Wall clock time and date at job start Wed Apr 1 2020 03:08:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31812 * 119.12311 * 2 1 4 4 C 1.32309 * 120.81987 * 179.97438 * 3 2 1 5 5 C 1.38625 * 119.10410 * 359.74366 * 4 3 2 6 6 C 1.38580 * 118.39498 * 0.51678 * 5 4 3 7 7 C 1.50703 * 120.44660 * 179.76008 * 6 5 4 8 8 C 1.52994 * 109.47027 * 124.72110 * 7 6 5 9 9 C 1.50703 * 109.46954 * 180.02562 * 8 7 6 10 10 O 1.21273 * 120.00235 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99761 * 180.02562 * 9 8 7 12 12 C 1.47642 * 125.73175 * 179.97438 * 11 9 8 13 13 C 1.55915 * 104.41931 * 155.06366 * 12 11 9 14 14 H 1.09002 * 112.88592 * 158.83835 * 13 12 11 15 15 C 1.53068 * 106.17763 * 283.25897 * 13 12 11 16 16 C 1.52279 * 110.88179 * 163.28468 * 15 13 12 17 17 N 1.47203 * 108.07018 * 302.49133 * 16 15 13 18 18 C 1.36941 * 121.32604 * 237.93439 * 17 16 15 19 19 H 1.07995 * 119.99668 * 26.97663 * 18 17 16 20 20 C 1.38814 * 119.99791 * 206.97278 * 18 17 16 21 21 N 1.31617 * 120.00309 * 16.75607 * 20 18 17 22 22 Si 1.86797 * 119.99536 * 196.76133 * 20 18 17 23 23 H 1.48503 * 109.47043 * 179.97438 * 22 20 18 24 24 H 1.48496 * 109.47484 * 299.99870 * 22 20 18 25 25 H 1.48503 * 109.47447 * 60.00087 * 22 20 18 26 26 C 1.46721 * 117.34789 * 57.67301 * 17 16 15 27 27 C 1.50980 * 111.05847 * 307.94396 * 26 17 16 28 28 H 1.08997 * 108.99069 * 167.68298 * 27 26 17 29 29 C 1.47460 * 125.73430 * 0.04440 * 11 9 8 30 30 N 1.31783 * 119.12449 * 180.02562 * 2 1 3 31 31 H 1.08997 * 109.47297 * 269.98368 * 1 2 3 32 32 H 1.09000 * 109.47087 * 29.98274 * 1 2 3 33 33 H 1.08998 * 109.46738 * 149.97908 * 1 2 3 34 34 H 1.07997 * 120.44899 * 179.97438 * 4 3 2 35 35 H 1.08000 * 120.80256 * 180.25185 * 5 4 3 36 36 H 1.09002 * 109.47142 * 4.71903 * 7 6 5 37 37 H 1.08997 * 109.46830 * 244.71853 * 7 6 5 38 38 H 1.08993 * 109.47401 * 59.99677 * 8 7 6 39 39 H 1.09003 * 109.47088 * 300.00012 * 8 7 6 40 40 H 1.09009 * 110.44409 * 36.33119 * 12 11 9 41 41 H 1.09001 * 110.44548 * 273.80255 * 12 11 9 42 42 H 1.09003 * 109.20839 * 283.75460 * 15 13 12 43 43 H 1.09004 * 109.20441 * 43.06652 * 15 13 12 44 44 H 1.08996 * 109.68146 * 182.82286 * 16 15 13 45 45 H 1.08998 * 109.64392 * 62.13947 * 16 15 13 46 46 H 0.97000 * 119.99729 * 179.97438 * 21 20 18 47 47 H 1.08997 * 109.16735 * 68.35169 * 26 17 16 48 48 H 1.08997 * 109.16054 * 187.54524 * 26 17 16 49 49 H 1.09000 * 110.05747 * 61.27412 * 29 11 9 50 50 H 1.09002 * 110.06088 * 299.76620 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1486 1.1515 0.0000 4 6 3.4711 1.1907 0.0005 5 6 4.1809 -0.0001 0.0065 6 6 3.4713 -1.1904 0.0007 7 6 4.1961 -2.5116 0.0013 8 6 3.7156 -3.3563 1.1829 9 6 4.4409 -4.6773 1.1839 10 8 5.2611 -4.9195 0.3240 11 7 4.1774 -5.5900 2.1400 12 6 4.8098 -6.9186 2.2614 13 6 4.6813 -7.2730 3.7743 14 1 4.7605 -8.3428 3.9673 15 6 5.7524 -6.4522 4.4970 16 6 5.4712 -6.3897 5.9923 17 7 4.1303 -5.8125 6.1811 18 6 3.9418 -4.6779 6.9243 19 1 4.7395 -3.9561 7.0196 20 6 2.7255 -4.4556 7.5552 21 7 1.8801 -5.4502 7.7238 22 14 2.2886 -2.7448 8.1648 23 1 0.9450 -2.7727 8.7968 24 1 3.2960 -2.3023 9.1620 25 1 2.2769 -1.7992 7.0198 26 6 3.0046 -6.4978 5.5363 27 6 3.2737 -6.7191 4.0672 28 1 2.5318 -7.4126 3.6713 29 6 3.2080 -5.4301 3.2396 30 7 2.1484 -1.1512 -0.0005 31 1 -0.3634 -0.0003 1.0276 32 1 -0.3633 0.8901 -0.5136 33 1 -0.3633 -0.8898 -0.5142 34 1 3.9906 2.1375 0.0001 35 1 5.2609 -0.0001 0.0111 36 1 5.2684 -2.3377 0.0912 37 1 3.9905 -3.0393 -0.9300 38 1 2.6434 -3.5302 1.0931 39 1 3.9212 -2.8286 2.1143 40 1 5.8590 -6.8690 1.9698 41 1 4.2786 -7.6502 1.6525 42 1 6.7273 -6.9113 4.3330 43 1 5.7611 -5.4397 4.0935 44 1 6.2159 -5.7606 6.4798 45 1 5.5031 -7.3946 6.4135 46 1 1.0303 -5.2948 8.1650 47 1 2.8477 -7.4616 6.0204 48 1 2.1055 -5.8917 5.6478 49 1 2.2044 -5.2951 2.8364 50 1 3.4814 -4.5748 3.8576 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088052395.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:05 Heat of formation + Delta-G solvation = 12.612790 kcal Electronic energy + Delta-G solvation = -30650.383983 eV Core-core repulsion = 26677.114275 eV Total energy + Delta-G solvation = -3973.269708 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.12162 -41.49274 -39.67696 -36.89972 -36.12636 -34.39469 -34.36157 -32.83819 -32.34822 -31.93476 -29.52765 -29.00231 -27.39643 -26.85479 -25.12367 -24.08376 -23.17356 -23.01600 -22.40152 -20.34587 -19.89718 -18.70069 -18.61905 -18.11701 -17.34202 -16.99756 -16.76749 -16.48260 -16.23789 -16.10221 -15.80287 -15.49247 -15.27836 -14.96682 -14.66669 -14.41072 -14.10079 -13.90791 -13.86851 -13.82368 -13.57540 -13.32138 -13.23900 -13.15973 -13.01256 -12.83902 -12.80197 -12.50312 -12.35749 -12.29693 -12.07085 -11.99799 -11.84071 -11.64289 -11.57742 -11.05729 -11.02375 -10.90109 -10.50872 -10.36379 -10.25288 -9.63056 -8.64209 -7.85838 -5.28474 -0.11194 0.05927 1.46021 1.48159 1.53851 1.57165 1.98547 2.51232 2.70310 2.89415 3.11899 3.27195 3.35045 3.57737 3.67085 3.72698 3.77126 3.92424 4.01635 4.04100 4.09597 4.19060 4.28958 4.41606 4.44838 4.50526 4.55462 4.58564 4.67813 4.68386 4.70966 4.73838 4.79658 4.89707 4.91528 4.97564 5.02949 5.04884 5.08537 5.15552 5.18327 5.18582 5.35580 5.42707 5.47066 5.58803 5.66150 5.78475 6.03512 6.40598 6.50229 7.08520 7.09880 7.18123 7.88778 8.42793 9.20497 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.008694 B = 0.003578 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3219.757034 B = 7824.726982 C = 9985.839870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.301 3.699 3 N -0.545 5.545 4 C 0.148 3.852 5 C -0.229 4.229 6 C 0.167 3.833 7 C -0.045 4.045 8 C -0.119 4.119 9 C 0.530 3.470 10 O -0.579 6.579 11 N -0.612 5.612 12 C 0.111 3.889 13 C -0.081 4.081 14 H 0.114 0.886 15 C -0.114 4.114 16 C 0.139 3.861 17 N -0.605 5.605 18 C -0.255 4.255 19 H 0.060 0.940 20 C -0.040 4.040 21 N -0.929 5.929 22 Si 0.954 3.046 23 H -0.294 1.294 24 H -0.279 1.279 25 H -0.282 1.282 26 C 0.189 3.811 27 C -0.108 4.108 28 H 0.084 0.916 29 C 0.121 3.879 30 N -0.539 5.539 31 H 0.090 0.910 32 H 0.096 0.904 33 H 0.090 0.910 34 H 0.203 0.797 35 H 0.176 0.824 36 H 0.101 0.899 37 H 0.091 0.909 38 H 0.103 0.897 39 H 0.090 0.910 40 H 0.074 0.926 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.042 0.958 44 H 0.048 0.952 45 H 0.023 0.977 46 H 0.250 0.750 47 H 0.003 0.997 48 H 0.058 0.942 49 H 0.073 0.927 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.611 5.885 -16.294 17.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.034 3.966 3 N -0.260 5.260 4 C -0.017 4.017 5 C -0.250 4.250 6 C 0.022 3.978 7 C -0.083 4.083 8 C -0.160 4.160 9 C 0.320 3.680 10 O -0.460 6.460 11 N -0.345 5.345 12 C -0.011 4.011 13 C -0.099 4.099 14 H 0.132 0.868 15 C -0.153 4.153 16 C 0.014 3.986 17 N -0.328 5.328 18 C -0.386 4.386 19 H 0.078 0.922 20 C -0.236 4.236 21 N -0.575 5.575 22 Si 0.783 3.217 23 H -0.220 1.220 24 H -0.205 1.205 25 H -0.208 1.208 26 C 0.063 3.937 27 C -0.129 4.129 28 H 0.102 0.898 29 C -0.001 4.001 30 N -0.255 5.255 31 H 0.109 0.891 32 H 0.115 0.885 33 H 0.109 0.891 34 H 0.220 0.780 35 H 0.194 0.806 36 H 0.119 0.881 37 H 0.109 0.891 38 H 0.121 0.879 39 H 0.108 0.892 40 H 0.092 0.908 41 H 0.096 0.904 42 H 0.094 0.906 43 H 0.061 0.939 44 H 0.066 0.934 45 H 0.041 0.959 46 H 0.059 0.941 47 H 0.021 0.979 48 H 0.077 0.923 49 H 0.091 0.909 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.906 5.835 -16.706 17.798 hybrid contribution 0.415 0.789 0.889 1.259 sum 2.321 6.624 -15.817 17.305 Atomic orbital electron populations 1.20651 0.84189 1.04889 1.04499 1.23789 0.99439 0.83318 0.90082 1.68318 1.11418 1.30495 1.15788 1.23865 0.89218 1.00134 0.88481 1.23107 1.04471 0.93353 1.04115 1.21891 0.89629 0.96603 0.89687 1.20264 0.99665 0.89518 0.98854 1.21441 1.01903 0.92207 1.00414 1.20503 0.82201 0.85556 0.79746 1.90647 1.36753 1.80157 1.38477 1.48723 1.41271 1.17043 1.27427 1.22616 0.98455 0.83496 0.96569 1.22336 0.94190 1.00467 0.92947 0.86841 1.21725 0.98112 0.99266 0.96215 1.20914 0.87100 0.96079 0.94502 1.44192 1.02677 1.28922 1.57011 1.19322 0.99302 0.96486 1.23459 0.92190 1.25572 0.99105 0.99932 0.98965 1.70133 1.10354 1.30608 1.46434 0.85551 0.76879 0.81175 0.78104 1.21983 1.20518 1.20815 1.19884 0.91481 0.94748 0.87588 1.21905 0.98043 0.95971 0.96968 0.89784 1.21845 0.91822 0.99485 0.86980 1.68074 1.10374 1.31219 1.15801 0.89146 0.88533 0.89076 0.78038 0.80618 0.88072 0.89082 0.87890 0.89205 0.90773 0.90381 0.90586 0.93906 0.93377 0.95867 0.94091 0.97916 0.92317 0.90864 0.92574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.48 10.32 71.24 0.74 -0.74 16 2 C 0.30 7.19 7.64 138.75 1.06 8.25 16 3 N -0.54 -12.50 10.33 -187.83 -1.94 -14.44 16 4 C 0.15 2.63 11.31 84.71 0.96 3.58 16 5 C -0.23 -4.08 9.80 22.44 0.22 -3.86 16 6 C 0.17 3.81 6.20 42.56 0.26 4.07 16 7 C -0.04 -1.00 4.94 29.85 0.15 -0.85 16 8 C -0.12 -3.06 4.77 29.85 0.14 -2.92 16 9 C 0.53 15.96 7.85 87.66 0.69 16.65 16 10 O -0.58 -19.97 16.24 -3.01 -0.05 -20.02 16 11 N -0.61 -18.19 2.85 -810.02 -2.31 -20.49 16 12 C 0.11 2.96 6.18 87.17 0.54 3.49 16 13 C -0.08 -2.27 3.72 -9.40 -0.03 -2.31 16 14 H 0.11 2.76 8.14 -2.39 -0.02 2.74 16 15 C -0.11 -3.59 4.95 30.38 0.15 -3.44 16 16 C 0.14 5.42 6.49 86.01 0.56 5.98 16 17 N -0.60 -28.32 2.89 -704.86 -2.04 -30.35 16 18 C -0.26 -13.42 9.66 84.03 0.81 -12.61 16 19 H 0.06 3.14 7.88 -2.91 -0.02 3.11 16 20 C -0.04 -2.13 4.95 84.86 0.42 -1.71 16 21 N -0.93 -52.38 11.18 21.65 0.24 -52.14 16 22 Si 0.95 43.59 29.59 68.60 2.03 45.62 16 23 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 24 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 25 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 26 C 0.19 8.26 4.66 85.68 0.40 8.66 16 27 C -0.11 -3.55 2.70 -10.98 -0.03 -3.58 16 28 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 29 C 0.12 3.87 5.53 86.31 0.48 4.35 16 30 N -0.54 -13.81 9.94 -176.02 -1.75 -15.56 16 31 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.20 1.94 8.06 -2.91 -0.02 1.92 16 35 H 0.18 2.01 8.01 -2.91 -0.02 1.99 16 36 H 0.10 2.04 7.90 -2.39 -0.02 2.02 16 37 H 0.09 2.11 8.10 -2.39 -0.02 2.09 16 38 H 0.10 2.65 7.98 -2.39 -0.02 2.63 16 39 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 40 H 0.07 2.01 7.88 -2.38 -0.02 2.00 16 41 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 42 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 43 H 0.04 1.50 7.13 -2.39 -0.02 1.49 16 44 H 0.05 1.89 7.96 -2.39 -0.02 1.87 16 45 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 46 H 0.25 13.78 8.31 -92.71 -0.77 13.01 16 47 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 48 H 0.06 2.94 6.04 -2.39 -0.01 2.93 16 49 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 50 H 0.06 2.13 7.90 -2.39 -0.02 2.11 16 Total: -1.00 -67.54 398.71 2.61 -64.93 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: 0.92 Total: 19.45 kcal Atomic # 6 Polarization: 15.50 SS G_CDS: 7.51 Total: 23.01 kcal Atomic # 7 Polarization: -125.19 SS G_CDS: -7.79 Total: -132.99 kcal Atomic # 8 Polarization: -19.97 SS G_CDS: -0.05 Total: -20.02 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -67.54 2.61 -64.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088052395.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.540 kcal (2) G-P(sol) polarization free energy of solvation -67.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds