Wall clock time and date at job start Wed Apr 1 2020 03:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30498 * 125.65176 * 2 1 4 4 C 1.34127 * 109.25872 * 180.29300 * 3 2 1 5 5 C 1.34678 * 108.01616 * 359.71821 * 4 3 2 6 6 N 1.35043 * 125.64971 * 179.81574 * 2 1 3 7 7 C 1.46499 * 126.39568 * 359.97438 * 6 2 1 8 8 C 1.50703 * 109.47651 * 84.71038 * 7 6 2 9 9 O 1.21284 * 119.99529 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00120 * 180.02562 * 8 7 6 11 11 C 1.49343 * 125.94939 * 180.02562 * 10 8 7 12 12 C 1.53960 * 103.03340 * 153.53124 * 11 10 8 13 13 H 1.09000 * 112.73616 * 284.33355 * 12 11 10 14 14 C 1.56205 * 96.89098 * 43.42147 * 12 11 10 15 15 H 1.08994 * 100.33229 * 59.96590 * 14 12 11 16 16 C 1.48027 * 104.18979 * 313.05864 * 14 12 11 17 17 C 1.49340 * 109.00285 * 167.90775 * 14 12 11 18 18 H 1.09002 * 114.66975 * 153.12996 * 17 14 12 19 19 C 1.55605 * 107.79305 * 24.21440 * 17 14 12 20 20 C 1.53810 * 108.82039 * 289.49763 * 19 17 14 21 21 C 1.53313 * 116.59227 * 151.81578 * 12 11 10 22 22 H 1.08994 * 112.87279 * 48.65452 * 21 12 11 23 23 C 1.54469 * 109.31571 * 281.24743 * 21 12 11 24 24 N 1.49475 * 107.62860 * 289.17492 * 23 21 12 25 25 C 1.36934 * 123.95166 * 216.80632 * 24 23 21 26 26 H 1.08007 * 120.00287 * 156.61964 * 25 24 23 27 27 C 1.38817 * 119.99946 * 336.62875 * 25 24 23 28 28 N 1.31618 * 120.00202 * 161.75128 * 27 25 24 29 29 Si 1.86801 * 119.99651 * 341.74542 * 27 25 24 30 30 H 1.48499 * 109.46855 * 85.61162 * 29 27 25 31 31 H 1.48509 * 109.46893 * 205.60670 * 29 27 25 32 32 H 1.48491 * 109.47219 * 325.60594 * 29 27 25 33 33 H 1.08996 * 109.47021 * 270.17808 * 1 2 3 34 34 H 1.08994 * 109.46984 * 30.18015 * 1 2 3 35 35 H 1.08996 * 109.47015 * 150.18123 * 1 2 3 36 36 H 1.07998 * 125.99338 * 179.72640 * 4 3 2 37 37 H 1.07993 * 126.58722 * 180.02562 * 5 4 3 38 38 H 1.09006 * 109.47437 * 324.70703 * 7 6 2 39 39 H 1.09006 * 109.46977 * 204.70849 * 7 6 2 40 40 H 1.09000 * 110.70576 * 35.14194 * 11 10 8 41 41 H 1.09007 * 110.70113 * 271.91091 * 11 10 8 42 42 H 1.09010 * 110.50302 * 273.47231 * 16 14 12 43 43 H 1.09003 * 110.62343 * 150.84419 * 16 14 12 44 44 H 1.09010 * 109.57774 * 49.29784 * 19 17 14 45 45 H 1.08996 * 109.57910 * 169.68813 * 19 17 14 46 46 H 1.08999 * 109.85577 * 154.69400 * 20 19 17 47 47 H 1.08997 * 109.85872 * 275.71887 * 20 19 17 48 48 H 1.08999 * 109.99862 * 46.67350 * 23 21 12 49 49 H 1.09004 * 110.00155 * 167.96777 * 23 21 12 50 50 H 0.97000 * 120.00150 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2677 1.0604 0.0000 4 6 3.5544 0.6819 -0.0065 5 6 3.5926 -0.6644 -0.0043 6 7 2.2941 -1.0973 0.0035 7 6 1.8425 -2.4910 0.0085 8 6 1.5625 -2.9335 -1.4046 9 8 1.7238 -2.1606 -2.3252 10 7 1.1319 -4.1878 -1.6451 11 6 0.8159 -4.7642 -2.9861 12 6 1.0516 -6.2717 -2.7804 13 1 2.1096 -6.5328 -2.7532 14 6 0.3465 -6.3837 -1.3910 15 1 -0.6591 -6.0569 -1.6553 16 6 0.8878 -5.2443 -0.6164 17 6 0.1587 -7.8269 -1.0561 18 1 0.1172 -8.0446 0.0112 19 6 1.2275 -8.6404 -1.8416 20 6 0.8675 -8.6187 -3.3368 21 6 0.2329 -7.2211 -3.6628 22 1 0.2606 -6.9485 -4.7178 23 6 -1.1981 -7.3411 -3.0936 24 7 -1.1155 -8.1228 -1.8222 25 6 -2.0636 -9.0229 -1.4149 26 1 -1.7995 -9.8101 -0.7242 27 6 -3.3642 -8.9238 -1.8900 28 7 -4.1768 -9.9556 -1.8037 29 14 -3.9611 -7.3259 -2.6515 30 1 -3.5982 -7.2979 -4.0912 31 1 -5.4365 -7.2315 -2.5110 32 1 -3.3233 -6.1784 -1.9577 33 1 -0.3633 0.0032 1.0276 34 1 -0.3633 0.8883 -0.5166 35 1 -0.3633 -0.8916 -0.5110 36 1 4.4099 1.3410 -0.0122 37 1 4.4776 -1.2832 -0.0078 38 1 0.9327 -2.5761 0.6029 39 1 2.6188 -3.1229 0.4400 40 1 1.4913 -4.3685 -3.7446 41 1 -0.2227 -4.5697 -3.2542 42 1 1.8211 -5.5241 -0.1275 43 1 0.1608 -4.9003 0.1193 44 1 2.2094 -8.1899 -1.6957 45 1 1.2391 -9.6698 -1.4834 46 1 1.7660 -8.7660 -3.9361 47 1 0.1432 -9.4036 -3.5547 48 1 -1.5894 -6.3517 -2.8570 49 1 -1.8469 -7.8350 -3.8170 50 1 -5.0857 -9.8863 -2.1353 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087412532.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:22:14 Heat of formation + Delta-G solvation = 99.187223 kcal Electronic energy + Delta-G solvation = -31562.370073 eV Core-core repulsion = 27592.854515 eV Total energy + Delta-G solvation = -3969.515559 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.13546 -42.62778 -40.33752 -37.45335 -35.08125 -34.91689 -32.88009 -32.66675 -32.15891 -31.90342 -29.67131 -28.48659 -27.64990 -27.35147 -24.87754 -23.91843 -22.50090 -22.32877 -22.09479 -21.34789 -20.23354 -19.16069 -18.55181 -18.41139 -18.16039 -17.35166 -17.18286 -16.62631 -16.50388 -15.97858 -15.72514 -15.64361 -15.34272 -14.90509 -14.72141 -14.46533 -14.39222 -13.95615 -13.91472 -13.79742 -13.52305 -13.38940 -13.34380 -13.28152 -13.23492 -13.09215 -12.85213 -12.69648 -12.39973 -12.26035 -11.95760 -11.91189 -11.63979 -11.50621 -11.18698 -11.03152 -10.99521 -10.79065 -10.52801 -10.39960 -9.80773 -9.27674 -8.89382 -8.13356 -5.39793 0.92761 1.26690 1.35620 1.39168 1.43227 1.57799 1.98819 2.17691 2.41674 2.93599 3.08233 3.17077 3.41599 3.57078 3.60844 3.72086 3.77185 3.86698 3.97208 4.07816 4.11984 4.26496 4.27938 4.38974 4.40311 4.46869 4.53705 4.54781 4.62526 4.62944 4.64395 4.76046 4.81273 4.82976 4.88122 4.91924 4.94254 4.96077 5.03955 5.10799 5.26967 5.29651 5.37834 5.45127 5.55807 5.65302 5.76799 5.83462 6.14340 6.17934 6.35335 6.77845 6.91882 7.13114 7.57350 8.11977 9.07602 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.017368 B = 0.003000 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.730419 B = 9331.162807 C =10084.316688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.200 3.800 3 N -0.534 5.534 4 C -0.056 4.056 5 C -0.046 4.046 6 N -0.445 5.445 7 C 0.091 3.909 8 C 0.512 3.488 9 O -0.578 6.578 10 N -0.616 5.616 11 C 0.114 3.886 12 C -0.083 4.083 13 H 0.120 0.880 14 C -0.150 4.150 15 H 0.055 0.945 16 C 0.133 3.867 17 C 0.191 3.809 18 H 0.099 0.901 19 C -0.116 4.116 20 C -0.095 4.095 21 C -0.092 4.092 22 H 0.103 0.897 23 C 0.114 3.886 24 N -0.628 5.628 25 C -0.214 4.214 26 H 0.061 0.939 27 C -0.041 4.041 28 N -0.965 5.965 29 Si 0.942 3.058 30 H -0.281 1.281 31 H -0.320 1.320 32 H -0.265 1.265 33 H 0.102 0.898 34 H 0.085 0.915 35 H 0.070 0.930 36 H 0.185 0.815 37 H 0.206 0.794 38 H 0.147 0.853 39 H 0.163 0.837 40 H 0.077 0.923 41 H 0.054 0.946 42 H 0.112 0.888 43 H 0.091 0.909 44 H 0.090 0.910 45 H 0.047 0.953 46 H 0.077 0.923 47 H 0.032 0.968 48 H 0.023 0.977 49 H 0.040 0.960 50 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.851 12.311 4.859 22.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.063 4.063 3 N -0.254 5.254 4 C -0.203 4.203 5 C -0.178 4.178 6 N -0.128 5.128 7 C -0.034 4.034 8 C 0.300 3.700 9 O -0.457 6.457 10 N -0.351 5.351 11 C -0.008 4.008 12 C -0.101 4.101 13 H 0.138 0.862 14 C -0.170 4.170 15 H 0.073 0.927 16 C 0.012 3.988 17 C 0.087 3.913 18 H 0.117 0.883 19 C -0.155 4.155 20 C -0.133 4.133 21 C -0.112 4.112 22 H 0.121 0.879 23 C -0.010 4.010 24 N -0.355 5.355 25 C -0.343 4.343 26 H 0.078 0.922 27 C -0.235 4.235 28 N -0.613 5.613 29 Si 0.773 3.227 30 H -0.208 1.208 31 H -0.249 1.249 32 H -0.190 1.190 33 H 0.121 0.879 34 H 0.103 0.897 35 H 0.089 0.911 36 H 0.202 0.798 37 H 0.222 0.778 38 H 0.164 0.836 39 H 0.181 0.819 40 H 0.096 0.904 41 H 0.072 0.928 42 H 0.130 0.870 43 H 0.109 0.891 44 H 0.108 0.892 45 H 0.066 0.934 46 H 0.095 0.905 47 H 0.051 0.949 48 H 0.040 0.960 49 H 0.058 0.942 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 17.430 13.403 4.406 22.424 hybrid contribution -1.142 -0.504 -0.880 1.528 sum 16.287 12.899 3.526 21.073 Atomic orbital electron populations 1.20244 0.83876 1.03913 1.04546 1.23673 0.96621 0.81559 1.04422 1.70186 1.03647 1.29607 1.21967 1.22677 0.94682 0.94071 1.08834 1.23173 0.87504 0.96919 1.10206 1.45045 1.06812 1.06603 1.54330 1.21952 1.06815 0.80743 0.93907 1.20872 0.76791 0.80354 0.91967 1.90782 1.54353 1.53190 1.47399 1.49717 1.64834 1.11145 1.09354 1.22281 1.00035 0.93593 0.84920 1.22824 1.00719 0.91306 0.95285 0.86199 1.21654 1.02291 0.95933 0.97129 0.92660 1.20976 1.03017 0.85117 0.89671 1.21225 0.84352 0.89818 0.95874 0.88300 1.22558 0.98554 0.99850 0.94562 1.22175 0.99266 0.95098 0.96725 1.22554 0.93317 0.96077 0.99256 0.87890 1.22097 0.96953 0.94112 0.87801 1.46780 1.21781 1.48141 1.18815 1.18737 0.88130 1.03818 1.23640 0.92173 1.25690 0.96540 0.99569 1.01663 1.69930 1.07686 1.30744 1.52930 0.86065 0.75252 0.82884 0.78495 1.20793 1.24947 1.19005 0.87935 0.89667 0.91106 0.79823 0.77769 0.83570 0.81908 0.90433 0.92797 0.86955 0.89055 0.89182 0.93366 0.90488 0.94882 0.95989 0.94186 0.93367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.23 10.04 71.24 0.72 -0.52 16 2 C 0.20 4.80 7.88 138.13 1.09 5.89 16 3 N -0.53 -14.98 11.25 -188.12 -2.12 -17.10 16 4 C -0.06 -1.29 11.87 83.53 0.99 -0.29 16 5 C -0.05 -0.85 11.58 83.09 0.96 0.11 16 6 N -0.44 -8.68 2.24 -518.32 -1.16 -9.85 16 7 C 0.09 1.15 5.38 85.63 0.46 1.61 16 8 C 0.51 10.68 7.94 87.66 0.70 11.38 16 9 O -0.58 -18.06 16.71 -3.04 -0.05 -18.11 16 10 N -0.62 -11.78 3.42 -813.66 -2.79 -14.57 16 11 C 0.11 2.57 6.33 86.15 0.55 3.11 16 12 C -0.08 -1.73 2.69 -9.25 -0.02 -1.75 16 13 H 0.12 2.00 6.87 -2.39 -0.02 1.99 16 14 C -0.15 -3.44 2.45 -12.41 -0.03 -3.47 16 15 H 0.06 1.71 4.05 -2.39 -0.01 1.70 16 16 C 0.13 1.96 6.44 84.24 0.54 2.50 16 17 C 0.19 5.46 4.78 43.71 0.21 5.66 16 18 H 0.10 2.70 8.14 -2.39 -0.02 2.68 16 19 C -0.12 -2.86 5.59 31.77 0.18 -2.68 16 20 C -0.09 -2.57 5.51 32.24 0.18 -2.39 16 21 C -0.09 -2.48 4.11 -8.81 -0.04 -2.52 16 22 H 0.10 2.45 8.14 -2.39 -0.02 2.44 16 23 C 0.11 4.29 3.22 86.30 0.28 4.57 16 24 N -0.63 -25.62 1.98 -656.27 -1.30 -26.92 16 25 C -0.21 -11.20 10.53 84.04 0.89 -10.32 16 26 H 0.06 3.44 8.06 -2.91 -0.02 3.42 16 27 C -0.04 -2.32 5.41 84.86 0.46 -1.86 16 28 N -0.96 -59.61 13.97 21.65 0.30 -59.31 16 29 Si 0.94 45.84 24.24 68.60 1.66 47.51 16 30 H -0.28 -13.15 6.35 99.48 0.63 -12.52 16 31 H -0.32 -16.24 7.11 99.48 0.71 -15.53 16 32 H -0.27 -12.15 6.50 99.48 0.65 -11.51 16 33 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.07 1.26 7.84 -2.39 -0.02 1.24 16 36 H 0.18 3.21 8.06 -2.91 -0.02 3.18 16 37 H 0.21 2.19 8.06 -2.91 -0.02 2.16 16 38 H 0.15 1.16 7.94 -2.38 -0.02 1.14 16 39 H 0.16 0.78 8.14 -2.38 -0.02 0.76 16 40 H 0.08 1.79 8.05 -2.39 -0.02 1.77 16 41 H 0.05 1.43 7.58 -2.38 -0.02 1.41 16 42 H 0.11 0.87 8.14 -2.38 -0.02 0.85 16 43 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.09 1.54 7.06 -2.38 -0.02 1.53 16 45 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 46 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 47 H 0.03 1.16 7.73 -2.39 -0.02 1.14 16 48 H 0.02 0.87 4.06 -2.39 -0.01 0.86 16 49 H 0.04 1.75 5.54 -2.38 -0.01 1.74 16 50 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -80.73 377.99 3.45 -77.27 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: 0.81 Total: 12.05 kcal Atomic # 6 Polarization: 0.93 SS G_CDS: 8.10 Total: 9.03 kcal Atomic # 7 Polarization: -120.68 SS G_CDS: -7.06 Total: -127.74 kcal Atomic # 8 Polarization: -18.06 SS G_CDS: -0.05 Total: -18.11 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 1.66 Total: 47.51 kcal Total: -80.73 3.45 -77.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087412532.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.458 kcal (2) G-P(sol) polarization free energy of solvation -80.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds