Wall clock time and date at job start Wed Apr 1 2020 03:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47354 * 2 1 4 4 C 1.50708 * 109.47111 * 240.00126 * 2 1 3 5 5 N 1.32161 * 120.53402 * 54.15435 * 4 2 1 6 6 C 1.31859 * 120.96439 * 179.97438 * 5 4 2 7 7 N 1.31884 * 122.09338 * 0.02562 * 6 5 4 8 8 C 1.32131 * 120.97015 * 359.97438 * 7 6 5 9 9 C 1.39924 * 120.53624 * 233.88318 * 4 2 1 10 10 C 1.47835 * 120.94161 * 0.02562 * 9 4 2 11 11 O 1.21555 * 119.99743 * 313.02363 * 10 9 4 12 12 N 1.34777 * 120.00077 * 133.03057 * 10 9 4 13 13 C 1.47758 * 125.81746 * 184.96895 * 12 10 9 14 14 C 1.56210 * 103.99420 * 154.03375 * 13 12 10 15 15 H 1.09007 * 113.91445 * 161.28218 * 14 13 12 16 16 C 1.52893 * 106.67644 * 286.50605 * 14 13 12 17 17 C 1.51612 * 111.54815 * 168.35392 * 16 14 13 18 18 N 1.44323 * 113.11585 * 320.92411 * 17 16 14 19 19 C 1.36933 * 116.35500 * 187.24221 * 18 17 16 20 20 H 1.08000 * 120.00534 * 144.31975 * 19 18 17 21 21 C 1.38812 * 119.99937 * 324.32001 * 19 18 17 22 22 N 1.31617 * 120.00358 * 1.34434 * 21 19 18 23 23 Si 1.86806 * 120.00019 * 181.33967 * 21 19 18 24 24 H 1.48501 * 109.46926 * 90.00439 * 23 21 19 25 25 H 1.48497 * 109.47146 * 210.00195 * 23 21 19 26 26 H 1.48495 * 109.47081 * 330.00517 * 23 21 19 27 27 C 1.43998 * 127.29363 * 7.24193 * 18 17 16 28 28 C 1.49958 * 116.09149 * 2.51831 * 27 18 17 29 29 H 1.08998 * 108.42972 * 141.32903 * 28 27 18 30 30 C 1.47615 * 125.81843 * 5.27402 * 12 10 9 31 31 H 1.09000 * 109.47606 * 59.99915 * 1 2 3 32 32 H 1.09001 * 109.47643 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.47198 * 299.99742 * 1 2 3 34 34 H 1.09000 * 109.47606 * 120.00085 * 2 1 3 35 35 H 1.09000 * 109.46629 * 300.00045 * 3 2 1 36 36 H 1.08991 * 109.47031 * 59.99766 * 3 2 1 37 37 H 1.09000 * 109.47055 * 180.02562 * 3 2 1 38 38 H 1.08000 * 118.95287 * 180.02562 * 6 5 4 39 39 H 1.07997 * 120.53803 * 180.02562 * 8 7 6 40 40 H 1.08997 * 110.50140 * 272.78542 * 13 12 10 41 41 H 1.09003 * 110.49927 * 35.46288 * 13 12 10 42 42 H 1.08991 * 109.06527 * 288.88546 * 16 14 13 43 43 H 1.09002 * 109.06303 * 47.82583 * 16 14 13 44 44 H 1.09002 * 108.75396 * 81.86456 * 17 16 14 45 45 H 1.09001 * 108.75111 * 199.98532 * 17 16 14 46 46 H 0.96995 * 120.00320 * 179.97438 * 22 21 19 47 47 H 1.08990 * 108.15662 * 240.79933 * 27 18 17 48 48 H 1.08995 * 108.15382 * 124.23489 * 27 18 17 49 49 H 1.08994 * 110.08222 * 299.83564 * 30 12 10 50 50 H 1.09000 * 110.07928 * 61.34191 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 7 1.6276 -0.3389 -2.4326 6 6 2.0621 -0.9541 -3.5149 7 7 2.9124 -1.9605 -3.4552 8 6 3.3687 -2.3972 -2.2946 9 6 2.9390 -1.7703 -1.1192 10 6 3.4251 -2.2190 0.2029 11 8 3.8100 -1.4033 1.0178 12 7 3.4417 -3.5325 0.5045 13 6 3.8007 -4.1144 1.8144 14 6 3.0393 -5.4780 1.8434 15 1 3.4275 -6.1854 2.5763 16 6 1.5613 -5.1507 2.0582 17 6 0.6825 -6.3637 1.8234 18 7 1.1179 -7.1717 0.7097 19 6 0.2882 -8.1969 0.3414 20 1 0.1847 -8.4601 -0.7010 21 6 -0.4200 -8.8979 1.3077 22 7 -0.3145 -8.5602 2.5755 23 14 -1.5231 -10.3206 0.8089 24 1 -0.7402 -11.5824 0.8230 25 1 -2.6539 -10.4291 1.7653 26 1 -2.0519 -10.0813 -0.5579 27 6 2.3270 -7.0209 -0.0577 28 6 3.2592 -5.9337 0.3872 29 1 4.2828 -6.2939 0.2841 30 6 3.1102 -4.6352 -0.4191 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.8934 -0.5138 0.8899 35 1 1.6766 1.9562 -0.8900 36 1 1.6767 1.9563 0.8899 37 1 3.1300 1.4424 -0.0005 38 1 1.7104 -0.6234 -4.4810 39 1 4.0652 -3.2215 -2.2539 40 1 4.8770 -4.2740 1.8791 41 1 3.4601 -3.4699 2.6247 42 1 1.4191 -4.8007 3.0805 43 1 1.2679 -4.3596 1.3682 44 1 0.6848 -6.9777 2.7240 45 1 -0.3367 -6.0266 1.6346 46 1 -0.8097 -9.0498 3.2507 47 1 2.0497 -6.8276 -1.0939 48 1 2.8686 -7.9662 -0.0274 49 1 2.0851 -4.5307 -0.7742 50 1 3.8001 -4.6366 -1.2631 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088203458.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:29 Heat of formation + Delta-G solvation = 26.411665 kcal Electronic energy + Delta-G solvation = -31648.530438 eV Core-core repulsion = 27675.859095 eV Total energy + Delta-G solvation = -3972.671344 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.59548 -41.36269 -39.65100 -37.47851 -36.96793 -34.57691 -34.02063 -33.22598 -32.68975 -31.82921 -29.35251 -28.13297 -27.38356 -26.42793 -26.00998 -25.01515 -23.49517 -23.03543 -21.95979 -20.96850 -19.54662 -19.16517 -18.73838 -18.39094 -17.78739 -17.13375 -17.02147 -16.79775 -16.10386 -15.85160 -15.69898 -15.50450 -15.20871 -15.11392 -14.85564 -14.67203 -14.48293 -14.14470 -14.02556 -13.86459 -13.71882 -13.33990 -13.13077 -13.01572 -12.83018 -12.76762 -12.58059 -12.56640 -12.37178 -12.22067 -12.08024 -11.97681 -11.79120 -11.62019 -11.40499 -11.31524 -11.19246 -11.01952 -10.72989 -10.57977 -10.41026 -9.75840 -8.59002 -7.58261 -5.48088 -0.58479 -0.14481 1.39623 1.46649 1.47306 1.55914 1.76780 2.49154 2.58338 2.84110 3.01091 3.13484 3.17817 3.26379 3.46792 3.60583 3.71595 3.77626 3.86748 3.97848 4.09456 4.10478 4.16785 4.24450 4.35000 4.48087 4.49386 4.57878 4.63977 4.68701 4.72524 4.79384 4.83022 4.87475 4.89497 4.94682 5.00955 5.06298 5.09692 5.14845 5.19437 5.23765 5.28129 5.31301 5.36579 5.48596 5.68323 5.73042 6.09892 6.27706 6.55228 6.84548 6.88040 7.28785 8.09524 8.27575 9.13988 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.013817 B = 0.003161 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.024757 B = 8855.451539 C = 9090.516955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.060 4.060 3 C -0.125 4.125 4 C 0.225 3.775 5 N -0.523 5.523 6 C 0.311 3.689 7 N -0.532 5.532 8 C 0.186 3.814 9 C -0.249 4.249 10 C 0.588 3.412 11 O -0.555 6.555 12 N -0.604 5.604 13 C 0.117 3.883 14 C -0.078 4.078 15 H 0.107 0.893 16 C -0.111 4.111 17 C 0.166 3.834 18 N -0.604 5.604 19 C -0.283 4.283 20 H 0.060 0.940 21 C -0.036 4.036 22 N -0.923 5.923 23 Si 0.965 3.035 24 H -0.280 1.280 25 H -0.293 1.293 26 H -0.273 1.273 27 C 0.175 3.825 28 C -0.095 4.095 29 H 0.110 0.890 30 C 0.112 3.888 31 H 0.071 0.929 32 H 0.037 0.963 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.067 0.933 36 H 0.079 0.921 37 H 0.045 0.955 38 H 0.235 0.765 39 H 0.194 0.806 40 H 0.096 0.904 41 H 0.075 0.925 42 H 0.063 0.937 43 H 0.039 0.961 44 H 0.070 0.930 45 H -0.027 1.027 46 H 0.248 0.752 47 H 0.013 0.987 48 H 0.018 0.982 49 H 0.052 0.948 50 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.790 15.397 -7.269 19.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.079 4.079 3 C -0.183 4.183 4 C 0.078 3.922 5 N -0.237 5.237 6 C 0.025 3.975 7 N -0.245 5.245 8 C 0.019 3.981 9 C -0.257 4.257 10 C 0.376 3.624 11 O -0.434 6.434 12 N -0.336 5.336 13 C -0.005 4.005 14 C -0.097 4.097 15 H 0.125 0.875 16 C -0.150 4.150 17 C 0.041 3.959 18 N -0.330 5.330 19 C -0.414 4.414 20 H 0.077 0.923 21 C -0.232 4.232 22 N -0.568 5.568 23 Si 0.793 3.207 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.198 1.198 27 C 0.049 3.951 28 C -0.114 4.114 29 H 0.128 0.872 30 C -0.010 4.010 31 H 0.090 0.910 32 H 0.057 0.943 33 H 0.098 0.902 34 H 0.101 0.899 35 H 0.086 0.914 36 H 0.098 0.902 37 H 0.064 0.936 38 H 0.251 0.749 39 H 0.211 0.789 40 H 0.114 0.886 41 H 0.093 0.907 42 H 0.082 0.918 43 H 0.058 0.942 44 H 0.087 0.913 45 H -0.009 1.009 46 H 0.059 0.941 47 H 0.031 0.969 48 H 0.036 0.964 49 H 0.070 0.930 50 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 8.630 16.210 -7.629 19.886 hybrid contribution -0.795 -1.368 0.654 1.712 sum 7.835 14.842 -6.974 18.175 Atomic orbital electron populations 1.21747 0.92284 1.01512 1.03694 1.20410 0.97460 0.97740 0.92326 1.21635 1.00466 0.92830 1.03362 1.21997 0.87300 0.88265 0.94632 1.68346 1.26238 1.30567 0.98513 1.25945 0.86964 0.86056 0.98553 1.68554 1.13068 1.14717 1.28200 1.23897 0.93209 0.95058 0.85955 1.21568 1.05420 1.02434 0.96229 1.17483 0.77847 0.80965 0.86146 1.90768 1.49084 1.52769 1.50816 1.48610 1.66036 1.04506 1.14479 1.22727 1.00179 0.93259 0.84319 1.22237 0.94655 0.95743 0.97080 0.87524 1.21488 0.95423 0.97461 1.00590 1.20291 0.91859 0.90606 0.93139 1.42822 1.19910 1.33530 1.36710 1.19462 1.21057 1.09043 0.91812 0.92254 1.26082 1.01905 1.00048 0.95167 1.69972 1.45253 1.41122 1.00480 0.85322 0.77923 0.80119 0.77381 1.20639 1.21941 1.19847 1.19430 0.86461 0.95614 0.93564 1.21454 1.01291 0.93624 0.95001 0.87174 1.22325 1.00711 0.85020 0.92961 0.90956 0.94339 0.90228 0.89852 0.91399 0.90242 0.93570 0.74877 0.78943 0.88628 0.90664 0.91835 0.94241 0.91275 1.00876 0.94142 0.96888 0.96376 0.92988 0.88009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.90 9.06 71.98 0.65 -2.25 16 2 C -0.06 -1.44 2.84 -11.54 -0.03 -1.47 16 3 C -0.13 -2.53 9.16 71.98 0.66 -1.87 16 4 C 0.22 5.68 5.52 42.92 0.24 5.92 16 5 N -0.52 -11.97 9.98 -187.05 -1.87 -13.84 16 6 C 0.31 6.04 12.27 180.84 2.22 8.26 16 7 N -0.53 -11.42 10.42 -198.97 -2.07 -13.49 16 8 C 0.19 4.00 9.85 85.07 0.84 4.84 16 9 C -0.25 -6.31 5.45 -19.91 -0.11 -6.41 16 10 C 0.59 16.29 6.75 86.78 0.59 16.87 16 11 O -0.55 -17.99 15.44 -3.89 -0.06 -18.05 16 12 N -0.60 -15.35 2.80 -811.68 -2.27 -17.63 16 13 C 0.12 2.84 6.23 87.25 0.54 3.38 16 14 C -0.08 -2.26 3.78 -9.32 -0.04 -2.29 16 15 H 0.11 3.08 8.14 -2.38 -0.02 3.06 16 16 C -0.11 -4.05 4.98 30.10 0.15 -3.90 16 17 C 0.17 7.97 5.06 86.33 0.44 8.41 16 18 N -0.60 -29.30 3.23 -722.07 -2.33 -31.63 16 19 C -0.28 -15.34 9.28 84.03 0.78 -14.56 16 20 H 0.06 3.18 7.83 -2.91 -0.02 3.15 16 21 C -0.04 -1.97 5.36 84.86 0.45 -1.52 16 22 N -0.92 -52.69 10.18 21.65 0.22 -52.47 16 23 Si 0.96 44.05 29.55 68.60 2.03 46.08 16 24 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 25 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 26 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 27 C 0.17 6.62 5.67 85.87 0.49 7.11 16 28 C -0.09 -2.62 2.68 -11.19 -0.03 -2.65 16 29 H 0.11 2.39 8.14 -2.39 -0.02 2.37 16 30 C 0.11 2.72 4.33 86.36 0.37 3.10 16 31 H 0.07 1.47 7.97 -2.39 -0.02 1.46 16 32 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.08 2.33 5.54 -2.39 -0.01 2.32 16 35 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.24 2.60 8.06 -2.91 -0.02 2.58 16 39 H 0.19 3.15 5.95 -2.91 -0.02 3.13 16 40 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.07 1.95 7.98 -2.39 -0.02 1.93 16 42 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 43 H 0.04 1.45 6.77 -2.39 -0.02 1.43 16 44 H 0.07 3.80 5.48 -2.39 -0.01 3.78 16 45 H -0.03 -1.48 8.12 -2.39 -0.02 -1.50 16 46 H 0.25 13.76 8.31 -92.71 -0.77 12.99 16 47 H 0.01 0.50 7.78 -2.39 -0.02 0.48 16 48 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 49 H 0.05 1.52 7.83 -2.39 -0.02 1.51 16 50 H 0.10 1.80 6.04 -2.39 -0.01 1.79 16 Total: -1.00 -67.60 386.26 2.79 -64.80 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: 0.94 Total: 15.27 kcal Atomic # 6 Polarization: 12.75 SS G_CDS: 8.21 Total: 20.96 kcal Atomic # 7 Polarization: -120.75 SS G_CDS: -8.33 Total: -129.07 kcal Atomic # 8 Polarization: -17.99 SS G_CDS: -0.06 Total: -18.05 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -67.60 2.79 -64.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088203458.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.216 kcal (2) G-P(sol) polarization free energy of solvation -67.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds