Wall clock time and date at job start Wed Apr 1 2020 03:03:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50704 * 1
3 3 N 1.31889 * 118.94681 * 2 1
4 4 C 1.32130 * 120.96424 * 179.97438 * 3 2 1
5 5 C 1.39978 * 118.92429 * 359.97438 * 4 3 2
6 6 C 1.47822 * 120.94056 * 180.02562 * 5 4 3
7 7 O 1.21547 * 120.00305 * 185.54615 * 6 5 4
8 8 N 1.34778 * 119.99976 * 5.54146 * 6 5 4
9 9 C 1.46503 * 120.00097 * 180.02562 * 8 6 5
10 10 C 1.53005 * 109.47283 * 180.02562 * 9 8 6
11 11 H 1.09002 * 110.88588 * 51.11534 * 10 9 8
12 12 C 1.54914 * 110.99862 * 287.19527 * 10 9 8
13 13 N 1.47424 * 104.82800 * 204.91623 * 12 10 9
14 14 C 1.36939 * 125.64997 * 204.15090 * 13 12 10
15 15 H 1.08007 * 119.99554 * 0.02562 * 14 13 12
16 16 C 1.38810 * 120.00279 * 179.97438 * 14 13 12
17 17 N 1.31611 * 120.00157 * 0.02562 * 16 14 13
18 18 Si 1.86804 * 119.99931 * 179.97438 * 16 14 13
19 19 H 1.48498 * 109.47149 * 90.00367 * 18 16 14
20 20 H 1.48499 * 109.46769 * 210.00060 * 18 16 14
21 21 H 1.48505 * 109.47123 * 330.00132 * 18 16 14
22 22 C 1.47018 * 108.70428 * 24.13080 * 13 12 10
23 23 C 1.54323 * 107.27482 * 358.94072 * 22 13 12
24 24 H 1.08993 * 110.87131 * 96.23954 * 23 22 13
25 25 C 1.52996 * 110.72056 * 219.45025 * 23 22 13
26 26 C 1.39928 * 118.11995 * 0.02562 * 5 4 3
27 27 C 1.50700 * 120.53671 * 180.02562 * 26 5 4
28 28 C 1.53000 * 117.49703 * 180.02562 * 27 26 5
29 29 C 1.52996 * 117.49582 * 248.73392 * 27 26 5
30 30 N 1.31848 * 118.95386 * 180.25546 * 2 1 3
31 31 H 1.09000 * 109.47623 * 90.00094 * 1 2 3
32 32 H 1.09008 * 109.46625 * 210.00162 * 1 2 3
33 33 H 1.09003 * 109.47382 * 329.99644 * 1 2 3
34 34 H 1.07998 * 120.53797 * 180.02562 * 4 3 2
35 35 H 0.97003 * 120.00268 * 0.02562 * 8 6 5
36 36 H 1.09002 * 109.47039 * 299.99910 * 9 8 6
37 37 H 1.08996 * 109.47087 * 60.00086 * 9 8 6
38 38 H 1.09002 * 110.36968 * 323.75454 * 12 10 9
39 39 H 1.09000 * 110.36545 * 86.08361 * 12 10 9
40 40 H 0.96998 * 120.00546 * 180.02562 * 17 16 14
41 41 H 1.09002 * 109.88250 * 239.52106 * 22 13 12
42 42 H 1.08994 * 110.01304 * 118.43381 * 22 13 12
43 43 H 1.09001 * 109.47443 * 173.52109 * 25 23 22
44 44 H 1.09004 * 109.47076 * 293.51474 * 25 23 22
45 45 H 1.09000 * 109.48036 * 53.51539 * 25 23 22
46 46 H 1.08997 * 115.55189 * 34.40822 * 27 26 5
47 47 H 1.08994 * 117.50096 * 215.00098 * 28 27 26
48 48 H 1.09003 * 117.49948 * 0.02562 * 28 27 26
49 49 H 1.08997 * 117.50247 * 359.97438 * 29 27 26
50 50 H 1.09005 * 117.49431 * 144.97360 * 29 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.1454 1.1541 0.0000
4 6 3.4659 1.2006 0.0005
5 6 4.1856 0.0001 0.0016
6 6 5.6638 0.0001 0.0028
7 8 6.2717 -1.0476 -0.0980
8 7 6.3376 1.1619 0.1155
9 6 7.8026 1.1620 0.1161
10 6 8.3125 2.5978 0.2560
11 1 7.8389 3.0978 1.1009
12 6 8.0949 3.3943 -1.0548
13 7 9.1138 4.4593 -1.0227
14 6 9.0390 5.6557 -1.6847
15 1 8.1770 5.8822 -2.2949
16 6 10.0704 6.5777 -1.5708
17 7 11.1204 6.3019 -0.8269
18 14 9.9685 8.2094 -2.4745
19 1 9.3062 9.2157 -1.6062
20 1 11.3377 8.6733 -2.8143
21 1 9.1808 8.0364 -3.7214
22 6 10.2234 4.0244 -0.1618
23 6 9.8583 2.6288 0.3864
24 1 10.3121 1.8434 -0.2179
25 6 10.2806 2.4949 1.8508
26 6 3.4662 -1.2001 0.0015
27 6 4.1858 -2.5242 0.0033
28 6 3.3308 -3.7930 0.0025
29 6 4.0922 -3.3807 -1.2610
30 7 2.1453 -1.1537 -0.0051
31 1 -0.3634 0.0000 -1.0276
32 1 -0.3633 -0.8901 0.5139
33 1 -0.3634 0.8900 0.5139
34 1 3.9815 2.1496 0.0009
35 1 5.8525 1.9981 0.1963
36 1 8.1656 0.5649 0.9526
37 1 8.1663 0.7364 -0.8191
38 1 8.2473 2.7495 -1.9203
39 1 7.0946 3.8269 -1.0742
40 1 11.8410 6.9463 -0.7469
41 1 10.3491 4.7255 0.6634
42 1 11.1444 3.9656 -0.7415
43 1 9.9126 1.5498 2.2501
44 1 11.3683 2.5190 1.9189
45 1 9.8621 3.3203 2.4267
46 1 5.1225 -2.5495 0.5601
47 1 3.7053 -4.6526 0.5580
48 1 2.2477 -3.6700 0.0003
49 1 3.5097 -2.9868 -2.0938
50 1 4.9675 -3.9692 -1.5362
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001093168514.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:03:07
Heat of formation + Delta-G solvation = 58.186645 kcal
Electronic energy + Delta-G solvation = -29864.856501 eV
Core-core repulsion = 25893.563024 eV
Total energy + Delta-G solvation = -3971.293477 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.195 amu
Computer time = 0.97 seconds
Orbital eigenvalues (eV)
-41.70705 -39.58163 -38.08029 -37.45636 -34.84721 -33.91345 -33.33648 -32.89851
-30.77178 -29.92002 -28.74460 -26.13838 -25.70681 -25.07176 -24.00848 -22.81288
-22.49269 -21.29226 -21.01669 -20.07466 -19.36237 -18.08954 -17.88912 -16.79539
-16.67623 -15.96122 -15.77680 -15.36331 -15.26204 -14.90379 -14.47632 -14.26489
-14.01574 -13.82797 -13.53061 -13.33875 -13.00540 -12.89255 -12.82106 -12.56661
-12.24058 -11.93541 -11.86922 -11.75539 -11.73799 -11.58827 -11.43543 -11.25564
-10.85153 -10.82329 -10.78555 -10.45399 -10.18845 -10.03492 -9.99412 -9.92913
-9.71386 -9.63566 -9.60759 -9.55229 -9.05664 -8.63014 -6.86274 -5.73983
-3.07694 0.12103 0.66721 2.63837 2.96586 3.32021 3.37856 3.43128
3.44995 3.45450 3.61618 3.72969 4.01347 4.40826 4.46492 4.55391
4.71700 4.79144 4.80801 4.91449 5.05203 5.13189 5.15130 5.15358
5.27424 5.46398 5.47053 5.49395 5.51315 5.52708 5.66223 5.70411
5.81040 5.91766 5.96067 5.97778 6.01858 6.06481 6.13947 6.23100
6.33003 6.44473 6.51899 6.58469 6.59365 6.71067 6.89347 7.34168
7.53978 7.60959 7.68913 7.81159 8.03019 8.23188 9.19317 9.79605
10.45360 11.37583
Molecular weight = 344.20amu
Principal moments of inertia in cm(-1)
A = 0.014380 B = 0.002386 C = 0.002150
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1946.670980 B =11733.871764 C =13022.233778
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.088 4.088
2 C 0.339 3.661
3 N -0.525 5.525
4 C 0.191 3.809
5 C -0.245 4.245
6 C 0.568 3.432
7 O -0.526 6.526
8 N -0.717 5.717
9 C 0.134 3.866
10 C -0.114 4.114
11 H 0.081 0.919
12 C 0.141 3.859
13 N -0.606 5.606
14 C -0.229 4.229
15 H 0.077 0.923
16 C -0.008 4.008
17 N -0.921 5.921
18 Si 0.911 3.089
19 H -0.289 1.289
20 H -0.290 1.290
21 H -0.281 1.281
22 C 0.183 3.817
23 C -0.110 4.110
24 H 0.068 0.932
25 C -0.134 4.134
26 C 0.268 3.732
27 C -0.119 4.119
28 C -0.164 4.164
29 C -0.147 4.147
30 N -0.522 5.522
31 H 0.090 0.910
32 H 0.088 0.912
33 H 0.089 0.911
34 H 0.174 0.826
35 H 0.400 0.600
36 H 0.069 0.931
37 H 0.072 0.928
38 H 0.019 0.981
39 H 0.035 0.965
40 H 0.252 0.748
41 H 0.049 0.951
42 H 0.042 0.958
43 H 0.044 0.956
44 H 0.054 0.946
45 H 0.054 0.946
46 H 0.149 0.851
47 H 0.098 0.902
48 H 0.106 0.894
49 H 0.091 0.909
50 H 0.103 0.897
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.868 -16.785 4.603 24.238
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C 0.073 3.927
3 N -0.239 5.239
4 C 0.023 3.977
5 C -0.253 4.253
6 C 0.353 3.647
7 O -0.404 6.404
8 N -0.368 5.368
9 C 0.010 3.990
10 C -0.134 4.134
11 H 0.099 0.901
12 C 0.015 3.985
13 N -0.332 5.332
14 C -0.358 4.358
15 H 0.095 0.905
16 C -0.204 4.204
17 N -0.569 5.569
18 Si 0.742 3.258
19 H -0.216 1.216
20 H -0.217 1.217
21 H -0.207 1.207
22 C 0.059 3.941
23 C -0.130 4.130
24 H 0.086 0.914
25 C -0.192 4.192
26 C 0.122 3.878
27 C -0.138 4.138
28 C -0.201 4.201
29 C -0.185 4.185
30 N -0.237 5.237
31 H 0.108 0.892
32 H 0.106 0.894
33 H 0.108 0.892
34 H 0.191 0.809
35 H 0.235 0.765
36 H 0.087 0.913
37 H 0.090 0.910
38 H 0.037 0.963
39 H 0.053 0.947
40 H 0.063 0.937
41 H 0.067 0.933
42 H 0.060 0.940
43 H 0.063 0.937
44 H 0.073 0.927
45 H 0.073 0.927
46 H 0.166 0.834
47 H 0.116 0.884
48 H 0.124 0.876
49 H 0.109 0.891
50 H 0.122 0.878
Dipole moment (debyes) X Y Z Total
from point charges -17.278 -17.306 4.487 24.863
hybrid contribution 0.806 1.604 -0.475 1.857
sum -16.472 -15.702 4.012 23.108
Atomic orbital electron populations
1.20645 0.85254 1.04506 1.04214 1.23514 0.98453 0.83230 0.87530
1.68306 1.09646 1.30048 1.15945 1.23533 0.89685 0.97721 0.86713
1.21557 0.96277 0.96025 1.11428 1.17677 0.85701 0.84256 0.77062
1.90729 1.69340 1.30769 1.49585 1.45993 1.08428 1.08554 1.73798
1.21470 0.77480 0.97655 1.02352 1.22703 0.97398 0.93179 1.00134
0.90078 1.21592 0.93178 0.90377 0.93354 1.44454 1.18035 1.15041
1.55678 1.19044 1.03387 0.91121 1.22204 0.90501 1.24799 0.96705
0.98732 1.00178 1.69953 1.08956 1.35219 1.42735 0.86131 0.76820
0.83695 0.79183 1.21602 1.21662 1.20711 1.21220 0.90725 0.88336
0.93854 1.22436 0.93065 1.01032 0.96422 0.91366 1.21698 1.01145
1.00548 0.95816 1.20982 0.88363 0.93818 0.84666 1.21307 1.01079
0.86152 1.05266 1.23052 0.99512 0.96739 1.00825 1.22899 1.02779
1.01622 0.91181 1.68101 1.09032 1.30120 1.16445 0.89202 0.89351
0.89214 0.80874 0.76539 0.91282 0.91002 0.96297 0.94676 0.93734
0.93283 0.94016 0.93668 0.92732 0.92701 0.83404 0.88353 0.87567
0.89060 0.87827
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.09 -0.58 10.31 36.01 0.37 -0.21 16
2 C 0.34 3.55 7.64 -157.07 -1.20 2.35 16
3 N -0.53 -5.85 10.32 -10.39 -0.11 -5.96 16
4 C 0.19 2.00 10.80 -16.77 -0.18 1.82 16
5 C -0.25 -2.88 5.91 -104.69 -0.62 -3.50 16
6 C 0.57 7.29 7.75 -12.34 -0.10 7.19 16
7 O -0.53 -7.94 13.56 5.32 0.07 -7.87 16
8 N -0.72 -8.44 5.46 -61.25 -0.33 -8.77 16
9 C 0.13 1.78 5.13 -4.04 -0.02 1.76 16
10 C -0.11 -1.78 2.50 -88.46 -0.22 -2.00 16
11 H 0.08 1.24 8.05 -51.93 -0.42 0.82 16
12 C 0.14 2.71 6.65 -2.53 -0.02 2.70 16
13 N -0.61 -14.95 3.39 -170.07 -0.58 -15.53 16
14 C -0.23 -6.26 10.28 -15.06 -0.15 -6.42 16
15 H 0.08 2.03 7.83 -52.48 -0.41 1.62 16
16 C -0.01 -0.22 5.49 -17.43 -0.10 -0.31 16
17 N -0.92 -26.68 10.31 55.49 0.57 -26.11 16
18 Si 0.91 21.86 29.55 -169.99 -5.02 16.84 16
19 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16
20 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16
21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16
22 C 0.18 4.28 4.97 -3.07 -0.02 4.26 16
23 C -0.11 -1.90 3.02 -88.79 -0.27 -2.17 16
24 H 0.07 1.15 8.04 -51.93 -0.42 0.73 16
25 C -0.13 -2.00 9.16 37.16 0.34 -1.66 16
26 C 0.27 3.21 6.53 -81.81 -0.53 2.68 16
27 C -0.12 -1.33 4.75 -91.77 -0.44 -1.76 16
28 C -0.16 -1.46 10.05 -26.64 -0.27 -1.73 16
29 C -0.15 -1.42 10.24 -26.65 -0.27 -1.69 16
30 N -0.52 -5.93 9.34 -6.67 -0.06 -5.99 16
31 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16
32 H 0.09 0.49 8.14 -51.92 -0.42 0.07 16
33 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16
34 H 0.17 1.36 6.57 -52.49 -0.35 1.01 16
35 H 0.40 3.96 6.64 -40.82 -0.27 3.69 16
36 H 0.07 0.90 8.10 -51.93 -0.42 0.48 16
37 H 0.07 1.04 7.96 -51.93 -0.41 0.62 16
38 H 0.02 0.38 7.91 -51.93 -0.41 -0.03 16
39 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16
40 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16
41 H 0.05 1.27 7.00 -51.93 -0.36 0.90 16
42 H 0.04 1.10 7.50 -51.93 -0.39 0.71 16
43 H 0.04 0.57 8.10 -51.93 -0.42 0.15 16
44 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16
45 H 0.05 0.84 8.06 -51.93 -0.42 0.43 16
46 H 0.15 1.81 6.14 -51.93 -0.32 1.49 16
47 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16
48 H 0.11 0.96 7.58 -51.93 -0.39 0.57 16
49 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16
50 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16
LS Contribution 403.36 15.07 6.08 6.08
Total: -1.00 -32.28 403.36 -11.00 -43.27
By element:
Atomic # 1 Polarization: 10.68 SS G_CDS: -7.93 Total: 2.75 kcal
Atomic # 6 Polarization: 4.98 SS G_CDS: -3.69 Total: 1.29 kcal
Atomic # 7 Polarization: -61.85 SS G_CDS: -0.51 Total: -62.36 kcal
Atomic # 8 Polarization: -7.94 SS G_CDS: 0.07 Total: -7.87 kcal
Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal
Total LS contribution 6.08 Total: 6.08 kcal
Total: -32.28 -11.00 -43.27 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001093168514.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 101.459 kcal
(2) G-P(sol) polarization free energy of solvation -32.275 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.184 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.998 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.273 kcal
(6) G-S(sol) free energy of system = (1) + (5) 58.187 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.97 seconds