Wall clock time and date at job start Wed Apr 1 2020 03:51:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47354 * 2 1 4 4 C 1.50708 * 109.47111 * 240.00126 * 2 1 3 5 5 N 1.32161 * 120.53402 * 54.15435 * 4 2 1 6 6 C 1.31859 * 120.96439 * 179.97438 * 5 4 2 7 7 N 1.31884 * 122.09338 * 0.02562 * 6 5 4 8 8 C 1.32131 * 120.97015 * 359.97438 * 7 6 5 9 9 C 1.39924 * 120.53624 * 233.88318 * 4 2 1 10 10 C 1.47835 * 120.94161 * 0.02562 * 9 4 2 11 11 O 1.21555 * 119.99743 * 313.02363 * 10 9 4 12 12 N 1.34777 * 120.00077 * 133.03057 * 10 9 4 13 13 C 1.47758 * 125.81746 * 184.96895 * 12 10 9 14 14 C 1.56210 * 103.99420 * 154.03375 * 13 12 10 15 15 H 1.09007 * 113.91445 * 161.28218 * 14 13 12 16 16 C 1.52893 * 106.67644 * 286.50605 * 14 13 12 17 17 C 1.51612 * 111.54815 * 168.35392 * 16 14 13 18 18 N 1.44323 * 113.11585 * 320.92411 * 17 16 14 19 19 C 1.36933 * 116.35500 * 187.24221 * 18 17 16 20 20 H 1.08000 * 120.00534 * 144.31975 * 19 18 17 21 21 C 1.38812 * 119.99937 * 324.32001 * 19 18 17 22 22 N 1.31617 * 120.00358 * 1.34434 * 21 19 18 23 23 Si 1.86806 * 120.00019 * 181.33967 * 21 19 18 24 24 H 1.48501 * 109.46926 * 90.00439 * 23 21 19 25 25 H 1.48497 * 109.47146 * 210.00195 * 23 21 19 26 26 H 1.48495 * 109.47081 * 330.00517 * 23 21 19 27 27 C 1.43998 * 127.29363 * 7.24193 * 18 17 16 28 28 C 1.49958 * 116.09149 * 2.51831 * 27 18 17 29 29 H 1.08998 * 108.42972 * 141.32903 * 28 27 18 30 30 C 1.47615 * 125.81843 * 5.27402 * 12 10 9 31 31 H 1.09000 * 109.47606 * 59.99915 * 1 2 3 32 32 H 1.09001 * 109.47643 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.47198 * 299.99742 * 1 2 3 34 34 H 1.09000 * 109.47606 * 120.00085 * 2 1 3 35 35 H 1.09000 * 109.46629 * 300.00045 * 3 2 1 36 36 H 1.08991 * 109.47031 * 59.99766 * 3 2 1 37 37 H 1.09000 * 109.47055 * 180.02562 * 3 2 1 38 38 H 1.08000 * 118.95287 * 180.02562 * 6 5 4 39 39 H 1.07997 * 120.53803 * 180.02562 * 8 7 6 40 40 H 1.08997 * 110.50140 * 272.78542 * 13 12 10 41 41 H 1.09003 * 110.49927 * 35.46288 * 13 12 10 42 42 H 1.08991 * 109.06527 * 288.88546 * 16 14 13 43 43 H 1.09002 * 109.06303 * 47.82583 * 16 14 13 44 44 H 1.09002 * 108.75396 * 81.86456 * 17 16 14 45 45 H 1.09001 * 108.75111 * 199.98532 * 17 16 14 46 46 H 0.96995 * 120.00320 * 179.97438 * 22 21 19 47 47 H 1.08990 * 108.15662 * 240.79933 * 27 18 17 48 48 H 1.08995 * 108.15382 * 124.23489 * 27 18 17 49 49 H 1.08994 * 110.08222 * 299.83564 * 30 12 10 50 50 H 1.09000 * 110.07928 * 61.34191 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 7 1.6276 -0.3389 -2.4326 6 6 2.0621 -0.9541 -3.5149 7 7 2.9124 -1.9605 -3.4552 8 6 3.3687 -2.3972 -2.2946 9 6 2.9390 -1.7703 -1.1192 10 6 3.4251 -2.2190 0.2029 11 8 3.8100 -1.4033 1.0178 12 7 3.4417 -3.5325 0.5045 13 6 3.8007 -4.1144 1.8144 14 6 3.0393 -5.4780 1.8434 15 1 3.4275 -6.1854 2.5763 16 6 1.5613 -5.1507 2.0582 17 6 0.6825 -6.3637 1.8234 18 7 1.1179 -7.1717 0.7097 19 6 0.2882 -8.1969 0.3414 20 1 0.1847 -8.4601 -0.7010 21 6 -0.4200 -8.8979 1.3077 22 7 -0.3145 -8.5602 2.5755 23 14 -1.5231 -10.3206 0.8089 24 1 -0.7402 -11.5824 0.8230 25 1 -2.6539 -10.4291 1.7653 26 1 -2.0519 -10.0813 -0.5579 27 6 2.3270 -7.0209 -0.0577 28 6 3.2592 -5.9337 0.3872 29 1 4.2828 -6.2939 0.2841 30 6 3.1102 -4.6352 -0.4191 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.8934 -0.5138 0.8899 35 1 1.6766 1.9562 -0.8900 36 1 1.6767 1.9563 0.8899 37 1 3.1300 1.4424 -0.0005 38 1 1.7104 -0.6234 -4.4810 39 1 4.0652 -3.2215 -2.2539 40 1 4.8770 -4.2740 1.8791 41 1 3.4601 -3.4699 2.6247 42 1 1.4191 -4.8007 3.0805 43 1 1.2679 -4.3596 1.3682 44 1 0.6848 -6.9777 2.7240 45 1 -0.3367 -6.0266 1.6346 46 1 -0.8097 -9.0498 3.2507 47 1 2.0497 -6.8276 -1.0939 48 1 2.8686 -7.9662 -0.0274 49 1 2.0851 -4.5307 -0.7742 50 1 3.8001 -4.6366 -1.2631 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088203458.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:30 Heat of formation + Delta-G solvation = 42.727108 kcal Electronic energy + Delta-G solvation = -31647.822947 eV Core-core repulsion = 27675.859095 eV Total energy + Delta-G solvation = -3971.963853 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.63882 -40.19518 -38.39868 -36.31477 -35.60009 -33.46926 -32.69618 -31.89292 -31.39321 -30.24355 -28.00155 -27.26893 -26.07523 -25.13224 -25.01690 -23.51686 -22.07657 -21.54230 -21.04196 -19.90352 -18.36666 -17.76097 -17.32854 -17.09659 -16.89798 -15.92140 -15.72944 -15.12041 -15.02860 -14.86715 -14.24295 -14.16356 -13.96316 -13.78574 -13.76051 -13.31685 -13.26696 -13.00004 -12.72656 -12.60514 -12.37598 -12.30405 -11.88594 -11.78791 -11.71272 -11.46680 -11.35229 -11.03736 -10.98356 -10.87305 -10.77852 -10.61220 -10.28797 -10.24791 -10.03481 -9.78817 -9.73023 -9.66943 -9.52779 -9.49028 -8.69362 -8.52764 -6.61212 -5.56612 -3.41515 0.33322 0.77618 2.47675 2.82830 3.33849 3.40633 3.41850 3.48973 3.72119 3.84426 4.03570 4.20916 4.43083 4.61327 4.65391 4.76751 4.88558 4.99406 5.00873 5.04028 5.17841 5.29352 5.35610 5.45874 5.48126 5.53720 5.54535 5.62616 5.71872 5.75032 5.76729 5.86175 5.86525 5.91651 6.00743 6.09614 6.10702 6.17362 6.20443 6.28490 6.54138 6.58099 6.64625 6.67544 6.76802 6.81500 7.36698 7.41268 7.76114 7.76595 7.94300 8.07558 8.59556 9.32117 9.96559 10.26775 11.20123 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.013817 B = 0.003161 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.024757 B = 8855.451539 C = 9090.516955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.058 4.058 3 C -0.133 4.133 4 C 0.235 3.765 5 N -0.515 5.515 6 C 0.310 3.690 7 N -0.523 5.523 8 C 0.181 3.819 9 C -0.230 4.230 10 C 0.585 3.415 11 O -0.530 6.530 12 N -0.605 5.605 13 C 0.108 3.892 14 C -0.081 4.081 15 H 0.104 0.896 16 C -0.123 4.123 17 C 0.154 3.846 18 N -0.592 5.592 19 C -0.267 4.267 20 H 0.062 0.938 21 C 0.014 3.986 22 N -0.899 5.899 23 Si 0.904 3.096 24 H -0.285 1.285 25 H -0.290 1.290 26 H -0.279 1.279 27 C 0.178 3.822 28 C -0.098 4.098 29 H 0.075 0.925 30 C 0.104 3.896 31 H 0.067 0.933 32 H 0.054 0.946 33 H 0.064 0.936 34 H 0.103 0.897 35 H 0.061 0.939 36 H 0.065 0.935 37 H 0.056 0.944 38 H 0.201 0.799 39 H 0.174 0.826 40 H 0.068 0.932 41 H 0.080 0.920 42 H 0.056 0.944 43 H 0.042 0.958 44 H 0.100 0.900 45 H 0.014 0.986 46 H 0.253 0.747 47 H 0.010 0.990 48 H 0.025 0.975 49 H 0.074 0.926 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.397 14.781 -5.819 17.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.077 4.077 3 C -0.190 4.190 4 C 0.088 3.912 5 N -0.228 5.228 6 C 0.023 3.977 7 N -0.236 5.236 8 C 0.015 3.985 9 C -0.237 4.237 10 C 0.371 3.629 11 O -0.408 6.408 12 N -0.338 5.338 13 C -0.014 4.014 14 C -0.100 4.100 15 H 0.122 0.878 16 C -0.162 4.162 17 C 0.030 3.970 18 N -0.317 5.317 19 C -0.397 4.397 20 H 0.080 0.920 21 C -0.185 4.185 22 N -0.544 5.544 23 Si 0.733 3.267 24 H -0.212 1.212 25 H -0.216 1.216 26 H -0.205 1.205 27 C 0.052 3.948 28 C -0.117 4.117 29 H 0.094 0.906 30 C -0.019 4.019 31 H 0.086 0.914 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.121 0.879 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.075 0.925 38 H 0.217 0.783 39 H 0.190 0.810 40 H 0.087 0.913 41 H 0.098 0.902 42 H 0.074 0.926 43 H 0.061 0.939 44 H 0.117 0.883 45 H 0.033 0.967 46 H 0.064 0.936 47 H 0.028 0.972 48 H 0.043 0.957 49 H 0.092 0.908 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 7.222 15.596 -6.153 18.256 hybrid contribution -0.306 -1.185 0.265 1.253 sum 6.916 14.411 -5.888 17.035 Atomic orbital electron populations 1.21795 0.92968 1.02352 1.02765 1.20416 0.96949 0.97117 0.93251 1.21688 1.01262 0.93687 1.02394 1.21808 0.87193 0.88173 0.93992 1.68281 1.25874 1.30153 0.98519 1.25195 0.87987 0.86884 0.97625 1.68457 1.12577 1.14227 1.28378 1.23582 0.93498 0.95006 0.86455 1.21584 1.04298 1.01512 0.96320 1.17363 0.78393 0.81151 0.85956 1.90784 1.47901 1.52199 1.49876 1.48613 1.66268 1.04570 1.14309 1.22782 0.99069 0.95020 0.84539 1.22296 0.96786 0.94274 0.96624 0.87818 1.21680 0.94002 1.00210 1.00272 1.20645 0.92594 0.89289 0.94465 1.42589 1.18560 1.34035 1.36528 1.19158 1.20284 1.08457 0.91784 0.91990 1.25395 1.00204 0.97801 0.95060 1.69734 1.44436 1.40425 0.99796 0.86269 0.79720 0.82931 0.77736 1.21180 1.21591 1.20473 1.19323 0.87395 0.94094 0.94034 1.21515 1.00869 0.94091 0.95246 0.90640 1.22393 1.00927 0.86119 0.92413 0.91414 0.92688 0.91659 0.87904 0.91969 0.91647 0.92473 0.78280 0.80951 0.91340 0.90168 0.92564 0.93905 0.88302 0.96749 0.93627 0.97212 0.95747 0.90780 0.91461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 9.06 37.15 0.34 -1.21 16 2 C -0.06 -0.71 2.84 -91.77 -0.26 -0.97 16 3 C -0.13 -1.40 9.16 37.16 0.34 -1.06 16 4 C 0.24 3.07 5.52 -81.82 -0.45 2.62 16 5 N -0.51 -6.27 9.98 -10.48 -0.10 -6.37 16 6 C 0.31 3.35 12.27 -92.02 -1.13 2.22 16 7 N -0.52 -6.21 10.42 -14.24 -0.15 -6.36 16 8 C 0.18 2.15 9.85 -16.77 -0.17 1.98 16 9 C -0.23 -3.05 5.45 -104.69 -0.57 -3.62 16 10 C 0.58 8.46 6.75 -12.33 -0.08 8.38 16 11 O -0.53 -8.79 15.44 5.32 0.08 -8.70 16 12 N -0.60 -8.30 2.80 -170.52 -0.48 -8.78 16 13 C 0.11 1.44 6.23 -1.63 -0.01 1.43 16 14 C -0.08 -1.23 3.78 -88.34 -0.33 -1.57 16 15 H 0.10 1.59 8.14 -51.92 -0.42 1.17 16 16 C -0.12 -2.23 4.98 -27.49 -0.14 -2.36 16 17 C 0.15 3.57 5.06 -5.91 -0.03 3.54 16 18 N -0.59 -14.10 3.23 -179.58 -0.58 -14.68 16 19 C -0.27 -7.09 9.28 -15.06 -0.14 -7.23 16 20 H 0.06 1.64 7.83 -52.49 -0.41 1.23 16 21 C 0.01 0.38 5.36 -17.43 -0.09 0.28 16 22 N -0.90 -24.90 10.18 55.49 0.56 -24.34 16 23 Si 0.90 21.14 29.55 -169.99 -5.02 16.11 16 24 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 25 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 26 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 27 C 0.18 3.45 5.67 -6.88 -0.04 3.41 16 28 C -0.10 -1.47 2.68 -91.22 -0.24 -1.71 16 29 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 30 C 0.10 1.39 4.33 -3.14 -0.01 1.37 16 31 H 0.07 0.72 7.97 -51.93 -0.41 0.31 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.10 1.42 5.54 -51.93 -0.29 1.14 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.20 1.41 8.06 -52.49 -0.42 0.99 16 39 H 0.17 1.69 5.95 -52.49 -0.31 1.38 16 40 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.08 1.11 7.98 -51.93 -0.41 0.69 16 42 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 43 H 0.04 0.78 6.77 -51.93 -0.35 0.43 16 44 H 0.10 2.59 5.48 -51.93 -0.28 2.31 16 45 H 0.01 0.37 8.12 -51.93 -0.42 -0.05 16 46 H 0.25 6.79 8.31 -40.82 -0.34 6.46 16 47 H 0.01 0.20 7.78 -51.93 -0.40 -0.21 16 48 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 49 H 0.07 1.14 7.83 -51.93 -0.41 0.73 16 50 H 0.07 0.73 6.04 -51.93 -0.31 0.41 16 LS Contribution 386.26 15.07 5.82 5.82 Total: -1.00 -30.25 386.26 -10.70 -40.95 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -7.81 Total: 0.84 kcal Atomic # 6 Polarization: 8.53 SS G_CDS: -3.02 Total: 5.51 kcal Atomic # 7 Polarization: -59.78 SS G_CDS: -0.75 Total: -60.53 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: 0.08 Total: -8.70 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -30.25 -10.70 -40.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088203458.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.678 kcal (2) G-P(sol) polarization free energy of solvation -30.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds