Wall clock time and date at job start Wed Apr 1 2020 03:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50706 * 109.47002 * 2 1 4 4 C 1.38550 * 120.01355 * 125.26478 * 3 2 1 5 5 C 1.40075 * 117.81400 * 180.24153 * 4 3 2 6 6 C 1.48134 * 121.14207 * 179.78745 * 5 4 3 7 7 O 1.21517 * 119.99970 * 143.03472 * 6 5 4 8 8 N 1.34775 * 120.00044 * 323.02698 * 6 5 4 9 9 C 1.47194 * 126.70488 * 5.42431 * 8 6 5 10 10 C 1.53743 * 106.42902 * 211.34678 * 9 8 6 11 11 H 1.09003 * 112.72442 * 104.04360 * 10 9 8 12 12 C 1.54455 * 109.01405 * 229.45371 * 10 9 8 13 13 N 1.48327 * 104.32500 * 137.35964 * 12 10 9 14 14 C 1.36940 * 128.19733 * 138.19628 * 13 12 10 15 15 H 1.07999 * 120.00013 * 340.14062 * 14 13 12 16 16 C 1.38812 * 119.99843 * 160.15291 * 14 13 12 17 17 N 1.31621 * 120.00107 * 166.35181 * 16 14 13 18 18 Si 1.86799 * 120.00121 * 346.34377 * 16 14 13 19 19 H 1.48499 * 109.47014 * 85.81374 * 18 16 14 20 20 H 1.48500 * 109.47367 * 205.81653 * 18 16 14 21 21 H 1.48500 * 109.47215 * 325.81669 * 18 16 14 22 22 C 1.48330 * 103.60265 * 318.19143 * 13 12 10 23 23 C 1.54457 * 104.32650 * 41.80971 * 22 13 12 24 24 C 1.52998 * 112.29937 * 96.98081 * 23 22 13 25 25 C 1.47196 * 126.70328 * 185.39443 * 8 6 5 26 26 C 1.39766 * 117.70645 * 359.50738 * 5 4 3 27 27 C 1.50697 * 120.16778 * 180.22896 * 26 5 4 28 28 N 1.31892 * 119.65566 * 0.25529 * 26 5 4 29 29 N 1.28270 * 122.33400 * 359.97438 * 28 26 5 30 30 H 1.08996 * 109.47706 * 59.99780 * 1 2 3 31 31 H 1.08999 * 109.47151 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46871 * 299.99683 * 1 2 3 33 33 H 1.09001 * 109.46871 * 240.00317 * 2 1 3 34 34 H 1.08996 * 109.47706 * 120.00220 * 2 1 3 35 35 H 1.08001 * 121.09398 * 0.02562 * 4 3 2 36 36 H 1.08998 * 110.06917 * 92.09938 * 9 8 6 37 37 H 1.09005 * 110.06403 * 330.58410 * 9 8 6 38 38 H 1.09000 * 110.46006 * 256.07306 * 12 10 9 39 39 H 1.08996 * 110.45960 * 18.51665 * 12 10 9 40 40 H 0.96994 * 120.00006 * 179.97438 * 17 16 14 41 41 H 1.09005 * 110.46144 * 160.51558 * 22 13 12 42 42 H 1.09001 * 110.46546 * 283.09969 * 22 13 12 43 43 H 1.08996 * 109.47606 * 302.35241 * 24 23 22 44 44 H 1.09004 * 109.46531 * 62.35569 * 24 23 22 45 45 H 1.08997 * 109.47055 * 182.34905 * 24 23 22 46 46 H 1.08993 * 110.06761 * 29.40682 * 25 8 6 47 47 H 1.09002 * 110.06358 * 267.89362 * 25 8 6 48 48 H 1.09010 * 109.47249 * 85.11708 * 27 26 5 49 49 H 1.09002 * 109.46970 * 205.10868 * 27 26 5 50 50 H 1.09001 * 109.47671 * 325.11399 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.9163 1.8434 0.9796 5 6 3.3496 3.1748 0.9387 6 6 4.2907 3.7057 1.9520 7 8 5.1463 4.5050 1.6269 8 7 4.1979 3.3023 3.2346 9 6 3.2991 2.2658 3.7681 10 6 2.9614 2.6827 5.2088 11 1 1.9584 3.0992 5.3025 12 6 3.1851 1.4765 6.1473 13 7 3.8630 2.0548 7.3330 14 6 3.6387 1.7783 8.6553 15 1 2.7079 1.3246 8.9618 16 6 4.6078 2.0816 9.6018 17 7 4.3031 2.0715 10.8823 18 14 6.3444 2.5038 9.0584 19 1 6.4261 3.9528 8.7437 20 1 7.2973 2.1799 10.1503 21 1 6.6904 1.7144 7.8491 22 6 4.8415 3.0033 6.7473 23 6 4.0644 3.6994 5.6084 24 6 3.4858 5.0483 6.0403 25 6 4.9760 3.8116 4.3756 26 6 2.8680 3.9835 -0.0946 27 6 3.3020 5.4231 -0.1945 28 7 2.0314 3.4802 -0.9813 29 7 1.6349 2.2611 -0.9357 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8932 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 3.2574 1.1693 1.7514 36 1 3.8013 1.2984 3.7666 37 1 2.3891 2.2161 3.1701 38 1 2.2309 1.0333 6.4322 39 1 3.8211 0.7330 5.6670 40 1 4.9803 2.2831 11.5436 41 1 5.1589 3.7323 7.4931 42 1 5.7017 2.4656 6.3485 43 1 2.8328 4.9048 6.9011 44 1 4.2987 5.7229 6.3094 45 1 2.9139 5.4784 5.2181 46 1 5.2498 4.8530 4.2065 47 1 5.8720 3.2071 4.5168 48 1 4.2473 5.4811 -0.7345 49 1 2.5431 5.9952 -0.7284 50 1 3.4297 5.8346 0.8067 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091882569.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:34:19 Heat of formation + Delta-G solvation = 38.008240 kcal Electronic energy + Delta-G solvation = -31257.281519 eV Core-core repulsion = 27285.113041 eV Total energy + Delta-G solvation = -3972.168478 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.63708 -41.55664 -39.88039 -36.94046 -36.18758 -34.98954 -34.29214 -33.17021 -32.44445 -31.77414 -29.09086 -28.25516 -27.86253 -27.18236 -26.38536 -24.55987 -23.97633 -23.17802 -22.38429 -20.83676 -20.29669 -18.97059 -18.78929 -18.12032 -17.54716 -17.07883 -16.87701 -16.52932 -16.34909 -16.09051 -15.84847 -15.48707 -15.28755 -14.97616 -14.72853 -14.59455 -14.28365 -14.15931 -13.99772 -13.89747 -13.61023 -13.41924 -13.27510 -13.18103 -13.15928 -12.93653 -12.71618 -12.68122 -12.26405 -12.15010 -12.09906 -11.87110 -11.74632 -11.65783 -11.64035 -11.49293 -11.33487 -11.16370 -10.89175 -10.65094 -10.58554 -9.90346 -9.08827 -8.14180 -5.45191 -0.76618 -0.28233 1.29002 1.37049 1.38397 1.46655 1.62958 2.34490 2.41305 2.80475 2.95569 3.08429 3.18098 3.21585 3.30416 3.43458 3.57161 3.74274 3.79518 3.95815 4.03930 4.10527 4.11839 4.16553 4.36319 4.39892 4.41141 4.53441 4.55306 4.56072 4.59609 4.63709 4.66042 4.74681 4.81659 4.85221 4.90115 4.93058 4.99939 5.01423 5.09684 5.12887 5.15262 5.20685 5.21202 5.28226 5.38851 5.45585 5.64714 6.13429 6.25035 6.70005 6.76959 7.51240 7.53529 8.16432 9.06268 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.015953 B = 0.003132 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.763766 B = 8937.901985 C =10060.217027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.068 4.068 3 C 0.065 3.935 4 C -0.071 4.071 5 C -0.131 4.131 6 C 0.583 3.417 7 O -0.551 6.551 8 N -0.600 5.600 9 C 0.100 3.900 10 C -0.098 4.098 11 H 0.100 0.900 12 C 0.132 3.868 13 N -0.627 5.627 14 C -0.215 4.215 15 H 0.066 0.934 16 C -0.043 4.043 17 N -0.967 5.967 18 Si 0.946 3.054 19 H -0.276 1.276 20 H -0.316 1.316 21 H -0.253 1.253 22 C 0.107 3.893 23 C -0.079 4.079 24 C -0.120 4.120 25 C 0.121 3.879 26 C 0.103 3.897 27 C -0.095 4.095 28 N -0.264 5.264 29 N -0.246 5.246 30 H 0.050 0.950 31 H 0.081 0.919 32 H 0.051 0.949 33 H 0.098 0.902 34 H 0.114 0.886 35 H 0.188 0.812 36 H 0.103 0.897 37 H 0.100 0.900 38 H 0.062 0.938 39 H 0.055 0.945 40 H 0.260 0.740 41 H 0.046 0.954 42 H 0.045 0.955 43 H 0.047 0.953 44 H 0.057 0.943 45 H 0.068 0.932 46 H 0.081 0.919 47 H 0.077 0.923 48 H 0.091 0.909 49 H 0.092 0.908 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.265 -1.380 -23.439 23.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.107 4.107 3 C -0.080 4.080 4 C -0.100 4.100 5 C -0.146 4.146 6 C 0.371 3.629 7 O -0.430 6.430 8 N -0.331 5.331 9 C -0.022 4.022 10 C -0.119 4.119 11 H 0.118 0.882 12 C 0.007 3.993 13 N -0.352 5.352 14 C -0.343 4.343 15 H 0.083 0.917 16 C -0.237 4.237 17 N -0.615 5.615 18 Si 0.776 3.224 19 H -0.203 1.203 20 H -0.245 1.245 21 H -0.177 1.177 22 C -0.018 4.018 23 C -0.081 4.081 24 C -0.177 4.177 25 C -0.001 4.001 26 C -0.042 4.042 27 C -0.153 4.153 28 N -0.105 5.105 29 N -0.087 5.087 30 H 0.069 0.931 31 H 0.100 0.900 32 H 0.070 0.930 33 H 0.116 0.884 34 H 0.132 0.868 35 H 0.205 0.795 36 H 0.121 0.879 37 H 0.118 0.882 38 H 0.080 0.920 39 H 0.073 0.927 40 H 0.069 0.931 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.066 0.934 44 H 0.076 0.924 45 H 0.087 0.913 46 H 0.100 0.900 47 H 0.096 0.904 48 H 0.110 0.890 49 H 0.110 0.890 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.700 -0.699 -24.799 25.250 hybrid contribution 1.797 0.170 1.955 2.660 sum -2.903 -0.529 -22.845 23.034 Atomic orbital electron populations 1.21702 0.93597 1.03182 1.01908 1.20664 0.97322 0.86885 1.05820 1.23389 0.93902 0.99713 0.91018 1.23105 0.93363 0.94724 0.98827 1.20962 0.99669 0.96365 0.97554 1.17610 0.83440 0.80981 0.80866 1.90802 1.36715 1.35678 1.79771 1.48441 1.39748 1.38948 1.05952 1.22706 0.94602 0.91401 0.93484 1.23001 0.99156 0.96031 0.93671 0.88195 1.22113 0.97089 0.93691 0.86416 1.45448 1.43175 1.45363 1.01189 1.18584 0.99591 1.35374 0.80792 0.91662 1.25652 1.01605 1.01536 0.94891 1.69881 1.34925 1.55646 1.01063 0.85978 0.81294 0.78303 0.76872 1.20343 1.24541 1.17682 1.22497 0.92725 0.92232 0.94392 1.22226 0.95703 0.96420 0.93801 1.21569 1.00711 0.94349 1.01063 1.22136 0.93911 1.00884 0.83211 1.23206 0.91982 0.99340 0.89708 1.20724 1.02765 0.87693 1.04089 1.73031 1.09769 1.06250 1.21454 1.72681 1.18114 0.97580 1.20367 0.93096 0.89983 0.93006 0.88383 0.86775 0.79463 0.87949 0.88165 0.91993 0.92704 0.93082 0.93585 0.93697 0.93358 0.92439 0.91293 0.90011 0.90448 0.89043 0.88965 0.90407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.78 71.98 0.70 -0.79 16 2 C -0.07 -0.63 6.35 29.85 0.19 -0.44 16 3 C 0.07 1.05 6.25 42.63 0.27 1.32 16 4 C -0.07 -1.07 7.63 22.79 0.17 -0.89 16 5 C -0.13 -2.69 5.55 -19.83 -0.11 -2.80 16 6 C 0.58 13.67 7.05 86.87 0.61 14.28 16 7 O -0.55 -16.13 15.33 -3.77 -0.06 -16.19 16 8 N -0.60 -12.74 3.32 -818.48 -2.72 -15.45 16 9 C 0.10 1.67 4.86 86.50 0.42 2.09 16 10 C -0.10 -2.31 3.74 -9.28 -0.03 -2.34 16 11 H 0.10 2.28 7.93 -2.39 -0.02 2.26 16 12 C 0.13 3.95 6.76 86.52 0.58 4.54 16 13 N -0.63 -26.43 3.19 -686.93 -2.19 -28.62 16 14 C -0.21 -11.50 10.82 84.03 0.91 -10.59 16 15 H 0.07 3.80 8.06 -2.91 -0.02 3.78 16 16 C -0.04 -2.46 5.50 84.86 0.47 -1.99 16 17 N -0.97 -59.73 13.97 21.65 0.30 -59.42 16 18 Si 0.95 44.92 24.51 68.60 1.68 46.60 16 19 H -0.28 -12.51 6.43 99.48 0.64 -11.87 16 20 H -0.32 -15.58 7.11 99.48 0.71 -14.87 16 21 H -0.25 -11.07 6.12 99.48 0.61 -10.46 16 22 C 0.11 3.93 3.82 86.52 0.33 4.26 16 23 C -0.08 -2.19 1.08 -50.67 -0.05 -2.24 16 24 C -0.12 -3.27 8.61 71.98 0.62 -2.65 16 25 C 0.12 2.95 6.20 86.50 0.54 3.49 16 26 C 0.10 2.32 6.90 42.92 0.30 2.61 16 27 C -0.09 -1.86 8.94 71.23 0.64 -1.22 16 28 N -0.26 -6.49 11.42 -46.94 -0.54 -7.03 16 29 N -0.25 -5.52 11.04 -47.68 -0.53 -6.05 16 30 H 0.05 0.69 7.96 -2.39 -0.02 0.67 16 31 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.11 0.45 7.92 -2.39 -0.02 0.43 16 35 H 0.19 1.63 5.89 -2.91 -0.02 1.62 16 36 H 0.10 1.34 6.75 -2.39 -0.02 1.33 16 37 H 0.10 1.26 6.05 -2.38 -0.01 1.25 16 38 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.06 1.45 7.16 -2.39 -0.02 1.43 16 40 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 41 H 0.05 1.93 4.58 -2.38 -0.01 1.91 16 42 H 0.05 1.61 5.89 -2.39 -0.01 1.60 16 43 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 45 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 46 H 0.08 2.03 7.69 -2.39 -0.02 2.01 16 47 H 0.08 1.89 7.10 -2.39 -0.02 1.88 16 48 H 0.09 1.78 8.14 -2.38 -0.02 1.76 16 49 H 0.09 1.54 8.14 -2.39 -0.02 1.53 16 50 H 0.08 1.61 6.81 -2.39 -0.02 1.60 16 Total: -1.00 -72.05 383.66 3.29 -68.76 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: 0.79 Total: 10.79 kcal Atomic # 6 Polarization: 0.08 SS G_CDS: 6.55 Total: 6.62 kcal Atomic # 7 Polarization: -110.91 SS G_CDS: -5.67 Total: -116.58 kcal Atomic # 8 Polarization: -16.13 SS G_CDS: -0.06 Total: -16.19 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 1.68 Total: 46.60 kcal Total: -72.05 3.29 -68.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091882569.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.764 kcal (2) G-P(sol) polarization free energy of solvation -72.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds