Wall clock time and date at job start Wed Apr 1 2020 03:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31809 * 119.12580 * 2 1 4 4 C 1.32318 * 120.81988 * 180.02562 * 3 2 1 5 5 C 1.38621 * 119.10306 * 0.02562 * 4 3 2 6 6 C 1.38583 * 118.40075 * 0.02562 * 5 4 3 7 7 C 1.50693 * 120.44818 * 180.02562 * 6 5 4 8 8 C 1.52997 * 109.47219 * 124.99971 * 7 6 5 9 9 C 1.50700 * 109.46953 * 180.02562 * 8 7 6 10 10 O 1.21279 * 120.00069 * 359.97438 * 9 8 7 11 11 N 1.34780 * 119.99748 * 179.97438 * 9 8 7 12 12 C 1.47195 * 126.70356 * 0.02847 * 11 9 8 13 13 C 1.53742 * 106.42616 * 211.32851 * 12 11 9 14 14 H 1.09003 * 112.28557 * 104.35959 * 13 12 11 15 15 C 1.54447 * 109.01334 * 229.45459 * 13 12 11 16 16 N 1.48332 * 104.32762 * 137.92921 * 15 13 12 17 17 C 1.36934 * 128.20432 * 138.16872 * 16 15 13 18 18 H 1.08002 * 119.99840 * 338.76267 * 17 16 15 19 19 C 1.38810 * 119.99959 * 158.75536 * 17 16 15 20 20 N 1.31614 * 120.00336 * 336.53882 * 19 17 16 21 21 Si 1.86805 * 119.99642 * 156.26317 * 19 17 16 22 22 H 1.48507 * 109.47099 * 90.00339 * 21 19 17 23 23 H 1.48501 * 109.47057 * 210.00137 * 21 19 17 24 24 H 1.48502 * 109.47429 * 330.00077 * 21 19 17 25 25 C 1.48338 * 103.59789 * 318.43183 * 16 15 13 26 26 C 1.54066 * 104.51515 * 41.53571 * 25 16 15 27 27 C 1.52997 * 112.57948 * 97.43487 * 26 25 16 28 28 C 1.47196 * 126.70123 * 179.97438 * 11 9 8 29 29 N 1.31787 * 119.12001 * 180.29902 * 2 1 3 30 30 H 1.08995 * 109.46958 * 89.99563 * 1 2 3 31 31 H 1.08996 * 109.46986 * 209.99574 * 1 2 3 32 32 H 1.09000 * 109.46731 * 329.99658 * 1 2 3 33 33 H 1.07996 * 120.44655 * 180.02562 * 4 3 2 34 34 H 1.07999 * 120.80096 * 179.97438 * 5 4 3 35 35 H 1.09000 * 109.47107 * 4.99855 * 7 6 5 36 36 H 1.08999 * 109.47001 * 244.99808 * 7 6 5 37 37 H 1.08993 * 109.47213 * 59.99568 * 8 7 6 38 38 H 1.09007 * 109.46745 * 299.99658 * 8 7 6 39 39 H 1.09000 * 110.06755 * 92.08810 * 12 11 9 40 40 H 1.09003 * 110.06201 * 330.56903 * 12 11 9 41 41 H 1.08999 * 110.46251 * 19.21374 * 15 13 12 42 42 H 1.09000 * 110.57548 * 256.69364 * 15 13 12 43 43 H 0.96994 * 119.99931 * 353.98094 * 20 19 17 44 44 H 1.09002 * 110.45762 * 160.27554 * 25 16 15 45 45 H 1.09000 * 110.46770 * 282.85463 * 25 16 15 46 46 H 1.08996 * 109.47378 * 302.11091 * 27 26 25 47 47 H 1.09002 * 109.47452 * 62.11085 * 27 26 25 48 48 H 1.09004 * 109.47180 * 182.10946 * 27 26 25 49 49 H 1.08997 * 110.06481 * 267.90914 * 28 11 9 50 50 H 1.09001 * 110.06521 * 29.37579 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1486 1.1514 0.0000 4 6 3.4712 1.1905 -0.0005 5 6 4.1809 -0.0002 -0.0016 6 6 3.4713 -1.1905 -0.0026 7 6 4.1961 -2.5117 -0.0033 8 6 3.7156 -3.3576 1.1776 9 6 4.4409 -4.6786 1.1773 10 8 5.2610 -4.9199 0.3170 11 7 4.1782 -5.5918 2.1331 12 6 3.2177 -5.4553 3.2401 13 6 3.7907 -6.2642 4.4152 14 1 4.2224 -5.6251 5.1854 15 6 2.6884 -7.1912 4.9728 16 7 3.3831 -8.4774 5.2248 17 6 3.2497 -9.3157 6.2992 18 1 2.8590 -8.9389 7.2329 19 6 3.6163 -10.6499 6.1882 20 7 3.6465 -11.2281 5.0062 21 14 4.0744 -11.6228 7.7157 22 1 2.8579 -12.2615 8.2792 23 1 5.0629 -12.6713 7.3569 24 1 4.6666 -10.7090 8.7255 25 6 4.2617 -8.6371 4.0402 26 6 4.8354 -7.2289 3.7923 27 6 6.2296 -7.0479 4.3959 28 6 4.7950 -6.9209 2.2732 29 7 2.1484 -1.1513 -0.0060 30 1 -0.3633 0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5137 32 1 -0.3633 0.8900 0.5139 33 1 3.9907 2.1373 -0.0001 34 1 5.2609 -0.0003 -0.0024 35 1 5.2684 -2.3379 0.0868 36 1 3.9904 -3.0385 -0.9350 37 1 2.6434 -3.5313 1.0876 38 1 3.9214 -2.8307 2.1094 39 1 2.2485 -5.8582 2.9461 40 1 3.1177 -4.4069 3.5212 41 1 1.8947 -7.3245 4.2378 42 1 2.2831 -6.7889 5.9013 43 1 3.3296 -10.7497 4.2242 44 1 5.0648 -9.3423 4.2539 45 1 3.6825 -8.9675 3.1780 46 1 6.1895 -7.2421 5.4677 47 1 6.9224 -7.7459 3.9259 48 1 6.5702 -6.0268 4.2241 49 1 4.1962 -7.6679 1.7523 50 1 5.8081 -6.9073 1.8711 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091881424.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:10 Heat of formation + Delta-G solvation = 32.944623 kcal Electronic energy + Delta-G solvation = -29931.682147 eV Core-core repulsion = 25959.294094 eV Total energy + Delta-G solvation = -3972.388053 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.46400 -40.36492 -38.60989 -35.48049 -35.16542 -33.76966 -32.80569 -31.86516 -31.31822 -29.50873 -28.90936 -27.24845 -26.16948 -25.22997 -24.98390 -23.46423 -22.49156 -21.85864 -20.61719 -19.21403 -18.51733 -17.93440 -17.45682 -17.13576 -16.29277 -16.04341 -15.78059 -15.51937 -15.26952 -14.76241 -14.58843 -14.15917 -13.77644 -13.74895 -13.57591 -13.37335 -13.21000 -13.09787 -12.78965 -12.72000 -12.57845 -12.41852 -12.32034 -11.86646 -11.80071 -11.58506 -11.22100 -11.19621 -11.08883 -10.84642 -10.74128 -10.49500 -10.27598 -10.19475 -10.12027 -9.99410 -9.83462 -9.71183 -9.56851 -9.43233 -8.61030 -8.51156 -7.03362 -6.16238 -3.23484 0.52755 0.69431 2.63272 2.99543 3.36295 3.46557 3.50874 3.52536 3.65824 3.71780 4.05404 4.41980 4.51564 4.61711 4.67810 4.75414 4.76897 4.82560 4.93748 5.00237 5.08751 5.12755 5.18549 5.27434 5.33618 5.38962 5.46016 5.47484 5.51649 5.54415 5.63428 5.67892 5.75219 5.80474 5.87889 5.96245 6.07065 6.10040 6.13248 6.18807 6.35085 6.50412 6.51520 6.59411 6.66858 6.77617 6.85925 6.98617 7.62162 7.68577 7.75350 8.16347 8.39652 8.92275 9.73530 10.37132 11.19407 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.022326 B = 0.002070 C = 0.001981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.841490 B =13524.778927 C =14131.191126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.320 3.680 3 N -0.527 5.527 4 C 0.153 3.847 5 C -0.233 4.233 6 C 0.185 3.815 7 C -0.056 4.056 8 C -0.126 4.126 9 C 0.530 3.470 10 O -0.549 6.549 11 N -0.613 5.613 12 C 0.107 3.893 13 C -0.109 4.109 14 H 0.085 0.915 15 C 0.131 3.869 16 N -0.597 5.597 17 C -0.328 4.328 18 H 0.064 0.936 19 C -0.026 4.026 20 N -0.918 5.918 21 Si 1.070 2.930 22 H -0.294 1.294 23 H -0.285 1.285 24 H -0.292 1.292 25 C 0.148 3.852 26 C -0.086 4.086 27 C -0.119 4.119 28 C 0.115 3.885 29 N -0.516 5.516 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.169 0.831 34 H 0.149 0.851 35 H 0.093 0.907 36 H 0.098 0.902 37 H 0.104 0.896 38 H 0.090 0.910 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.026 0.974 42 H 0.050 0.950 43 H 0.268 0.732 44 H 0.068 0.932 45 H 0.027 0.973 46 H 0.064 0.936 47 H 0.054 0.946 48 H 0.044 0.956 49 H 0.070 0.930 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.641 23.229 -8.957 24.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.053 3.947 3 N -0.242 5.242 4 C -0.013 4.013 5 C -0.255 4.255 6 C 0.039 3.961 7 C -0.094 4.094 8 C -0.167 4.167 9 C 0.319 3.681 10 O -0.428 6.428 11 N -0.345 5.345 12 C -0.017 4.017 13 C -0.130 4.130 14 H 0.104 0.896 15 C 0.004 3.996 16 N -0.321 5.321 17 C -0.455 4.455 18 H 0.082 0.918 19 C -0.227 4.227 20 N -0.559 5.559 21 Si 0.899 3.101 22 H -0.221 1.221 23 H -0.211 1.211 24 H -0.219 1.219 25 C 0.022 3.978 26 C -0.089 4.089 27 C -0.176 4.176 28 C -0.008 4.008 29 N -0.231 5.231 30 H 0.104 0.896 31 H 0.106 0.894 32 H 0.104 0.896 33 H 0.186 0.814 34 H 0.166 0.834 35 H 0.111 0.889 36 H 0.116 0.884 37 H 0.123 0.877 38 H 0.109 0.891 39 H 0.091 0.909 40 H 0.089 0.911 41 H 0.044 0.956 42 H 0.069 0.931 43 H 0.079 0.921 44 H 0.086 0.914 45 H 0.045 0.955 46 H 0.083 0.917 47 H 0.073 0.927 48 H 0.063 0.937 49 H 0.088 0.912 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.655 21.583 -8.807 23.320 hybrid contribution 0.281 1.596 -0.497 1.696 sum -0.374 23.180 -9.305 24.980 Atomic orbital electron populations 1.20586 0.85615 1.04317 1.03950 1.23310 0.98254 0.83296 0.89868 1.68269 1.10215 1.30552 1.15168 1.23239 0.89685 0.98654 0.89714 1.22801 1.03093 0.94122 1.05451 1.21762 0.89597 0.95882 0.88874 1.20366 0.99298 0.89700 1.00036 1.21506 1.02352 0.93115 0.99700 1.20180 0.82619 0.84941 0.80350 1.90694 1.35397 1.79476 1.37205 1.48613 1.41387 1.16923 1.27622 1.22295 0.92555 1.00456 0.86349 1.23071 0.97471 0.96521 0.95922 0.89647 1.21852 0.92250 0.87806 0.97662 1.45131 1.43486 1.21865 1.21598 1.19723 1.46066 0.91063 0.88697 0.91804 1.25848 1.00130 0.93450 1.03322 1.70740 1.46619 1.38490 1.00032 0.83470 0.76754 0.75593 0.74271 1.22129 1.21105 1.21872 1.21737 0.93913 0.92027 0.90144 1.22553 0.95616 0.98564 0.92150 1.21552 0.94373 1.00168 1.01497 1.22436 0.98838 0.83142 0.96336 1.68104 1.09562 1.30558 1.14892 0.89589 0.89418 0.89601 0.81427 0.83362 0.88861 0.88366 0.87750 0.89134 0.90883 0.91091 0.95646 0.93103 0.92069 0.91365 0.95503 0.91655 0.92731 0.93652 0.91152 0.90610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.59 10.32 36.01 0.37 -0.22 16 2 C 0.32 3.16 7.64 -157.19 -1.20 1.96 16 3 N -0.53 -5.16 10.33 -10.72 -0.11 -5.27 16 4 C 0.15 1.16 11.31 -17.20 -0.19 0.97 16 5 C -0.23 -1.76 9.80 -39.31 -0.39 -2.15 16 6 C 0.19 1.75 6.20 -82.25 -0.51 1.24 16 7 C -0.06 -0.53 4.94 -27.89 -0.14 -0.67 16 8 C -0.13 -1.30 4.55 -27.88 -0.13 -1.42 16 9 C 0.53 7.39 7.88 -10.98 -0.09 7.31 16 10 O -0.55 -9.35 16.21 5.56 0.09 -9.25 16 11 N -0.61 -8.80 3.32 -170.83 -0.57 -9.37 16 12 C 0.11 1.39 6.38 -3.28 -0.02 1.37 16 13 C -0.11 -1.73 3.71 -88.29 -0.33 -2.05 16 14 H 0.09 1.30 7.93 -51.93 -0.41 0.89 16 15 C 0.13 2.52 6.76 -2.27 -0.02 2.51 16 16 N -0.60 -14.40 3.22 -168.71 -0.54 -14.94 16 17 C -0.33 -8.93 10.22 -15.06 -0.15 -9.09 16 18 H 0.06 1.73 7.93 -52.49 -0.42 1.32 16 19 C -0.03 -0.72 5.14 -17.43 -0.09 -0.81 16 20 N -0.92 -27.21 12.77 55.49 0.71 -26.50 16 21 Si 1.07 24.86 29.98 -169.99 -5.10 19.77 16 22 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 23 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 25 C 0.15 3.25 4.33 -2.47 -0.01 3.24 16 26 C -0.09 -1.49 1.10 -151.68 -0.17 -1.65 16 27 C -0.12 -1.93 8.64 37.16 0.32 -1.61 16 28 C 0.12 1.85 6.26 -2.58 -0.02 1.84 16 29 N -0.52 -5.48 9.94 -6.99 -0.07 -5.55 16 30 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.17 0.71 8.06 -52.49 -0.42 0.28 16 34 H 0.15 0.74 8.01 -52.49 -0.42 0.32 16 35 H 0.09 0.81 7.90 -51.93 -0.41 0.40 16 36 H 0.10 1.02 8.10 -51.93 -0.42 0.60 16 37 H 0.10 1.06 7.98 -51.93 -0.41 0.64 16 38 H 0.09 0.82 7.86 -51.93 -0.41 0.41 16 39 H 0.07 0.95 7.11 -51.93 -0.37 0.58 16 40 H 0.07 0.75 7.31 -51.93 -0.38 0.37 16 41 H 0.03 0.49 7.18 -51.93 -0.37 0.12 16 42 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 43 H 0.27 7.96 6.44 -40.82 -0.26 7.70 16 44 H 0.07 1.68 7.15 -51.93 -0.37 1.31 16 45 H 0.03 0.61 6.82 -51.93 -0.35 0.26 16 46 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 47 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 48 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 49 H 0.07 1.18 7.15 -51.93 -0.37 0.81 16 50 H 0.08 1.24 7.65 -51.93 -0.40 0.84 16 LS Contribution 399.84 15.07 6.03 6.03 Total: -1.00 -33.59 399.84 -10.27 -43.86 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -7.96 Total: 0.46 kcal Atomic # 6 Polarization: 3.52 SS G_CDS: -2.75 Total: 0.77 kcal Atomic # 7 Polarization: -61.04 SS G_CDS: -0.58 Total: -61.62 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: 0.09 Total: -9.25 kcal Atomic # 14 Polarization: 24.86 SS G_CDS: -5.10 Total: 19.77 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -33.59 -10.27 -43.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091881424.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.807 kcal (2) G-P(sol) polarization free energy of solvation -33.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds