Wall clock time and date at job start Wed Apr 1 2020 03:22:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30498 * 125.65176 * 2 1 4 4 C 1.34127 * 109.25872 * 180.29300 * 3 2 1 5 5 C 1.34678 * 108.01616 * 359.71821 * 4 3 2 6 6 N 1.35043 * 125.64971 * 179.81574 * 2 1 3 7 7 C 1.46499 * 126.39568 * 359.97438 * 6 2 1 8 8 C 1.50703 * 109.47651 * 84.71038 * 7 6 2 9 9 O 1.21284 * 119.99529 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00120 * 180.02562 * 8 7 6 11 11 C 1.49343 * 125.94939 * 180.02562 * 10 8 7 12 12 C 1.53960 * 103.03340 * 153.53124 * 11 10 8 13 13 H 1.09000 * 112.73616 * 284.33355 * 12 11 10 14 14 C 1.56205 * 96.89098 * 43.42147 * 12 11 10 15 15 H 1.08994 * 100.33229 * 59.96590 * 14 12 11 16 16 C 1.48027 * 104.18979 * 313.05864 * 14 12 11 17 17 C 1.49340 * 109.00285 * 167.90775 * 14 12 11 18 18 H 1.09002 * 114.66975 * 153.12996 * 17 14 12 19 19 C 1.55605 * 107.79305 * 24.21440 * 17 14 12 20 20 C 1.53810 * 108.82039 * 289.49763 * 19 17 14 21 21 C 1.53313 * 116.59227 * 151.81578 * 12 11 10 22 22 H 1.08994 * 112.87279 * 48.65452 * 21 12 11 23 23 C 1.54469 * 109.31571 * 281.24743 * 21 12 11 24 24 N 1.49475 * 107.62860 * 289.17492 * 23 21 12 25 25 C 1.36934 * 123.95166 * 216.80632 * 24 23 21 26 26 H 1.08007 * 120.00287 * 156.61964 * 25 24 23 27 27 C 1.38817 * 119.99946 * 336.62875 * 25 24 23 28 28 N 1.31618 * 120.00202 * 161.75128 * 27 25 24 29 29 Si 1.86801 * 119.99651 * 341.74542 * 27 25 24 30 30 H 1.48499 * 109.46855 * 85.61162 * 29 27 25 31 31 H 1.48509 * 109.46893 * 205.60670 * 29 27 25 32 32 H 1.48491 * 109.47219 * 325.60594 * 29 27 25 33 33 H 1.08996 * 109.47021 * 270.17808 * 1 2 3 34 34 H 1.08994 * 109.46984 * 30.18015 * 1 2 3 35 35 H 1.08996 * 109.47015 * 150.18123 * 1 2 3 36 36 H 1.07998 * 125.99338 * 179.72640 * 4 3 2 37 37 H 1.07993 * 126.58722 * 180.02562 * 5 4 3 38 38 H 1.09006 * 109.47437 * 324.70703 * 7 6 2 39 39 H 1.09006 * 109.46977 * 204.70849 * 7 6 2 40 40 H 1.09000 * 110.70576 * 35.14194 * 11 10 8 41 41 H 1.09007 * 110.70113 * 271.91091 * 11 10 8 42 42 H 1.09010 * 110.50302 * 273.47231 * 16 14 12 43 43 H 1.09003 * 110.62343 * 150.84419 * 16 14 12 44 44 H 1.09010 * 109.57774 * 49.29784 * 19 17 14 45 45 H 1.08996 * 109.57910 * 169.68813 * 19 17 14 46 46 H 1.08999 * 109.85577 * 154.69400 * 20 19 17 47 47 H 1.08997 * 109.85872 * 275.71887 * 20 19 17 48 48 H 1.08999 * 109.99862 * 46.67350 * 23 21 12 49 49 H 1.09004 * 110.00155 * 167.96777 * 23 21 12 50 50 H 0.97000 * 120.00150 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2677 1.0604 0.0000 4 6 3.5544 0.6819 -0.0065 5 6 3.5926 -0.6644 -0.0043 6 7 2.2941 -1.0973 0.0035 7 6 1.8425 -2.4910 0.0085 8 6 1.5625 -2.9335 -1.4046 9 8 1.7238 -2.1606 -2.3252 10 7 1.1319 -4.1878 -1.6451 11 6 0.8159 -4.7642 -2.9861 12 6 1.0516 -6.2717 -2.7804 13 1 2.1096 -6.5328 -2.7532 14 6 0.3465 -6.3837 -1.3910 15 1 -0.6591 -6.0569 -1.6553 16 6 0.8878 -5.2443 -0.6164 17 6 0.1587 -7.8269 -1.0561 18 1 0.1172 -8.0446 0.0112 19 6 1.2275 -8.6404 -1.8416 20 6 0.8675 -8.6187 -3.3368 21 6 0.2329 -7.2211 -3.6628 22 1 0.2606 -6.9485 -4.7178 23 6 -1.1981 -7.3411 -3.0936 24 7 -1.1155 -8.1228 -1.8222 25 6 -2.0636 -9.0229 -1.4149 26 1 -1.7995 -9.8101 -0.7242 27 6 -3.3642 -8.9238 -1.8900 28 7 -4.1768 -9.9556 -1.8037 29 14 -3.9611 -7.3259 -2.6515 30 1 -3.5982 -7.2979 -4.0912 31 1 -5.4365 -7.2315 -2.5110 32 1 -3.3233 -6.1784 -1.9577 33 1 -0.3633 0.0032 1.0276 34 1 -0.3633 0.8883 -0.5166 35 1 -0.3633 -0.8916 -0.5110 36 1 4.4099 1.3410 -0.0122 37 1 4.4776 -1.2832 -0.0078 38 1 0.9327 -2.5761 0.6029 39 1 2.6188 -3.1229 0.4400 40 1 1.4913 -4.3685 -3.7446 41 1 -0.2227 -4.5697 -3.2542 42 1 1.8211 -5.5241 -0.1275 43 1 0.1608 -4.9003 0.1193 44 1 2.2094 -8.1899 -1.6957 45 1 1.2391 -9.6698 -1.4834 46 1 1.7660 -8.7660 -3.9361 47 1 0.1432 -9.4036 -3.5547 48 1 -1.5894 -6.3517 -2.8570 49 1 -1.8469 -7.8350 -3.8170 50 1 -5.0857 -9.8863 -2.1353 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087412532.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:22:15 Heat of formation + Delta-G solvation = 120.465665 kcal Electronic energy + Delta-G solvation = -31561.447371 eV Core-core repulsion = 27592.854515 eV Total energy + Delta-G solvation = -3968.592856 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.31659 -41.48642 -39.31806 -36.31998 -34.21220 -33.19881 -31.89603 -31.45836 -30.88992 -30.58689 -28.64045 -27.57404 -26.82966 -25.87213 -23.71199 -22.30987 -21.58368 -21.21855 -20.93475 -20.46354 -19.37504 -17.78937 -17.49887 -17.41364 -16.91988 -16.15538 -15.82214 -15.58593 -15.43826 -14.66444 -14.64798 -14.54223 -14.17414 -13.92379 -13.57633 -13.50998 -13.17590 -12.99423 -12.90023 -12.72044 -12.53717 -12.50645 -12.15057 -12.08252 -11.93722 -11.71723 -11.59342 -11.34738 -11.07410 -10.89943 -10.54865 -10.40356 -10.29459 -10.12270 -9.96306 -9.74565 -9.61891 -9.57041 -9.47052 -8.88551 -8.65207 -8.46701 -7.11046 -6.02707 -3.36881 1.75214 2.25934 2.34427 2.80768 3.04039 3.22645 3.35706 3.40677 3.95990 4.26632 4.33003 4.35592 4.39042 4.44313 4.57685 4.60504 4.70697 4.85221 5.10365 5.12146 5.15460 5.27133 5.28977 5.31678 5.35056 5.41969 5.45544 5.53079 5.56485 5.58408 5.70037 5.72178 5.77065 5.85452 5.91543 5.97427 6.07158 6.09151 6.10388 6.24444 6.39345 6.49532 6.58026 6.60768 6.67967 6.78264 6.85332 6.94658 7.21942 7.56926 7.80602 7.96802 8.21566 8.70248 9.58292 10.02500 11.13780 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.017368 B = 0.003000 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.730419 B = 9331.162807 C =10084.316688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.221 3.779 3 N -0.493 5.493 4 C -0.027 4.027 5 C -0.052 4.052 6 N -0.442 5.442 7 C 0.089 3.911 8 C 0.511 3.489 9 O -0.527 6.527 10 N -0.620 5.620 11 C 0.114 3.886 12 C -0.099 4.099 13 H 0.092 0.908 14 C -0.165 4.165 15 H 0.091 0.909 16 C 0.129 3.871 17 C 0.195 3.805 18 H 0.093 0.907 19 C -0.123 4.123 20 C -0.096 4.096 21 C -0.100 4.100 22 H 0.086 0.914 23 C 0.116 3.884 24 N -0.612 5.612 25 C -0.243 4.243 26 H 0.089 0.911 27 C 0.022 3.978 28 N -0.911 5.911 29 Si 0.885 3.115 30 H -0.287 1.287 31 H -0.304 1.304 32 H -0.277 1.277 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.070 0.930 36 H 0.169 0.831 37 H 0.172 0.828 38 H 0.122 0.878 39 H 0.123 0.877 40 H 0.078 0.922 41 H 0.073 0.927 42 H 0.071 0.929 43 H 0.076 0.924 44 H 0.048 0.952 45 H 0.060 0.940 46 H 0.046 0.954 47 H 0.074 0.926 48 H 0.027 0.973 49 H 0.073 0.927 50 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.372 11.214 3.796 18.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.042 4.042 3 N -0.212 5.212 4 C -0.174 4.174 5 C -0.184 4.184 6 N -0.125 5.125 7 C -0.038 4.038 8 C 0.297 3.703 9 O -0.403 6.403 10 N -0.355 5.355 11 C -0.007 4.007 12 C -0.118 4.118 13 H 0.111 0.889 14 C -0.184 4.184 15 H 0.108 0.892 16 C 0.007 3.993 17 C 0.089 3.911 18 H 0.111 0.889 19 C -0.162 4.162 20 C -0.133 4.133 21 C -0.120 4.120 22 H 0.104 0.896 23 C -0.008 4.008 24 N -0.339 5.339 25 C -0.370 4.370 26 H 0.107 0.893 27 C -0.177 4.177 28 N -0.555 5.555 29 Si 0.717 3.283 30 H -0.215 1.215 31 H -0.232 1.232 32 H -0.202 1.202 33 H 0.099 0.901 34 H 0.110 0.890 35 H 0.089 0.911 36 H 0.187 0.813 37 H 0.190 0.810 38 H 0.139 0.861 39 H 0.141 0.859 40 H 0.096 0.904 41 H 0.091 0.909 42 H 0.089 0.911 43 H 0.094 0.906 44 H 0.067 0.933 45 H 0.078 0.922 46 H 0.064 0.936 47 H 0.093 0.907 48 H 0.045 0.955 49 H 0.091 0.909 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 13.893 12.291 3.325 18.845 hybrid contribution -0.162 -0.102 -0.549 0.581 sum 13.731 12.189 2.776 18.569 Atomic orbital electron populations 1.20191 0.85136 1.04254 1.03267 1.23244 0.95617 0.81121 1.04175 1.70243 1.02313 1.28037 1.20656 1.22223 0.94776 0.92659 1.07787 1.22623 0.86669 0.96963 1.12148 1.44871 1.06835 1.05883 1.54957 1.21657 1.04237 0.81687 0.96177 1.20288 0.77979 0.81043 0.91007 1.90792 1.52103 1.51932 1.45484 1.49734 1.65373 1.10836 1.09587 1.22405 1.01044 0.93431 0.83865 1.22910 0.99989 0.92099 0.96791 0.88948 1.21897 1.03800 0.96803 0.95916 0.89153 1.20861 1.00622 0.87335 0.90458 1.20990 0.86665 0.87795 0.95644 0.88936 1.22619 0.97359 1.00468 0.95729 1.22199 0.99106 0.96518 0.95521 1.22612 0.96272 0.95108 0.97978 0.89565 1.22147 0.94319 0.95367 0.88975 1.46592 1.21328 1.48908 1.17066 1.18769 0.87433 1.04410 1.26435 0.89315 1.25149 0.95851 0.97195 0.99476 1.69793 1.07436 1.28770 1.49476 0.87002 0.76908 0.85742 0.78696 1.21470 1.23245 1.20245 0.90081 0.89021 0.91121 0.81344 0.81047 0.86052 0.85908 0.90382 0.90919 0.91115 0.90588 0.93330 0.92154 0.93566 0.90735 0.95539 0.90905 0.92698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.69 10.04 36.01 0.36 -0.33 16 2 C 0.22 2.83 7.88 -155.41 -1.23 1.60 16 3 N -0.49 -7.09 11.25 -10.81 -0.12 -7.22 16 4 C -0.03 -0.33 11.87 -17.81 -0.21 -0.54 16 5 C -0.05 -0.56 11.58 -16.56 -0.19 -0.76 16 6 N -0.44 -5.02 2.24 -115.18 -0.26 -5.28 16 7 C 0.09 0.78 5.38 -5.19 -0.03 0.75 16 8 C 0.51 6.30 7.94 -10.98 -0.09 6.22 16 9 O -0.53 -8.80 16.71 5.55 0.09 -8.71 16 10 N -0.62 -7.29 3.42 -171.11 -0.59 -7.87 16 11 C 0.11 1.47 6.33 -1.96 -0.01 1.45 16 12 C -0.10 -1.25 2.69 -88.24 -0.24 -1.48 16 13 H 0.09 1.08 6.87 -51.93 -0.36 0.73 16 14 C -0.16 -2.21 2.45 -93.12 -0.23 -2.44 16 15 H 0.09 1.52 4.05 -51.93 -0.21 1.31 16 16 C 0.13 1.32 6.44 -4.80 -0.03 1.29 16 17 C 0.19 3.06 4.78 -65.46 -0.31 2.74 16 18 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 19 C -0.12 -1.73 5.59 -24.92 -0.14 -1.87 16 20 C -0.10 -1.42 5.51 -24.18 -0.13 -1.55 16 21 C -0.10 -1.46 4.11 -87.56 -0.36 -1.82 16 22 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 23 C 0.12 2.21 3.22 -1.62 -0.01 2.21 16 24 N -0.61 -12.61 1.98 -158.78 -0.31 -12.93 16 25 C -0.24 -6.20 10.53 -15.06 -0.16 -6.36 16 26 H 0.09 2.44 8.06 -52.48 -0.42 2.02 16 27 C 0.02 0.60 5.41 -17.43 -0.09 0.50 16 28 N -0.91 -26.82 13.97 55.49 0.78 -26.05 16 29 Si 0.89 21.36 24.24 -169.99 -4.12 17.24 16 30 H -0.29 -6.70 6.35 56.52 0.36 -6.34 16 31 H -0.30 -7.63 7.11 56.52 0.40 -7.23 16 32 H -0.28 -6.48 6.50 56.52 0.37 -6.12 16 33 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.07 0.69 7.84 -51.93 -0.41 0.28 16 36 H 0.17 1.56 8.06 -52.49 -0.42 1.14 16 37 H 0.17 1.31 8.06 -52.49 -0.42 0.88 16 38 H 0.12 0.81 7.94 -51.93 -0.41 0.39 16 39 H 0.12 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.08 1.02 8.05 -51.93 -0.42 0.60 16 41 H 0.07 1.02 7.58 -51.92 -0.39 0.63 16 42 H 0.07 0.56 8.14 -51.92 -0.42 0.13 16 43 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.05 0.57 7.06 -51.92 -0.37 0.21 16 45 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 46 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.07 1.33 7.73 -51.93 -0.40 0.93 16 48 H 0.03 0.53 4.06 -51.93 -0.21 0.32 16 49 H 0.07 1.57 5.54 -51.93 -0.29 1.28 16 50 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 377.99 15.07 5.70 5.70 Total: -1.00 -33.98 377.99 -9.68 -43.66 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -7.75 Total: 1.84 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: -3.09 Total: -0.39 kcal Atomic # 7 Polarization: -58.84 SS G_CDS: -0.51 Total: -59.34 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: 0.09 Total: -8.71 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.12 Total: 17.24 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.98 -9.68 -43.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087412532.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.125 kcal (2) G-P(sol) polarization free energy of solvation -33.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.660 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds