Wall clock time and date at job start Wed Apr 1 2020 03:34:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50700 * 109.46832 * 2 1 4 4 N 1.31930 * 120.17007 * 262.69221 * 3 2 1 5 5 N 1.28271 * 122.32392 * 179.97438 * 4 3 2 6 6 C 1.31924 * 122.51747 * 359.97438 * 5 4 3 7 7 C 1.50704 * 120.01514 * 180.02562 * 6 5 4 8 8 C 1.38499 * 119.96954 * 359.72158 * 6 5 4 9 9 C 1.39719 * 120.17529 * 82.67254 * 3 2 1 10 10 C 1.48141 * 121.14370 * 0.02562 * 9 3 2 11 11 O 1.21516 * 119.99757 * 44.10009 * 10 9 3 12 12 N 1.34771 * 119.99907 * 224.09940 * 10 9 3 13 13 C 1.48927 * 125.44661 * 185.37886 * 12 10 9 14 14 C 1.55414 * 106.06176 * 178.83533 * 13 12 10 15 15 H 1.09005 * 112.45034 * 145.55925 * 14 13 12 16 16 C 1.53090 * 106.23126 * 268.58816 * 14 13 12 17 17 C 1.52746 * 110.93389 * 164.37508 * 16 14 13 18 18 N 1.47242 * 107.70670 * 302.04961 * 17 16 14 19 19 C 1.36938 * 121.39026 * 238.33371 * 18 17 16 20 20 H 1.08004 * 119.99624 * 26.93840 * 19 18 17 21 21 C 1.38804 * 119.99982 * 206.93011 * 19 18 17 22 22 N 1.31621 * 120.00173 * 16.13716 * 21 19 18 23 23 Si 1.86804 * 119.99877 * 196.13162 * 21 19 18 24 24 H 1.48503 * 109.47147 * 179.97438 * 23 21 19 25 25 H 1.48492 * 109.47451 * 300.00248 * 23 21 19 26 26 H 1.48505 * 109.46926 * 60.00819 * 23 21 19 27 27 C 1.46705 * 117.21395 * 58.60669 * 18 17 16 28 28 C 1.50084 * 111.15816 * 308.00466 * 27 18 17 29 29 H 1.09006 * 108.94939 * 167.24481 * 28 27 18 30 30 C 1.47850 * 125.65420 * 5.40233 * 12 10 9 31 31 H 1.09000 * 109.47272 * 59.99715 * 1 2 3 32 32 H 1.09001 * 109.46680 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.46990 * 299.99938 * 1 2 3 34 34 H 1.08997 * 109.46990 * 240.00062 * 2 1 3 35 35 H 1.08995 * 109.47176 * 119.99554 * 2 1 3 36 36 H 1.08999 * 109.47199 * 90.00010 * 7 6 5 37 37 H 1.09000 * 109.47155 * 210.00263 * 7 6 5 38 38 H 1.08996 * 109.46964 * 330.00325 * 7 6 5 39 39 H 1.08001 * 121.09180 * 180.30806 * 8 6 5 40 40 H 1.08998 * 110.53843 * 59.66443 * 13 12 10 41 41 H 1.08998 * 110.24625 * 297.83864 * 13 12 10 42 42 H 1.09003 * 109.18326 * 44.00104 * 16 14 13 43 43 H 1.08995 * 109.14449 * 284.72567 * 16 14 13 44 44 H 1.09000 * 109.81595 * 182.49808 * 17 16 14 45 45 H 1.09000 * 109.81230 * 61.59816 * 17 16 14 46 46 H 0.96997 * 120.00369 * 179.97438 * 22 21 19 47 47 H 1.08999 * 109.12551 * 68.03463 * 27 18 17 48 48 H 1.09003 * 109.11803 * 187.12093 * 27 18 17 49 49 H 1.09000 * 110.52254 * 38.02181 * 30 12 10 50 50 H 1.08998 * 110.64257 * 275.33464 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.3901 1.9976 -1.1313 5 7 2.8226 3.2043 -1.1792 6 6 2.9417 3.9582 -0.1032 7 6 3.4559 5.3695 -0.2247 8 6 2.5879 3.4541 1.1374 9 6 2.1211 2.1343 1.1980 10 6 1.7284 1.5191 2.4871 11 8 2.0752 0.3843 2.7493 12 7 0.9867 2.2179 3.3690 13 6 0.6203 1.7649 4.7396 14 6 -0.2076 2.9207 5.3675 15 1 -0.9932 2.5577 6.0302 16 6 0.7952 3.8174 6.0983 17 6 0.1757 5.1746 6.4261 18 7 -0.2635 5.7841 5.1598 19 6 0.2119 7.0017 4.7516 20 1 1.1857 7.3376 5.0761 21 6 -0.5578 7.8041 3.9207 22 7 -1.8438 7.5623 3.7789 23 14 0.2316 9.2274 3.0037 24 1 -0.7970 9.9229 2.1892 25 1 0.8185 10.1803 3.9796 26 1 1.3010 8.7099 2.1126 27 6 -1.2362 5.0351 4.3566 28 6 -0.7747 3.6265 4.1217 29 1 -1.6064 3.0426 3.7271 30 6 0.4040 3.5564 3.1352 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5137 0.8900 36 1 2.6187 6.0488 -0.3851 37 1 3.9779 5.6462 0.6914 38 1 4.1431 5.4344 -1.0682 39 1 2.6733 4.0569 2.0294 40 1 1.5155 1.5826 5.3342 41 1 0.0159 0.8593 4.6887 42 1 1.6700 3.9664 5.4653 43 1 1.1016 3.3305 7.0240 44 1 0.9176 5.8132 6.9057 45 1 -0.6800 5.0400 7.0877 46 1 -2.3817 8.1232 3.1985 47 1 -2.1901 5.0095 4.8835 48 1 -1.3717 5.5384 3.3993 49 1 0.0488 3.6446 2.1085 50 1 1.1329 4.3365 3.3548 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088018346.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:34:07 Heat of formation + Delta-G solvation = 26.976253 kcal Electronic energy + Delta-G solvation = -32014.552497 eV Core-core repulsion = 28041.905636 eV Total energy + Delta-G solvation = -3972.646861 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.62148 -41.29332 -39.70274 -36.96947 -36.17410 -35.04388 -34.26414 -32.87532 -32.36601 -31.95615 -29.24687 -28.80732 -27.48185 -26.53681 -25.74042 -24.62825 -23.31551 -23.13850 -22.68173 -20.80141 -20.05935 -18.98495 -18.66761 -18.25960 -17.31719 -17.18096 -16.87501 -16.40903 -16.27974 -15.80993 -15.41441 -15.31523 -15.12617 -14.96526 -14.82159 -14.56798 -14.42317 -14.19787 -13.97932 -13.78881 -13.55654 -13.38698 -13.30652 -13.25857 -12.89228 -12.80412 -12.76768 -12.45850 -12.30746 -12.20186 -12.08276 -12.01009 -11.94751 -11.66722 -11.54007 -11.35656 -11.03933 -11.01403 -10.68948 -10.62436 -10.49606 -9.81747 -8.62338 -7.82296 -5.25725 -0.79111 -0.32946 1.35038 1.51388 1.53288 1.59036 1.64967 2.29349 2.55451 2.75470 2.97548 3.16394 3.30679 3.34163 3.56050 3.58382 3.68893 3.74898 3.88600 3.92076 4.12007 4.19919 4.23241 4.25988 4.34950 4.40765 4.51710 4.56770 4.62296 4.65628 4.66140 4.72545 4.81292 4.86808 4.86967 4.90889 4.95516 5.02795 5.10490 5.12106 5.15624 5.18688 5.19134 5.22715 5.32761 5.36417 5.60501 5.69353 5.78633 6.22379 6.43125 6.77761 7.20404 7.47300 7.91210 8.45484 9.23881 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.009953 B = 0.004661 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2812.466228 B = 6006.202590 C = 7833.760905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.082 4.082 3 C 0.105 3.895 4 N -0.259 5.259 5 N -0.251 5.251 6 C 0.065 3.935 7 C -0.101 4.101 8 C -0.076 4.076 9 C -0.129 4.129 10 C 0.583 3.417 11 O -0.549 6.549 12 N -0.603 5.603 13 C 0.116 3.884 14 C -0.078 4.078 15 H 0.111 0.889 16 C -0.117 4.117 17 C 0.137 3.863 18 N -0.604 5.604 19 C -0.250 4.250 20 H 0.068 0.932 21 C -0.044 4.044 22 N -0.934 5.934 23 Si 0.952 3.048 24 H -0.302 1.302 25 H -0.281 1.281 26 H -0.268 1.268 27 C 0.189 3.811 28 C -0.106 4.106 29 H 0.076 0.924 30 C 0.121 3.879 31 H 0.056 0.944 32 H 0.089 0.911 33 H 0.039 0.961 34 H 0.099 0.901 35 H 0.101 0.899 36 H 0.090 0.910 37 H 0.099 0.901 38 H 0.094 0.906 39 H 0.169 0.831 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.051 0.949 43 H 0.083 0.917 44 H 0.053 0.947 45 H 0.021 0.979 46 H 0.248 0.752 47 H -0.003 1.003 48 H 0.061 0.939 49 H 0.061 0.939 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.371 -11.305 -1.820 13.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.121 4.121 3 C -0.041 4.041 4 N -0.100 5.100 5 N -0.093 5.093 6 C -0.080 4.080 7 C -0.159 4.159 8 C -0.105 4.105 9 C -0.143 4.143 10 C 0.370 3.630 11 O -0.429 6.429 12 N -0.335 5.335 13 C -0.005 4.005 14 C -0.097 4.097 15 H 0.129 0.871 16 C -0.156 4.156 17 C 0.012 3.988 18 N -0.327 5.327 19 C -0.380 4.380 20 H 0.086 0.914 21 C -0.239 4.239 22 N -0.581 5.581 23 Si 0.780 3.220 24 H -0.229 1.229 25 H -0.207 1.207 26 H -0.194 1.194 27 C 0.063 3.937 28 C -0.127 4.127 29 H 0.094 0.906 30 C -0.001 4.001 31 H 0.075 0.925 32 H 0.108 0.892 33 H 0.058 0.942 34 H 0.118 0.882 35 H 0.119 0.881 36 H 0.109 0.891 37 H 0.118 0.882 38 H 0.113 0.887 39 H 0.187 0.813 40 H 0.100 0.900 41 H 0.097 0.903 42 H 0.070 0.930 43 H 0.101 0.899 44 H 0.072 0.928 45 H 0.039 0.961 46 H 0.057 0.943 47 H 0.015 0.985 48 H 0.080 0.920 49 H 0.080 0.920 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 6.685 -11.963 -3.467 14.136 hybrid contribution -0.254 1.393 0.950 1.705 sum 6.431 -10.570 -2.517 12.626 Atomic orbital electron populations 1.21646 0.92836 1.03684 1.01226 1.20752 0.97428 0.88247 1.05693 1.23246 0.93242 0.99114 0.88469 1.72956 1.08750 1.03964 1.24281 1.72747 1.09181 0.99551 1.27869 1.23292 0.95481 0.99833 0.89406 1.20844 1.02545 0.86974 1.05578 1.22838 0.93571 0.93518 1.00623 1.21072 1.02221 0.95555 0.95447 1.17513 0.78277 0.84649 0.82562 1.90720 1.56625 1.17888 1.77650 1.49044 1.49818 1.19122 1.15506 1.22791 0.99652 0.97605 0.80418 1.22169 0.97566 0.93908 0.96050 0.87119 1.21916 0.97481 0.95901 1.00263 1.21057 0.96680 0.93427 0.87680 1.44250 1.50806 1.18417 1.19254 1.19372 0.98259 0.94125 1.26223 0.91401 1.25620 0.95083 0.99920 1.03285 1.70137 1.05293 1.41605 1.41058 0.85578 0.77575 0.79913 0.78897 1.22888 1.20698 1.19353 1.19675 0.89677 0.87951 0.96428 1.21824 0.96690 0.98588 0.95570 0.90615 1.22239 0.95893 0.82880 0.99054 0.92520 0.89242 0.94194 0.88213 0.88117 0.89148 0.88206 0.88704 0.81331 0.89996 0.90280 0.93035 0.89899 0.92794 0.96086 0.94322 0.98458 0.92044 0.92014 0.90565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 9.89 71.98 0.71 -2.24 16 2 C -0.08 -1.99 5.72 29.85 0.17 -1.82 16 3 C 0.10 3.02 6.16 42.90 0.26 3.28 16 4 N -0.26 -8.06 11.42 -46.95 -0.54 -8.60 16 5 N -0.25 -7.67 11.41 -47.69 -0.54 -8.21 16 6 C 0.06 1.70 6.86 42.61 0.29 2.00 16 7 C -0.10 -2.00 10.19 71.24 0.73 -1.28 16 8 C -0.08 -2.01 8.27 22.79 0.19 -1.82 16 9 C -0.13 -3.68 5.26 -19.83 -0.10 -3.78 16 10 C 0.58 17.03 6.73 86.87 0.58 17.61 16 11 O -0.55 -17.90 15.05 -3.77 -0.06 -17.96 16 12 N -0.60 -16.40 3.38 -808.77 -2.73 -19.13 16 13 C 0.12 2.74 6.31 86.74 0.55 3.29 16 14 C -0.08 -1.97 3.58 -9.59 -0.03 -2.00 16 15 H 0.11 2.44 8.14 -2.38 -0.02 2.42 16 16 C -0.12 -3.12 4.78 30.54 0.15 -2.98 16 17 C 0.14 4.79 6.52 86.15 0.56 5.35 16 18 N -0.60 -26.16 2.83 -705.53 -2.00 -28.15 16 19 C -0.25 -12.16 9.68 84.03 0.81 -11.35 16 20 H 0.07 3.23 7.88 -2.91 -0.02 3.21 16 21 C -0.04 -2.21 4.97 84.86 0.42 -1.79 16 22 N -0.93 -51.13 11.10 21.65 0.24 -50.89 16 23 Si 0.95 41.00 29.58 68.60 2.03 43.03 16 24 H -0.30 -13.53 7.11 99.48 0.71 -12.82 16 25 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 26 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 27 C 0.19 7.86 4.67 85.40 0.40 8.26 16 28 C -0.11 -3.29 2.82 -11.10 -0.03 -3.32 16 29 H 0.08 2.22 8.14 -2.38 -0.02 2.20 16 30 C 0.12 3.61 4.33 86.41 0.37 3.98 16 31 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.04 0.96 7.77 -2.39 -0.02 0.94 16 34 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.10 2.62 5.77 -2.39 -0.01 2.61 16 36 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.10 1.63 8.09 -2.39 -0.02 1.61 16 38 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.17 4.02 6.67 -2.91 -0.02 4.00 16 40 H 0.08 1.83 7.74 -2.39 -0.02 1.81 16 41 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.05 1.48 7.11 -2.39 -0.02 1.47 16 43 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 44 H 0.05 1.88 7.97 -2.39 -0.02 1.86 16 45 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 46 H 0.25 13.40 8.31 -92.71 -0.77 12.63 16 47 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 48 H 0.06 2.97 5.98 -2.39 -0.01 2.96 16 49 H 0.06 1.89 7.61 -2.39 -0.02 1.88 16 50 H 0.08 2.48 6.55 -2.39 -0.02 2.47 16 Total: -1.00 -61.66 389.83 3.37 -58.28 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: 0.94 Total: 20.23 kcal Atomic # 6 Polarization: 5.37 SS G_CDS: 6.03 Total: 11.40 kcal Atomic # 7 Polarization: -109.41 SS G_CDS: -5.57 Total: -114.98 kcal Atomic # 8 Polarization: -17.90 SS G_CDS: -0.06 Total: -17.96 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 2.03 Total: 43.03 kcal Total: -61.66 3.37 -58.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088018346.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.257 kcal (2) G-P(sol) polarization free energy of solvation -61.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds