Wall clock time and date at job start Wed Apr 1 2020 03:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50706 * 109.47002 * 2 1 4 4 C 1.38550 * 120.01355 * 125.26478 * 3 2 1 5 5 C 1.40075 * 117.81400 * 180.24153 * 4 3 2 6 6 C 1.48134 * 121.14207 * 179.78745 * 5 4 3 7 7 O 1.21517 * 119.99970 * 143.03472 * 6 5 4 8 8 N 1.34775 * 120.00044 * 323.02698 * 6 5 4 9 9 C 1.47194 * 126.70488 * 5.42431 * 8 6 5 10 10 C 1.53743 * 106.42902 * 211.34678 * 9 8 6 11 11 H 1.09003 * 112.72442 * 104.04360 * 10 9 8 12 12 C 1.54455 * 109.01405 * 229.45371 * 10 9 8 13 13 N 1.48327 * 104.32500 * 137.35964 * 12 10 9 14 14 C 1.36940 * 128.19733 * 138.19628 * 13 12 10 15 15 H 1.07999 * 120.00013 * 340.14062 * 14 13 12 16 16 C 1.38812 * 119.99843 * 160.15291 * 14 13 12 17 17 N 1.31621 * 120.00107 * 166.35181 * 16 14 13 18 18 Si 1.86799 * 120.00121 * 346.34377 * 16 14 13 19 19 H 1.48499 * 109.47014 * 85.81374 * 18 16 14 20 20 H 1.48500 * 109.47367 * 205.81653 * 18 16 14 21 21 H 1.48500 * 109.47215 * 325.81669 * 18 16 14 22 22 C 1.48330 * 103.60265 * 318.19143 * 13 12 10 23 23 C 1.54457 * 104.32650 * 41.80971 * 22 13 12 24 24 C 1.52998 * 112.29937 * 96.98081 * 23 22 13 25 25 C 1.47196 * 126.70328 * 185.39443 * 8 6 5 26 26 C 1.39766 * 117.70645 * 359.50738 * 5 4 3 27 27 C 1.50697 * 120.16778 * 180.22896 * 26 5 4 28 28 N 1.31892 * 119.65566 * 0.25529 * 26 5 4 29 29 N 1.28270 * 122.33400 * 359.97438 * 28 26 5 30 30 H 1.08996 * 109.47706 * 59.99780 * 1 2 3 31 31 H 1.08999 * 109.47151 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46871 * 299.99683 * 1 2 3 33 33 H 1.09001 * 109.46871 * 240.00317 * 2 1 3 34 34 H 1.08996 * 109.47706 * 120.00220 * 2 1 3 35 35 H 1.08001 * 121.09398 * 0.02562 * 4 3 2 36 36 H 1.08998 * 110.06917 * 92.09938 * 9 8 6 37 37 H 1.09005 * 110.06403 * 330.58410 * 9 8 6 38 38 H 1.09000 * 110.46006 * 256.07306 * 12 10 9 39 39 H 1.08996 * 110.45960 * 18.51665 * 12 10 9 40 40 H 0.96994 * 120.00006 * 179.97438 * 17 16 14 41 41 H 1.09005 * 110.46144 * 160.51558 * 22 13 12 42 42 H 1.09001 * 110.46546 * 283.09969 * 22 13 12 43 43 H 1.08996 * 109.47606 * 302.35241 * 24 23 22 44 44 H 1.09004 * 109.46531 * 62.35569 * 24 23 22 45 45 H 1.08997 * 109.47055 * 182.34905 * 24 23 22 46 46 H 1.08993 * 110.06761 * 29.40682 * 25 8 6 47 47 H 1.09002 * 110.06358 * 267.89362 * 25 8 6 48 48 H 1.09010 * 109.47249 * 85.11708 * 27 26 5 49 49 H 1.09002 * 109.46970 * 205.10868 * 27 26 5 50 50 H 1.09001 * 109.47671 * 325.11399 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.9163 1.8434 0.9796 5 6 3.3496 3.1748 0.9387 6 6 4.2907 3.7057 1.9520 7 8 5.1463 4.5050 1.6269 8 7 4.1979 3.3023 3.2346 9 6 3.2991 2.2658 3.7681 10 6 2.9614 2.6827 5.2088 11 1 1.9584 3.0992 5.3025 12 6 3.1851 1.4765 6.1473 13 7 3.8630 2.0548 7.3330 14 6 3.6387 1.7783 8.6553 15 1 2.7079 1.3246 8.9618 16 6 4.6078 2.0816 9.6018 17 7 4.3031 2.0715 10.8823 18 14 6.3444 2.5038 9.0584 19 1 6.4261 3.9528 8.7437 20 1 7.2973 2.1799 10.1503 21 1 6.6904 1.7144 7.8491 22 6 4.8415 3.0033 6.7473 23 6 4.0644 3.6994 5.6084 24 6 3.4858 5.0483 6.0403 25 6 4.9760 3.8116 4.3756 26 6 2.8680 3.9835 -0.0946 27 6 3.3020 5.4231 -0.1945 28 7 2.0314 3.4802 -0.9813 29 7 1.6349 2.2611 -0.9357 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8932 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 3.2574 1.1693 1.7514 36 1 3.8013 1.2984 3.7666 37 1 2.3891 2.2161 3.1701 38 1 2.2309 1.0333 6.4322 39 1 3.8211 0.7330 5.6670 40 1 4.9803 2.2831 11.5436 41 1 5.1589 3.7323 7.4931 42 1 5.7017 2.4656 6.3485 43 1 2.8328 4.9048 6.9011 44 1 4.2987 5.7229 6.3094 45 1 2.9139 5.4784 5.2181 46 1 5.2498 4.8530 4.2065 47 1 5.8720 3.2071 4.5168 48 1 4.2473 5.4811 -0.7345 49 1 2.5431 5.9952 -0.7284 50 1 3.4297 5.8346 0.8067 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091882569.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:34:20 Heat of formation + Delta-G solvation = 58.667566 kcal Electronic energy + Delta-G solvation = -31256.385664 eV Core-core repulsion = 27285.113041 eV Total energy + Delta-G solvation = -3971.272623 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.77129 -40.47378 -38.74866 -35.77668 -35.32626 -33.99837 -32.76620 -31.92859 -31.53965 -30.36329 -28.29902 -27.16978 -26.42442 -25.91959 -25.31088 -23.79023 -22.85891 -22.25751 -20.93198 -19.84809 -19.06305 -17.96025 -17.43775 -16.80893 -16.50104 -16.15898 -15.69877 -15.57047 -15.03429 -14.97946 -14.75865 -14.44813 -14.32756 -13.91089 -13.58048 -13.30203 -13.25079 -13.07216 -12.77697 -12.70464 -12.60485 -12.48312 -12.28317 -12.16194 -12.09255 -11.68910 -11.57596 -11.37497 -11.20633 -11.08591 -10.90427 -10.72181 -10.67749 -10.43796 -10.35925 -10.12826 -9.90910 -9.80730 -9.75166 -9.50923 -8.96950 -8.86567 -7.24233 -6.02677 -3.39678 0.06785 0.49306 2.34104 2.60411 3.17369 3.22194 3.35317 3.39883 3.55008 3.82746 4.00903 4.08796 4.32157 4.41876 4.43117 4.57839 4.63798 4.75977 4.86538 4.88172 5.02979 5.06941 5.11928 5.15634 5.20339 5.24379 5.26871 5.37362 5.38255 5.51088 5.55101 5.58598 5.61921 5.64525 5.73149 5.76862 5.84127 5.88305 5.91209 5.94591 5.96658 6.11971 6.25122 6.29788 6.35556 6.49813 6.53460 6.60416 7.22930 7.45070 7.75941 8.21565 8.35093 8.65540 9.54618 10.07811 11.13646 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.015953 B = 0.003132 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.763766 B = 8937.901985 C =10060.217027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.068 4.068 3 C 0.062 3.938 4 C -0.085 4.085 5 C -0.120 4.120 6 C 0.578 3.422 7 O -0.523 6.523 8 N -0.602 5.602 9 C 0.096 3.904 10 C -0.108 4.108 11 H 0.093 0.907 12 C 0.135 3.865 13 N -0.604 5.604 14 C -0.236 4.236 15 H 0.096 0.904 16 C 0.020 3.980 17 N -0.915 5.915 18 Si 0.888 3.112 19 H -0.286 1.286 20 H -0.302 1.302 21 H -0.270 1.270 22 C 0.110 3.890 23 C -0.085 4.085 24 C -0.123 4.123 25 C 0.116 3.884 26 C 0.113 3.887 27 C -0.098 4.098 28 N -0.240 5.240 29 N -0.223 5.223 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.055 0.945 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.159 0.841 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.061 0.939 39 H 0.033 0.967 40 H 0.264 0.736 41 H 0.071 0.929 42 H 0.039 0.961 43 H 0.070 0.930 44 H 0.055 0.945 45 H 0.048 0.952 46 H 0.082 0.918 47 H 0.075 0.925 48 H 0.092 0.908 49 H 0.081 0.919 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.359 -0.278 -20.844 21.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.107 4.107 3 C -0.083 4.083 4 C -0.114 4.114 5 C -0.134 4.134 6 C 0.365 3.635 7 O -0.399 6.399 8 N -0.335 5.335 9 C -0.027 4.027 10 C -0.129 4.129 11 H 0.111 0.889 12 C 0.008 3.992 13 N -0.328 5.328 14 C -0.363 4.363 15 H 0.113 0.887 16 C -0.178 4.178 17 N -0.559 5.559 18 Si 0.720 3.280 19 H -0.214 1.214 20 H -0.230 1.230 21 H -0.196 1.196 22 C -0.016 4.016 23 C -0.087 4.087 24 C -0.180 4.180 25 C -0.006 4.006 26 C -0.032 4.032 27 C -0.156 4.156 28 N -0.082 5.082 29 N -0.065 5.065 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.107 0.893 34 H 0.104 0.896 35 H 0.177 0.823 36 H 0.097 0.903 37 H 0.094 0.906 38 H 0.079 0.921 39 H 0.051 0.949 40 H 0.075 0.925 41 H 0.089 0.911 42 H 0.057 0.943 43 H 0.089 0.911 44 H 0.074 0.926 45 H 0.067 0.933 46 H 0.100 0.900 47 H 0.093 0.907 48 H 0.110 0.890 49 H 0.100 0.900 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.767 0.406 -22.121 22.632 hybrid contribution 1.955 -0.117 1.201 2.297 sum -2.812 0.289 -20.920 21.110 Atomic orbital electron populations 1.21713 0.93448 1.02378 1.02941 1.20483 0.97544 0.88717 1.03997 1.22885 0.94604 0.98796 0.91980 1.22790 0.94535 0.95416 0.98662 1.21052 0.99253 0.95328 0.97753 1.17490 0.83735 0.81563 0.80724 1.90811 1.35459 1.34381 1.79287 1.48506 1.39806 1.38747 1.06405 1.22610 0.93504 0.91198 0.95366 1.23110 0.99313 0.97952 0.92535 0.88857 1.21849 0.97194 0.92237 0.87883 1.45377 1.42122 1.43751 1.01513 1.18659 1.01179 1.38138 0.78336 0.88652 1.25017 0.97906 0.99977 0.94920 1.69733 1.34005 1.52367 0.99769 0.86917 0.86025 0.77799 0.77303 1.21371 1.23038 1.19572 1.22444 0.92475 0.92863 0.93801 1.22358 0.95379 0.96267 0.94724 1.21609 1.00829 0.94313 1.01268 1.22304 0.94179 1.00600 0.83532 1.23025 0.91919 0.98707 0.89551 1.20747 1.02478 0.88047 1.04373 1.73064 1.08947 1.05505 1.20680 1.72743 1.17309 0.97428 1.19034 0.91422 0.91694 0.92581 0.89268 0.89595 0.82340 0.90255 0.90634 0.92085 0.94920 0.92550 0.91124 0.94335 0.91100 0.92632 0.93281 0.89981 0.90681 0.88955 0.90038 0.89783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.78 37.16 0.36 -0.61 16 2 C -0.07 -0.45 6.35 -27.88 -0.18 -0.63 16 3 C 0.06 0.60 6.25 -82.45 -0.52 0.08 16 4 C -0.08 -0.81 7.63 -38.78 -0.30 -1.11 16 5 C -0.12 -1.40 5.55 -104.57 -0.58 -1.98 16 6 C 0.58 7.63 7.05 -12.20 -0.09 7.55 16 7 O -0.52 -8.17 15.33 5.35 0.08 -8.09 16 8 N -0.60 -7.57 3.32 -172.66 -0.57 -8.15 16 9 C 0.10 1.04 4.86 -3.28 -0.02 1.03 16 10 C -0.11 -1.47 3.74 -88.28 -0.33 -1.80 16 11 H 0.09 1.23 7.93 -51.93 -0.41 0.82 16 12 C 0.14 2.23 6.76 -2.27 -0.02 2.22 16 13 N -0.60 -13.12 3.19 -168.47 -0.54 -13.66 16 14 C -0.24 -6.25 10.82 -15.06 -0.16 -6.42 16 15 H 0.10 2.69 8.06 -52.49 -0.42 2.26 16 16 C 0.02 0.56 5.50 -17.43 -0.10 0.47 16 17 N -0.91 -27.25 13.97 55.49 0.78 -26.48 16 18 Si 0.89 21.55 24.51 -169.99 -4.17 17.38 16 19 H -0.29 -6.68 6.43 56.52 0.36 -6.32 16 20 H -0.30 -7.54 7.11 56.52 0.40 -7.14 16 21 H -0.27 -6.32 6.12 56.52 0.35 -5.97 16 22 C 0.11 2.14 3.82 -2.27 -0.01 2.13 16 23 C -0.08 -1.28 1.08 -152.17 -0.16 -1.45 16 24 C -0.12 -1.79 8.61 37.16 0.32 -1.47 16 25 C 0.12 1.60 6.20 -3.28 -0.02 1.58 16 26 C 0.11 1.36 6.90 -82.00 -0.57 0.79 16 27 C -0.10 -1.02 8.94 36.00 0.32 -0.69 16 28 N -0.24 -3.11 11.42 33.81 0.39 -2.72 16 29 N -0.22 -2.70 11.04 33.58 0.37 -2.33 16 30 H 0.07 0.52 7.96 -51.93 -0.41 0.10 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.09 0.41 7.92 -51.93 -0.41 0.00 16 35 H 0.16 1.17 5.89 -52.49 -0.31 0.86 16 36 H 0.08 0.77 6.75 -51.93 -0.35 0.42 16 37 H 0.08 0.69 6.05 -51.93 -0.31 0.38 16 38 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.03 0.51 7.16 -51.93 -0.37 0.14 16 40 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 41 H 0.07 1.52 4.58 -51.93 -0.24 1.28 16 42 H 0.04 0.75 5.89 -51.93 -0.31 0.45 16 43 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 44 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 45 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.08 1.13 7.69 -51.93 -0.40 0.73 16 47 H 0.08 1.05 7.10 -51.93 -0.37 0.68 16 48 H 0.09 0.93 8.14 -51.92 -0.42 0.51 16 49 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 50 H 0.08 0.91 6.81 -51.93 -0.35 0.56 16 LS Contribution 383.66 15.07 5.78 5.78 Total: -1.00 -31.88 383.66 -7.62 -39.50 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -7.70 Total: -0.93 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: -2.03 Total: -0.31 kcal Atomic # 7 Polarization: -53.76 SS G_CDS: 0.42 Total: -53.34 kcal Atomic # 8 Polarization: -8.17 SS G_CDS: 0.08 Total: -8.09 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.17 Total: 17.38 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.88 -7.62 -39.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091882569.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.167 kcal (2) G-P(sol) polarization free energy of solvation -31.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds