Wall clock time and date at job start Wed Apr 1 2020 03:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50698 * 109.47249 * 2 1 4 4 C 1.38542 * 120.01306 * 124.99834 * 3 2 1 5 5 C 1.40074 * 117.81983 * 179.72953 * 4 3 2 6 6 C 1.48137 * 121.15092 * 180.23045 * 5 4 3 7 7 O 1.21514 * 120.00360 * 222.81105 * 6 5 4 8 8 N 1.34773 * 119.99767 * 42.81195 * 6 5 4 9 9 C 1.47382 * 125.74038 * 185.43221 * 8 6 5 10 10 C 1.55419 * 106.74037 * 179.02610 * 9 8 6 11 11 H 1.08996 * 112.75932 * 147.11848 * 10 9 8 12 12 C 1.52908 * 106.57126 * 270.99560 * 10 9 8 13 13 C 1.51573 * 111.66861 * 169.88638 * 12 10 9 14 14 N 1.44354 * 113.01034 * 320.12096 * 13 12 10 15 15 C 1.36932 * 116.42235 * 188.02577 * 14 13 12 16 16 H 1.08007 * 119.99677 * 144.77632 * 15 14 13 17 17 C 1.38807 * 120.00473 * 324.77981 * 15 14 13 18 18 N 1.31624 * 119.99695 * 359.71671 * 17 15 14 19 19 Si 1.86791 * 120.00376 * 179.71685 * 17 15 14 20 20 H 1.48499 * 109.47526 * 59.99779 * 19 17 15 21 21 H 1.48508 * 109.47395 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47137 * 300.00046 * 19 17 15 23 23 C 1.43975 * 127.14868 * 8.00313 * 14 13 12 24 24 C 1.49781 * 116.30283 * 2.91760 * 23 14 13 25 25 H 1.08998 * 109.26872 * 141.36652 * 24 23 14 26 26 C 1.47936 * 125.74375 * 5.12007 * 8 6 5 27 27 C 1.39766 * 117.70430 * 0.25528 * 5 4 3 28 28 C 1.50706 * 120.17486 * 179.97438 * 27 5 4 29 29 N 1.31897 * 119.65960 * 359.97438 * 27 5 4 30 30 N 1.28282 * 122.32228 * 0.02562 * 29 27 5 31 31 H 1.09004 * 109.47077 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47124 * 299.99785 * 1 2 3 33 33 H 1.09001 * 109.46960 * 59.99824 * 1 2 3 34 34 H 1.09004 * 109.46465 * 240.00259 * 2 1 3 35 35 H 1.09000 * 109.46885 * 120.00726 * 2 1 3 36 36 H 1.08002 * 121.09667 * 0.02562 * 4 3 2 37 37 H 1.08997 * 110.00226 * 298.34202 * 9 8 6 38 38 H 1.09002 * 110.00603 * 59.70642 * 9 8 6 39 39 H 1.09001 * 109.04034 * 290.45167 * 12 10 9 40 40 H 1.09006 * 109.04041 * 49.39619 * 12 10 9 41 41 H 1.08994 * 108.77203 * 81.02737 * 13 12 10 42 42 H 1.08995 * 108.77501 * 199.32868 * 13 12 10 43 43 H 0.96999 * 120.00298 * 179.97438 * 18 17 15 44 44 H 1.09006 * 108.11433 * 124.67252 * 23 14 13 45 45 H 1.09000 * 108.11580 * 241.33556 * 23 14 13 46 46 H 1.09001 * 110.56681 * 274.18713 * 26 8 6 47 47 H 1.09002 * 110.56627 * 37.03401 * 26 8 6 48 48 H 1.08995 * 109.47151 * 82.91616 * 28 27 5 49 49 H 1.08998 * 109.47177 * 202.91940 * 28 27 5 50 50 H 1.08999 * 109.46539 * 322.91928 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.9121 1.8448 0.9827 5 6 3.3542 3.1730 0.9355 6 6 4.2991 3.7026 1.9460 7 8 4.1231 4.8063 2.4229 8 7 5.3540 2.9602 2.3365 9 6 6.3041 3.3106 3.4073 10 6 7.3227 2.1406 3.5026 11 1 8.3208 2.4727 3.7879 12 6 6.7371 1.1320 4.4915 13 6 7.5138 -0.1696 4.4892 14 7 7.9208 -0.5816 3.1669 15 6 8.4769 -1.8284 3.0614 16 1 8.2934 -2.4290 2.1826 17 6 9.2766 -2.3206 4.0837 18 7 9.5048 -1.5865 5.1521 19 14 10.0288 -4.0246 3.9432 20 1 10.9033 -4.0824 2.7443 21 1 10.8345 -4.3117 5.1572 22 1 8.9473 -5.0342 3.8160 23 6 7.8057 0.1741 1.9469 24 6 7.2591 1.5627 2.0753 25 1 7.7964 2.2250 1.3965 26 6 5.7493 1.6534 1.7668 27 6 2.8728 3.9818 -0.0978 28 6 3.3115 5.4198 -0.2013 29 7 2.0324 3.4799 -0.9818 30 7 1.6314 2.2624 -0.9328 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 1.8933 -0.5138 -0.8901 35 1 1.8933 -0.5140 0.8899 36 1 3.2498 1.1719 1.7571 37 1 6.8221 4.2366 3.1579 38 1 5.7748 3.4222 4.3537 39 1 6.7634 1.5601 5.4935 40 1 5.7015 0.9274 4.2195 41 1 8.4029 -0.0486 5.1080 42 1 6.8896 -0.9514 4.9218 43 1 10.0633 -1.9305 5.8667 44 1 8.7953 0.2402 1.4945 45 1 7.1603 -0.3794 1.2649 46 1 5.2071 0.8433 2.2545 47 1 5.5771 1.6371 0.6906 48 1 4.2745 5.4702 -0.7095 49 1 2.5717 5.9855 -0.7677 50 1 3.4056 5.8438 0.7984 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088052388.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:34:12 Heat of formation + Delta-G solvation = 47.233484 kcal Electronic energy + Delta-G solvation = -31117.734755 eV Core-core repulsion = 27145.966313 eV Total energy + Delta-G solvation = -3971.768442 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.66039 -40.30167 -38.55861 -35.85928 -35.41198 -33.93639 -32.77428 -31.83647 -31.52769 -30.31212 -28.35441 -27.86982 -26.37925 -25.40818 -23.89043 -23.57039 -22.58446 -22.15185 -21.45258 -19.76541 -18.13613 -17.67119 -17.44892 -17.21172 -16.13340 -16.01675 -15.67110 -15.41609 -15.09946 -14.79206 -14.45611 -14.34531 -14.00872 -13.76627 -13.72192 -13.35650 -13.18427 -13.14829 -12.91889 -12.64636 -12.53012 -12.46663 -12.29450 -12.07683 -11.89641 -11.49357 -11.40617 -11.06047 -11.01990 -10.90567 -10.68404 -10.58941 -10.45073 -10.31802 -10.25560 -9.85448 -9.81641 -9.71758 -9.63734 -9.57725 -8.78177 -8.58858 -6.65397 -5.61171 -3.45223 0.16490 0.58158 2.38366 2.66550 3.23910 3.32180 3.37850 3.38525 3.63752 3.92169 4.08626 4.19105 4.39365 4.44906 4.59142 4.69478 4.78547 4.86343 4.96963 4.97796 5.19722 5.23531 5.24506 5.31914 5.33995 5.39613 5.41351 5.44612 5.53839 5.60063 5.65065 5.72015 5.73964 5.79174 5.84428 5.92599 5.98995 6.00272 6.04913 6.07064 6.26459 6.46459 6.49903 6.60356 6.71103 6.77276 7.25643 7.34113 7.72157 7.81824 8.01595 8.43254 8.54644 9.27701 9.91767 10.22438 11.16911 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.013058 B = 0.003088 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2143.818741 B = 9064.567079 C =10522.734293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.070 4.070 3 C 0.065 3.935 4 C -0.079 4.079 5 C -0.120 4.120 6 C 0.578 3.422 7 O -0.527 6.527 8 N -0.604 5.604 9 C 0.109 3.891 10 C -0.080 4.080 11 H 0.102 0.898 12 C -0.126 4.126 13 C 0.155 3.845 14 N -0.591 5.591 15 C -0.268 4.268 16 H 0.063 0.937 17 C 0.014 3.986 18 N -0.900 5.900 19 Si 0.905 3.095 20 H -0.281 1.281 21 H -0.290 1.290 22 H -0.283 1.283 23 C 0.179 3.821 24 C -0.096 4.096 25 H 0.075 0.925 26 C 0.102 3.898 27 C 0.111 3.889 28 C -0.117 4.117 29 N -0.241 5.241 30 N -0.224 5.224 31 H 0.064 0.936 32 H 0.053 0.947 33 H 0.067 0.933 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.157 0.843 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.058 0.942 40 H 0.043 0.957 41 H 0.098 0.902 42 H 0.018 0.982 43 H 0.254 0.746 44 H 0.025 0.975 45 H 0.011 0.989 46 H 0.079 0.921 47 H 0.072 0.928 48 H 0.082 0.918 49 H 0.083 0.917 50 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.850 8.045 -7.074 15.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.109 4.109 3 C -0.080 4.080 4 C -0.108 4.108 5 C -0.134 4.134 6 C 0.365 3.635 7 O -0.404 6.404 8 N -0.337 5.337 9 C -0.013 4.013 10 C -0.099 4.099 11 H 0.120 0.880 12 C -0.164 4.164 13 C 0.030 3.970 14 N -0.317 5.317 15 C -0.398 4.398 16 H 0.080 0.920 17 C -0.185 4.185 18 N -0.545 5.545 19 Si 0.735 3.265 20 H -0.208 1.208 21 H -0.215 1.215 22 H -0.209 1.209 23 C 0.052 3.948 24 C -0.116 4.116 25 H 0.093 0.907 26 C -0.020 4.020 27 C -0.034 4.034 28 C -0.175 4.175 29 N -0.083 5.083 30 N -0.066 5.066 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.110 0.890 35 H 0.105 0.895 36 H 0.174 0.826 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.077 0.923 40 H 0.061 0.939 41 H 0.115 0.885 42 H 0.036 0.964 43 H 0.065 0.935 44 H 0.043 0.957 45 H 0.029 0.971 46 H 0.097 0.903 47 H 0.091 0.909 48 H 0.101 0.899 49 H 0.102 0.898 50 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -12.861 8.977 -8.027 17.619 hybrid contribution 1.260 -1.296 1.254 2.200 sum -11.601 7.681 -6.773 15.475 Atomic orbital electron populations 1.21709 0.93610 1.02303 1.02759 1.20495 0.97363 0.88756 1.04252 1.22865 0.94371 0.98760 0.91992 1.22654 0.94860 0.94672 0.98611 1.21009 0.99907 0.94859 0.97638 1.17510 0.80133 0.84330 0.81525 1.90746 1.73825 1.19107 1.56750 1.48643 1.26853 1.21545 1.36650 1.22539 0.90315 0.98703 0.89752 1.22094 0.98399 0.93707 0.95669 0.88000 1.21775 0.99154 0.97820 0.97626 1.20610 0.98856 0.90047 0.87453 1.42585 1.71547 1.15510 1.02009 1.19106 1.23599 0.92101 1.04990 0.91978 1.25378 0.97251 0.98615 0.97256 1.69743 1.40160 1.36385 1.08163 0.86336 0.79284 0.83790 0.77117 1.20750 1.21528 1.20935 1.19221 0.97433 0.88087 0.90044 1.21645 0.93431 0.99322 0.97176 0.90669 1.22737 0.96800 0.84279 0.98211 1.23003 0.92182 0.98388 0.89844 1.20980 1.02107 0.88613 1.05794 1.73060 1.08830 1.05589 1.20805 1.72737 1.17314 0.97438 1.19151 0.91703 0.92827 0.91416 0.89048 0.89535 0.82571 0.91332 0.90911 0.92323 0.93870 0.88532 0.96419 0.93537 0.95721 0.97136 0.90267 0.90921 0.89906 0.89792 0.87646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.77 37.16 0.36 -0.79 16 2 C -0.07 -0.58 6.35 -27.88 -0.18 -0.76 16 3 C 0.06 0.72 6.26 -82.46 -0.52 0.21 16 4 C -0.08 -0.88 8.16 -38.78 -0.32 -1.20 16 5 C -0.12 -1.52 5.28 -104.57 -0.55 -2.08 16 6 C 0.58 8.03 7.13 -12.20 -0.09 7.95 16 7 O -0.53 -8.46 14.98 5.35 0.08 -8.38 16 8 N -0.60 -7.99 3.34 -170.46 -0.57 -8.56 16 9 C 0.11 1.43 6.25 -2.28 -0.01 1.42 16 10 C -0.08 -1.18 3.65 -88.80 -0.32 -1.50 16 11 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 12 C -0.13 -2.11 4.78 -27.50 -0.13 -2.24 16 13 C 0.15 3.41 5.04 -5.91 -0.03 3.38 16 14 N -0.59 -13.57 3.23 -179.70 -0.58 -14.15 16 15 C -0.27 -6.92 9.29 -15.06 -0.14 -7.06 16 16 H 0.06 1.58 7.83 -52.48 -0.41 1.17 16 17 C 0.01 0.36 5.34 -17.43 -0.09 0.27 16 18 N -0.90 -24.43 10.22 55.49 0.57 -23.86 16 19 Si 0.91 20.69 29.55 -169.99 -5.02 15.67 16 20 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 21 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 23 C 0.18 3.36 5.75 -6.98 -0.04 3.32 16 24 C -0.10 -1.43 2.84 -90.92 -0.26 -1.69 16 25 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 26 C 0.10 1.31 4.13 -2.53 -0.01 1.30 16 27 C 0.11 1.42 6.90 -81.99 -0.57 0.86 16 28 C -0.12 -1.26 9.66 36.01 0.35 -0.91 16 29 N -0.24 -3.33 11.42 33.81 0.39 -2.94 16 30 N -0.22 -2.96 11.03 33.57 0.37 -2.59 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.59 7.96 -51.93 -0.41 0.18 16 34 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.09 0.60 7.92 -51.93 -0.41 0.19 16 36 H 0.16 1.51 6.54 -52.49 -0.34 1.17 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.07 0.96 7.79 -51.93 -0.40 0.56 16 39 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.04 0.70 6.60 -51.93 -0.34 0.35 16 41 H 0.10 2.45 5.54 -51.93 -0.29 2.16 16 42 H 0.02 0.43 8.12 -51.93 -0.42 0.01 16 43 H 0.25 6.72 8.31 -40.82 -0.34 6.38 16 44 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.01 0.20 7.80 -51.93 -0.40 -0.20 16 46 H 0.08 1.05 6.27 -51.93 -0.33 0.72 16 47 H 0.07 0.86 7.51 -51.93 -0.39 0.47 16 48 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 49 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 50 H 0.11 1.25 5.72 -51.93 -0.30 0.96 16 LS Contribution 387.00 15.07 5.83 5.83 Total: -1.00 -29.60 387.00 -9.30 -38.89 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -7.81 Total: -0.40 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: -2.54 Total: 0.49 kcal Atomic # 7 Polarization: -52.29 SS G_CDS: 0.17 Total: -52.11 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: 0.08 Total: -8.38 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -29.60 -9.30 -38.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088052388.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.125 kcal (2) G-P(sol) polarization free energy of solvation -29.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds