Wall clock time and date at job start Wed Apr 1 2020 03:34:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50698 * 109.47249 * 2 1 4 4 C 1.38542 * 120.01306 * 124.99834 * 3 2 1 5 5 C 1.40074 * 117.81983 * 179.72953 * 4 3 2 6 6 C 1.48137 * 121.15092 * 180.23045 * 5 4 3 7 7 O 1.21514 * 120.00360 * 222.81105 * 6 5 4 8 8 N 1.34773 * 119.99767 * 42.81195 * 6 5 4 9 9 C 1.47382 * 125.74038 * 185.43221 * 8 6 5 10 10 C 1.55419 * 106.74037 * 179.02610 * 9 8 6 11 11 H 1.08996 * 112.75932 * 147.11848 * 10 9 8 12 12 C 1.52908 * 106.57126 * 270.99560 * 10 9 8 13 13 C 1.51573 * 111.66861 * 169.88638 * 12 10 9 14 14 N 1.44354 * 113.01034 * 320.12096 * 13 12 10 15 15 C 1.36932 * 116.42235 * 188.02577 * 14 13 12 16 16 H 1.08007 * 119.99677 * 144.77632 * 15 14 13 17 17 C 1.38807 * 120.00473 * 324.77981 * 15 14 13 18 18 N 1.31624 * 119.99695 * 359.71671 * 17 15 14 19 19 Si 1.86791 * 120.00376 * 179.71685 * 17 15 14 20 20 H 1.48499 * 109.47526 * 59.99779 * 19 17 15 21 21 H 1.48508 * 109.47395 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47137 * 300.00046 * 19 17 15 23 23 C 1.43975 * 127.14868 * 8.00313 * 14 13 12 24 24 C 1.49781 * 116.30283 * 2.91760 * 23 14 13 25 25 H 1.08998 * 109.26872 * 141.36652 * 24 23 14 26 26 C 1.47936 * 125.74375 * 5.12007 * 8 6 5 27 27 C 1.39766 * 117.70430 * 0.25528 * 5 4 3 28 28 C 1.50706 * 120.17486 * 179.97438 * 27 5 4 29 29 N 1.31897 * 119.65960 * 359.97438 * 27 5 4 30 30 N 1.28282 * 122.32228 * 0.02562 * 29 27 5 31 31 H 1.09004 * 109.47077 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47124 * 299.99785 * 1 2 3 33 33 H 1.09001 * 109.46960 * 59.99824 * 1 2 3 34 34 H 1.09004 * 109.46465 * 240.00259 * 2 1 3 35 35 H 1.09000 * 109.46885 * 120.00726 * 2 1 3 36 36 H 1.08002 * 121.09667 * 0.02562 * 4 3 2 37 37 H 1.08997 * 110.00226 * 298.34202 * 9 8 6 38 38 H 1.09002 * 110.00603 * 59.70642 * 9 8 6 39 39 H 1.09001 * 109.04034 * 290.45167 * 12 10 9 40 40 H 1.09006 * 109.04041 * 49.39619 * 12 10 9 41 41 H 1.08994 * 108.77203 * 81.02737 * 13 12 10 42 42 H 1.08995 * 108.77501 * 199.32868 * 13 12 10 43 43 H 0.96999 * 120.00298 * 179.97438 * 18 17 15 44 44 H 1.09006 * 108.11433 * 124.67252 * 23 14 13 45 45 H 1.09000 * 108.11580 * 241.33556 * 23 14 13 46 46 H 1.09001 * 110.56681 * 274.18713 * 26 8 6 47 47 H 1.09002 * 110.56627 * 37.03401 * 26 8 6 48 48 H 1.08995 * 109.47151 * 82.91616 * 28 27 5 49 49 H 1.08998 * 109.47177 * 202.91940 * 28 27 5 50 50 H 1.08999 * 109.46539 * 322.91928 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.9121 1.8448 0.9827 5 6 3.3542 3.1730 0.9355 6 6 4.2991 3.7026 1.9460 7 8 4.1231 4.8063 2.4229 8 7 5.3540 2.9602 2.3365 9 6 6.3041 3.3106 3.4073 10 6 7.3227 2.1406 3.5026 11 1 8.3208 2.4727 3.7879 12 6 6.7371 1.1320 4.4915 13 6 7.5138 -0.1696 4.4892 14 7 7.9208 -0.5816 3.1669 15 6 8.4769 -1.8284 3.0614 16 1 8.2934 -2.4290 2.1826 17 6 9.2766 -2.3206 4.0837 18 7 9.5048 -1.5865 5.1521 19 14 10.0288 -4.0246 3.9432 20 1 10.9033 -4.0824 2.7443 21 1 10.8345 -4.3117 5.1572 22 1 8.9473 -5.0342 3.8160 23 6 7.8057 0.1741 1.9469 24 6 7.2591 1.5627 2.0753 25 1 7.7964 2.2250 1.3965 26 6 5.7493 1.6534 1.7668 27 6 2.8728 3.9818 -0.0978 28 6 3.3115 5.4198 -0.2013 29 7 2.0324 3.4799 -0.9818 30 7 1.6314 2.2624 -0.9328 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 1.8933 -0.5138 -0.8901 35 1 1.8933 -0.5140 0.8899 36 1 3.2498 1.1719 1.7571 37 1 6.8221 4.2366 3.1579 38 1 5.7748 3.4222 4.3537 39 1 6.7634 1.5601 5.4935 40 1 5.7015 0.9274 4.2195 41 1 8.4029 -0.0486 5.1080 42 1 6.8896 -0.9514 4.9218 43 1 10.0633 -1.9305 5.8667 44 1 8.7953 0.2402 1.4945 45 1 7.1603 -0.3794 1.2649 46 1 5.2071 0.8433 2.2545 47 1 5.5771 1.6371 0.6906 48 1 4.2745 5.4702 -0.7095 49 1 2.5717 5.9855 -0.7677 50 1 3.4056 5.8438 0.7984 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088052388.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:34:11 Heat of formation + Delta-G solvation = 30.681241 kcal Electronic energy + Delta-G solvation = -31118.452514 eV Core-core repulsion = 27145.966313 eV Total energy + Delta-G solvation = -3972.486201 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.61814 -41.43772 -39.78562 -37.36016 -36.25908 -34.96766 -34.18557 -33.12182 -32.59055 -31.86191 -29.52047 -28.86056 -27.51248 -26.79965 -25.21999 -24.48421 -23.72270 -23.47523 -22.71208 -20.77906 -19.46338 -18.98608 -18.69234 -18.40752 -17.35402 -16.96968 -16.87545 -16.59586 -16.46423 -15.86923 -15.67425 -15.53387 -15.23186 -15.03549 -14.83123 -14.73959 -14.45430 -14.18765 -13.98063 -13.77851 -13.67109 -13.37137 -13.31693 -13.19404 -12.97793 -12.76134 -12.73811 -12.55839 -12.23160 -12.17742 -12.06666 -11.88715 -11.78602 -11.63052 -11.39784 -11.31370 -11.25930 -11.18290 -10.68692 -10.57987 -10.52700 -9.86058 -8.56139 -7.55961 -5.44794 -0.77879 -0.30522 1.34210 1.49801 1.50635 1.57052 1.61259 2.31086 2.51747 2.78469 2.93918 3.19419 3.27409 3.31253 3.45145 3.52772 3.68181 3.77901 3.85156 3.93154 4.09378 4.13816 4.22890 4.34174 4.37089 4.44917 4.47992 4.51510 4.57761 4.59453 4.63309 4.66867 4.75955 4.83668 4.89930 4.95517 5.00418 5.04563 5.05630 5.11989 5.15120 5.17839 5.20068 5.29749 5.33940 5.39208 5.52363 5.72271 6.13832 6.19549 6.57641 6.75662 7.31542 7.50776 8.12210 8.29840 9.16718 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.013058 B = 0.003088 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2143.818741 B = 9064.567079 C =10522.734293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.070 4.070 3 C 0.066 3.934 4 C -0.071 4.071 5 C -0.130 4.130 6 C 0.584 3.416 7 O -0.550 6.550 8 N -0.601 5.601 9 C 0.117 3.883 10 C -0.076 4.076 11 H 0.099 0.901 12 C -0.114 4.114 13 C 0.164 3.836 14 N -0.602 5.602 15 C -0.281 4.281 16 H 0.062 0.938 17 C -0.037 4.037 18 N -0.924 5.924 19 Si 0.963 3.037 20 H -0.276 1.276 21 H -0.294 1.294 22 H -0.278 1.278 23 C 0.178 3.822 24 C -0.094 4.094 25 H 0.093 0.907 26 C 0.111 3.889 27 C 0.104 3.896 28 C -0.113 4.113 29 N -0.262 5.262 30 N -0.244 5.244 31 H 0.082 0.918 32 H 0.048 0.952 33 H 0.054 0.946 34 H 0.100 0.900 35 H 0.105 0.895 36 H 0.174 0.826 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.069 0.931 40 H 0.054 0.946 41 H 0.064 0.936 42 H -0.015 1.015 43 H 0.248 0.752 44 H 0.011 0.989 45 H 0.020 0.980 46 H 0.080 0.920 47 H 0.089 0.911 48 H 0.094 0.906 49 H 0.093 0.907 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.572 8.029 -7.955 16.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.109 4.109 3 C -0.079 4.079 4 C -0.100 4.100 5 C -0.144 4.144 6 C 0.371 3.629 7 O -0.429 6.429 8 N -0.333 5.333 9 C -0.005 4.005 10 C -0.095 4.095 11 H 0.117 0.883 12 C -0.152 4.152 13 C 0.039 3.961 14 N -0.328 5.328 15 C -0.411 4.411 16 H 0.080 0.920 17 C -0.233 4.233 18 N -0.569 5.569 19 Si 0.791 3.209 20 H -0.202 1.202 21 H -0.220 1.220 22 H -0.204 1.204 23 C 0.052 3.948 24 C -0.113 4.113 25 H 0.111 0.889 26 C -0.011 4.011 27 C -0.042 4.042 28 C -0.171 4.171 29 N -0.103 5.103 30 N -0.085 5.085 31 H 0.101 0.899 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.118 0.882 35 H 0.123 0.877 36 H 0.192 0.808 37 H 0.098 0.902 38 H 0.094 0.906 39 H 0.088 0.912 40 H 0.072 0.928 41 H 0.081 0.919 42 H 0.003 0.997 43 H 0.058 0.942 44 H 0.029 0.971 45 H 0.038 0.962 46 H 0.098 0.902 47 H 0.107 0.893 48 H 0.112 0.888 49 H 0.112 0.888 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -13.596 8.966 -8.944 18.581 hybrid contribution 1.467 -1.342 1.509 2.496 sum -12.129 7.625 -7.435 16.141 Atomic orbital electron populations 1.21693 0.93343 1.03214 1.01908 1.20647 0.97540 0.87138 1.05565 1.23287 0.93781 0.99626 0.91188 1.22874 0.94182 0.94270 0.98675 1.20970 1.00279 0.95580 0.97618 1.17576 0.80075 0.83904 0.81324 1.90743 1.74396 1.20138 1.57631 1.48599 1.26709 1.21509 1.36493 1.22425 0.89850 0.98117 0.90060 1.22002 0.98696 0.93796 0.94970 0.88331 1.21606 0.98825 0.95606 0.99178 1.20273 0.97481 0.91664 0.86638 1.42809 1.71300 1.15336 1.03335 1.19434 1.23358 0.93597 1.04761 0.92003 1.26050 0.98085 1.01917 0.97220 1.69993 1.40733 1.37637 1.08560 0.85421 0.78446 0.80223 0.76784 1.20204 1.22042 1.20410 1.19277 0.97159 0.90155 0.88192 1.21531 0.95034 0.97031 0.97707 0.88890 1.22649 0.95098 0.84099 0.99252 1.23253 0.91975 0.99157 0.89778 1.20975 1.02986 0.87707 1.05400 1.73024 1.09558 1.06149 1.21603 1.72681 1.17988 0.97640 1.20236 0.89918 0.93303 0.92645 0.88166 0.87706 0.80829 0.90236 0.90557 0.91214 0.92755 0.91899 0.99726 0.94215 0.97129 0.96179 0.90163 0.89269 0.88781 0.88781 0.88701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.77 71.98 0.70 -1.28 16 2 C -0.07 -0.99 6.35 29.85 0.19 -0.80 16 3 C 0.07 1.35 6.26 42.62 0.27 1.61 16 4 C -0.07 -1.40 8.16 22.79 0.19 -1.22 16 5 C -0.13 -3.05 5.28 -19.83 -0.10 -3.15 16 6 C 0.58 14.88 7.13 86.87 0.62 15.50 16 7 O -0.55 -16.69 14.98 -3.76 -0.06 -16.75 16 8 N -0.60 -14.17 3.34 -811.51 -2.71 -16.89 16 9 C 0.12 2.77 6.25 87.04 0.54 3.32 16 10 C -0.08 -2.09 3.65 -9.62 -0.04 -2.12 16 11 H 0.10 2.83 8.14 -2.39 -0.02 2.81 16 12 C -0.11 -3.69 4.78 30.10 0.14 -3.55 16 13 C 0.16 7.33 5.04 86.31 0.44 7.77 16 14 N -0.60 -27.64 3.23 -722.44 -2.33 -29.97 16 15 C -0.28 -14.56 9.29 84.03 0.78 -13.78 16 16 H 0.06 3.14 7.83 -2.91 -0.02 3.12 16 17 C -0.04 -1.94 5.34 84.86 0.45 -1.49 16 18 N -0.92 -51.32 10.22 21.65 0.22 -51.10 16 19 Si 0.96 42.78 29.55 68.60 2.03 44.80 16 20 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 21 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 22 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 23 C 0.18 6.47 5.75 85.82 0.49 6.96 16 24 C -0.09 -2.56 2.84 -10.99 -0.03 -2.59 16 25 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 26 C 0.11 2.52 4.13 86.57 0.36 2.87 16 27 C 0.10 2.52 6.90 42.92 0.30 2.82 16 28 C -0.11 -2.29 9.66 71.24 0.69 -1.60 16 29 N -0.26 -6.98 11.42 -46.93 -0.54 -7.52 16 30 N -0.24 -6.15 11.03 -47.69 -0.53 -6.68 16 31 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.05 0.90 7.96 -2.39 -0.02 0.88 16 34 H 0.10 1.28 8.14 -2.38 -0.02 1.26 16 35 H 0.10 1.11 7.92 -2.39 -0.02 1.10 16 36 H 0.17 2.78 6.54 -2.91 -0.02 2.76 16 37 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.08 1.81 7.79 -2.39 -0.02 1.79 16 39 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 40 H 0.05 1.64 6.60 -2.38 -0.02 1.63 16 41 H 0.06 3.29 5.54 -2.39 -0.01 3.28 16 42 H -0.02 -0.78 8.12 -2.39 -0.02 -0.80 16 43 H 0.25 13.46 8.31 -92.71 -0.77 12.69 16 44 H 0.01 0.42 8.14 -2.38 -0.02 0.40 16 45 H 0.02 0.71 7.80 -2.39 -0.02 0.69 16 46 H 0.08 1.85 6.27 -2.39 -0.01 1.84 16 47 H 0.09 1.78 7.51 -2.39 -0.02 1.77 16 48 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 49 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 50 H 0.09 2.16 5.72 -2.39 -0.01 2.15 16 Total: -1.00 -64.61 387.00 3.02 -61.59 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: 0.94 Total: 13.23 kcal Atomic # 6 Polarization: 3.29 SS G_CDS: 5.99 Total: 9.28 kcal Atomic # 7 Polarization: -106.27 SS G_CDS: -5.88 Total: -112.15 kcal Atomic # 8 Polarization: -16.69 SS G_CDS: -0.06 Total: -16.75 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.80 kcal Total: -64.61 3.02 -61.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088052388.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.271 kcal (2) G-P(sol) polarization free energy of solvation -64.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds