.55 -11.36 5.69 -188.04 -1.07 -12.43 16 7 H 0.43 7.18 5.16 -92.71 -0.48 6.70 16 8 C -0.11 -3.05 6.90 40.01 0.28 -2.77 16 9 C 0.60 19.50 7.85 86.47 0.68 20.18 16 10 O -0.56 -20.81 15.16 -4.29 -0.07 -20.87 16 11 N -0.62 -18.12 3.43 -820.66 -2.82 -20.93 16 12 C 0.14 4.07 6.83 84.56 0.58 4.65 16 13 C -0.11 -3.34 2.28 -12.15 -0.03 -3.37 16 14 H 0.05 2.15 6.00 -2.39 -0.01 2.13 16 15 C -0.11 -2.95 2.34 -10.65 -0.02 -2.97 16 16 H 0.11 2.20 6.31 -2.39 -0.02 2.19 16 17 C 0.11 2.75 4.86 85.30 0.41 3.16 16 18 C 0.17 5.55 4.42 45.20 0.20 5.75 16 19 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 20 C -0.13 -3.46 5.46 31.96 0.17 -3.28 16 21 C -0.10 -2.48 5.30 31.46 0.17 -2.32 16 22 C -0.07 -2.28 4.25 -10.13 -0.04 -2.33 16 23 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 24 C 0.16 6.99 3.80 87.22 0.33 7.33 16 25 N -0.61 -26.74 1.71 -653.56 -1.12 -27.85 16 26 C -0.33 -17.20 9.72 84.03 0.82 -16.38 16 27 H 0.06 2.83 7.95 -2.91 -0.02 2.81 16 28 C -0.08 -4.18 4.88 84.86 0.41 -3.77 16 29 N -0.95 -56.51 12.62 21.65 0.27 -56.24 16 30 Si 1.10 50.99 29.99 68.60 2.06 53.05 16 31 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 32 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 33 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 34 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.08 2.29 6.48 -2.39 -0.02 2.28 16 39 H 0.26 1.85 8.06 -2.91 -0.02 1.82 16 40 H 0.06 2.00 8.12 -2.39 -0.02 1.98 16 41 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 42 H 0.06 1.66 7.65 -2.39 -0.02 1.64 16 43 H 0.10 1.68 6.77 -2.39 -0.02 1.66 16 44 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 45 H 0.04 1.33 7.31 -2.39 -0.02 1.31 16 46 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 47 H 0.09 1.65 6.93 -2.39 -0.02 1.64 16 48 H 0.02 0.71 6.31 -2.39 -0.02 0.70 16 49 H 0.02 1.00 7.22 -2.39 -0.02 0.98 16 50 H 0.26 15.31 6.12 -92.71 -0.57 14.74 16 Total: -1.00 -72.74 374.92 3.31 -69.44 By element: Atomic # 1 Polarization: 21.15 SS G_CDS: 0.69 Total: 21.84 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: 7.46 Total: 9.61 kcal Atomic # 7 Polarization: -126.24 SS G_CDS: -6.83 Total: -133.07 kcal Atomic # 8 Polarization: -20.81 SS G_CDS: -0.07 Total: -20.87 kcal Atomic # 14 Polarization: 50.99 SS G_CDS: 2.06 Total: 53.05 kcal Total: -72.74 3.31 -69.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087409218.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.967 kcal (2) G-P(sol) polarization free energy of solvation -72.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds