Wall clock time and date at job start Wed Apr 1 2020 03:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30495 * 125.65057 * 2 1 4 4 C 1.34125 * 109.25956 * 179.97438 * 3 2 1 5 5 C 1.34677 * 108.01766 * 0.02562 * 4 3 2 6 6 N 1.35041 * 125.64888 * 179.69846 * 2 1 3 7 7 C 1.46500 * 126.39942 * 359.97438 * 6 2 1 8 8 C 1.50698 * 109.46789 * 85.00512 * 7 6 2 9 9 O 1.21283 * 120.00348 * 359.97438 * 8 7 6 10 10 N 1.34784 * 119.99924 * 180.02562 * 8 7 6 11 11 C 1.49684 * 125.94781 * 179.97438 * 10 8 7 12 12 C 1.51303 * 102.55224 * 204.77408 * 11 10 8 13 13 H 1.09003 * 109.60397 * 71.22557 * 12 11 10 14 14 C 1.56085 * 99.24679 * 316.53137 * 12 11 10 15 15 H 1.09006 * 106.30187 * 295.10541 * 14 12 11 16 16 C 1.49335 * 125.94775 * 359.68525 * 10 8 7 17 17 C 1.50494 * 106.00850 * 181.01758 * 14 12 11 18 18 H 1.09000 * 114.35437 * 210.21115 * 17 14 12 19 19 C 1.56813 * 102.24505 * 85.52654 * 17 14 12 20 20 C 1.54011 * 106.16481 * 324.97973 * 19 17 14 21 21 C 1.51425 * 123.46959 * 202.00706 * 12 11 10 22 22 H 1.08995 * 113.39181 * 320.74184 * 21 12 11 23 23 C 1.56634 * 102.31502 * 196.86936 * 21 12 11 24 24 N 1.49657 * 107.72855 * 338.60240 * 17 14 12 25 25 C 1.36932 * 122.45417 * 250.42961 * 24 17 14 26 26 H 1.07994 * 120.00769 * 19.37341 * 25 24 17 27 27 C 1.38822 * 119.99479 * 199.37558 * 25 24 17 28 28 N 1.31617 * 120.00057 * 10.14519 * 27 25 24 29 29 Si 1.86801 * 119.99657 * 190.14857 * 27 25 24 30 30 H 1.48493 * 109.47160 * 90.00032 * 29 27 25 31 31 H 1.48497 * 109.46654 * 209.99861 * 29 27 25 32 32 H 1.48499 * 109.47127 * 329.99921 * 29 27 25 33 33 H 1.09001 * 109.47381 * 90.02367 * 1 2 3 34 34 H 1.08992 * 109.46919 * 330.02051 * 1 2 3 35 35 H 1.09007 * 109.46876 * 210.01879 * 1 2 3 36 36 H 1.08002 * 125.99562 * 180.02562 * 4 3 2 37 37 H 1.08003 * 126.58826 * 179.97438 * 5 4 3 38 38 H 1.09004 * 109.47244 * 205.00197 * 7 6 2 39 39 H 1.09002 * 109.47254 * 325.00543 * 7 6 2 40 40 H 1.08994 * 110.79188 * 323.04345 * 11 10 8 41 41 H 1.09001 * 110.78862 * 86.32231 * 11 10 8 42 42 H 1.08996 * 110.39928 * 304.30635 * 16 10 8 43 43 H 1.09001 * 110.39509 * 66.71058 * 16 10 8 44 44 H 1.08999 * 110.10776 * 84.14351 * 19 17 14 45 45 H 1.08996 * 110.10761 * 205.82356 * 19 17 14 46 46 H 1.08999 * 109.46129 * 83.39678 * 20 19 17 47 47 H 1.09004 * 109.46467 * 203.36571 * 20 19 17 48 48 H 1.08999 * 110.42202 * 81.08971 * 23 21 12 49 49 H 1.08997 * 110.42700 * 203.43959 * 23 21 12 50 50 H 0.96997 * 119.99704 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2676 1.0604 0.0000 4 6 3.5543 0.6819 0.0006 5 6 3.5926 -0.6643 0.0004 6 7 2.2941 -1.0973 0.0058 7 6 1.8425 -2.4910 0.0136 8 6 1.5695 -2.9385 -1.3992 9 8 1.7353 -2.1689 -2.3219 10 7 1.1401 -4.1937 -1.6375 11 6 0.8291 -4.7758 -2.9810 12 6 -0.1513 -5.8775 -2.6430 13 1 -1.1031 -5.4403 -2.3412 14 6 0.5669 -6.4778 -1.3940 15 1 1.5092 -6.8922 -1.7526 16 6 0.8976 -5.2476 -0.6077 17 6 -0.2871 -7.6301 -0.9381 18 1 -0.2496 -7.8207 0.1345 19 6 0.2362 -8.8065 -1.8333 20 6 0.5933 -8.1826 -3.1954 21 6 -0.4138 -7.0669 -3.5427 22 1 -0.4373 -6.8113 -4.6020 23 6 -1.7651 -7.6216 -2.9775 24 7 -1.6656 -7.4185 -1.4810 25 6 -2.7275 -7.0890 -0.6817 26 1 -2.5560 -6.6709 0.2991 27 6 -4.0247 -7.2926 -1.1323 28 7 -4.2384 -7.9806 -2.2338 29 14 -5.4669 -6.5900 -0.1752 30 1 -5.7731 -5.2248 -0.6728 31 1 -6.6547 -7.4619 -0.3591 32 1 -5.1191 -6.5247 1.2670 33 1 -0.3634 -0.0004 -1.0277 34 1 -0.3633 0.8901 0.5135 35 1 -0.3633 -0.8899 0.5142 36 1 4.4099 1.3411 0.0011 37 1 4.4777 -1.2832 0.0003 38 1 2.6168 -3.1213 0.4512 39 1 0.9299 -2.5739 0.6038 40 1 0.3659 -4.0306 -3.6277 41 1 1.7281 -5.1825 -3.4440 42 1 1.7942 -5.4070 -0.0088 43 1 0.0583 -4.9698 0.0298 44 1 1.1216 -9.2550 -1.3828 45 1 -0.5436 -9.5578 -1.9583 46 1 1.5954 -7.7564 -3.1480 47 1 0.5623 -8.9522 -3.9667 48 1 -2.6051 -7.0472 -3.3682 49 1 -1.8777 -8.6765 -3.2277 50 1 -5.1448 -8.1231 -2.5484 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087412534.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:22:22 Heat of formation + Delta-G solvation = 105.900570 kcal Electronic energy + Delta-G solvation = -31613.474415 eV Core-core repulsion = 27644.249969 eV Total energy + Delta-G solvation = -3969.224446 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.20194 -41.12131 -39.11762 -36.09330 -34.08867 -33.22821 -31.78189 -31.30242 -30.62598 -29.87117 -28.30631 -27.31106 -26.67973 -25.43344 -23.86640 -21.94365 -21.48353 -20.98190 -20.68741 -20.23296 -19.21023 -17.52485 -17.42670 -17.19816 -16.88152 -16.00124 -15.54833 -15.22824 -15.00862 -14.64773 -14.45439 -14.29287 -14.17868 -13.78080 -13.35714 -13.20589 -13.05026 -12.81722 -12.64142 -12.54826 -12.43246 -12.32309 -12.20877 -11.82443 -11.42934 -11.22540 -11.12691 -11.07070 -10.79837 -10.72077 -10.54682 -10.33351 -10.24304 -10.14025 -10.02591 -9.81778 -9.49753 -9.31231 -9.10684 -8.67064 -8.63583 -8.36548 -6.89510 -5.85302 -3.21903 1.87817 2.43920 2.47893 2.98873 3.14212 3.31705 3.37665 3.39954 4.18537 4.36798 4.40154 4.44168 4.62591 4.69538 4.72362 4.82272 5.12247 5.19935 5.25545 5.31857 5.35529 5.36561 5.45147 5.48232 5.54808 5.58421 5.67826 5.70510 5.74198 5.79418 5.81764 5.99393 6.03408 6.07520 6.16276 6.19216 6.21121 6.34753 6.38400 6.49650 6.60401 6.70552 6.80814 6.93448 7.01985 7.05919 7.27151 7.43759 7.48706 7.67345 7.99441 8.06976 8.15292 9.02896 9.67374 10.31960 11.25665 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.012686 B = 0.003332 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2206.541814 B = 8402.248733 C = 9845.593803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.222 3.778 3 N -0.495 5.495 4 C -0.028 4.028 5 C -0.054 4.054 6 N -0.441 5.441 7 C 0.089 3.911 8 C 0.511 3.489 9 O -0.531 6.531 10 N -0.616 5.616 11 C 0.123 3.877 12 C -0.092 4.092 13 H 0.101 0.899 14 C -0.138 4.138 15 H 0.068 0.932 16 C 0.117 3.883 17 C 0.180 3.820 18 H 0.081 0.919 19 C -0.131 4.131 20 C -0.110 4.110 21 C -0.107 4.107 22 H 0.080 0.920 23 C 0.186 3.814 24 N -0.596 5.596 25 C -0.240 4.240 26 H 0.071 0.929 27 C -0.001 4.001 28 N -0.913 5.913 29 Si 0.903 3.097 30 H -0.289 1.289 31 H -0.292 1.292 32 H -0.281 1.281 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.071 0.929 36 H 0.169 0.831 37 H 0.171 0.829 38 H 0.120 0.880 39 H 0.122 0.878 40 H 0.075 0.925 41 H 0.063 0.937 42 H 0.066 0.934 43 H 0.075 0.925 44 H 0.049 0.951 45 H 0.073 0.927 46 H 0.050 0.950 47 H 0.052 0.948 48 H 0.076 0.924 49 H 0.036 0.964 50 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.477 4.545 3.610 14.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.040 4.040 3 N -0.214 5.214 4 C -0.175 4.175 5 C -0.186 4.186 6 N -0.124 5.124 7 C -0.038 4.038 8 C 0.296 3.704 9 O -0.408 6.408 10 N -0.351 5.351 11 C 0.002 3.998 12 C -0.111 4.111 13 H 0.119 0.881 14 C -0.159 4.159 15 H 0.086 0.914 16 C -0.004 4.004 17 C 0.072 3.928 18 H 0.099 0.901 19 C -0.170 4.170 20 C -0.148 4.148 21 C -0.127 4.127 22 H 0.098 0.902 23 C 0.062 3.938 24 N -0.321 5.321 25 C -0.369 4.369 26 H 0.088 0.912 27 C -0.199 4.199 28 N -0.559 5.559 29 Si 0.734 3.266 30 H -0.216 1.216 31 H -0.218 1.218 32 H -0.206 1.206 33 H 0.101 0.899 34 H 0.109 0.891 35 H 0.090 0.910 36 H 0.186 0.814 37 H 0.189 0.811 38 H 0.138 0.862 39 H 0.140 0.860 40 H 0.093 0.907 41 H 0.081 0.919 42 H 0.084 0.916 43 H 0.093 0.907 44 H 0.068 0.932 45 H 0.092 0.908 46 H 0.068 0.932 47 H 0.071 0.929 48 H 0.094 0.906 49 H 0.054 0.946 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 13.049 5.682 3.102 14.566 hybrid contribution -0.311 -0.736 0.436 0.910 sum 12.738 4.945 3.537 14.114 Atomic orbital electron populations 1.20217 0.85061 1.03758 1.03920 1.23255 0.95650 0.81106 1.03971 1.70236 1.02274 1.28057 1.20853 1.22204 0.94786 0.92637 1.07907 1.22602 0.86690 0.96932 1.12334 1.44873 1.06796 1.05973 1.54780 1.21658 1.04138 0.81491 0.96497 1.20230 0.78119 0.81172 0.90837 1.90774 1.52251 1.52425 1.45334 1.49790 1.65016 1.10640 1.09672 1.21786 0.98448 0.96029 0.83549 1.21797 0.99198 0.93979 0.96153 0.88072 1.22417 1.00388 0.95491 0.97594 0.91381 1.21367 1.00297 0.88044 0.90719 1.21162 0.85828 0.89849 0.95972 0.90148 1.23052 0.99837 0.98761 0.95313 1.22045 0.98002 0.97537 0.97199 1.22291 0.99708 0.93069 0.97671 0.90205 1.22353 0.91607 0.98025 0.81785 1.46164 1.02569 1.80911 1.02432 1.19123 0.84547 1.34272 0.98918 0.91151 1.24905 0.97451 0.99302 0.98209 1.69918 1.19908 1.42203 1.23833 0.86271 0.82561 0.78466 0.79336 1.21620 1.21788 1.20648 0.89876 0.89135 0.90978 0.81415 0.81146 0.86172 0.86025 0.90699 0.91861 0.91560 0.90669 0.93225 0.90784 0.93182 0.92875 0.90587 0.94623 0.93636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.80 10.19 36.01 0.37 -0.43 16 2 C 0.22 3.11 7.89 -155.42 -1.23 1.89 16 3 N -0.49 -7.61 11.25 -10.81 -0.12 -7.73 16 4 C -0.03 -0.36 11.87 -17.81 -0.21 -0.58 16 5 C -0.05 -0.64 11.58 -16.56 -0.19 -0.83 16 6 N -0.44 -5.55 2.24 -115.18 -0.26 -5.81 16 7 C 0.09 0.91 5.60 -5.19 -0.03 0.88 16 8 C 0.51 7.11 7.94 -10.98 -0.09 7.02 16 9 O -0.53 -9.64 16.75 5.55 0.09 -9.55 16 10 N -0.62 -8.26 3.43 -171.60 -0.59 -8.85 16 11 C 0.12 1.77 6.74 -3.12 -0.02 1.75 16 12 C -0.09 -1.44 2.29 -90.62 -0.21 -1.65 16 13 H 0.10 1.98 6.95 -51.93 -0.36 1.62 16 14 C -0.14 -1.93 2.17 -91.85 -0.20 -2.13 16 15 H 0.07 0.90 5.29 -51.93 -0.27 0.62 16 16 C 0.12 1.40 6.47 -4.10 -0.03 1.37 16 17 C 0.18 3.01 4.65 -65.36 -0.30 2.70 16 18 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 19 C -0.13 -2.01 5.53 -24.14 -0.13 -2.15 16 20 C -0.11 -1.57 5.22 -25.54 -0.13 -1.71 16 21 C -0.11 -1.72 4.36 -88.79 -0.39 -2.11 16 22 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 23 C 0.19 3.88 4.16 0.66 0.00 3.88 16 24 N -0.60 -12.71 1.97 -156.07 -0.31 -13.02 16 25 C -0.24 -5.86 10.03 -15.06 -0.15 -6.01 16 26 H 0.07 1.68 7.85 -52.49 -0.41 1.27 16 27 C 0.00 -0.03 5.29 -17.43 -0.09 -0.12 16 28 N -0.91 -24.74 10.80 55.49 0.60 -24.14 16 29 Si 0.90 20.64 29.57 -169.99 -5.03 15.61 16 30 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 31 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 32 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 33 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.07 0.68 7.16 -51.92 -0.37 0.31 16 36 H 0.17 1.69 8.06 -52.49 -0.42 1.27 16 37 H 0.17 1.46 8.06 -52.48 -0.42 1.04 16 38 H 0.12 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.12 1.03 7.21 -51.93 -0.37 0.65 16 40 H 0.07 1.17 8.09 -51.93 -0.42 0.75 16 41 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.07 1.33 7.14 -51.93 -0.37 0.96 16 46 H 0.05 0.64 6.51 -51.93 -0.34 0.31 16 47 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 48 H 0.08 1.84 6.73 -51.93 -0.35 1.49 16 49 H 0.04 0.81 7.12 -51.93 -0.37 0.44 16 50 H 0.25 6.78 8.31 -40.82 -0.34 6.44 16 LS Contribution 385.19 15.07 5.80 5.80 Total: -1.00 -31.80 385.19 -10.69 -42.48 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -7.85 Total: 3.41 kcal Atomic # 6 Polarization: 4.83 SS G_CDS: -3.03 Total: 1.80 kcal Atomic # 7 Polarization: -58.88 SS G_CDS: -0.68 Total: -59.55 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: 0.09 Total: -9.55 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.03 Total: 15.61 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.80 -10.69 -42.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087412534.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.382 kcal (2) G-P(sol) polarization free energy of solvation -31.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds