Wall clock time and date at job start Wed Apr 1 2020 03:40:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 C 1.50700 * 109.46880 * 2 1
4 4 N 1.32164 * 120.53462 * 264.47420 * 3 2 1
5 5 C 1.31851 * 120.96361 * 180.28962 * 4 3 2
6 6 N 1.31881 * 122.09962 * 359.75380 * 5 4 3
7 7 C 1.32133 * 120.96350 * 359.97317 * 6 5 4
8 8 C 1.39925 * 120.53995 * 84.24014 * 3 2 1
9 9 C 1.47829 * 120.93748 * 359.97107 * 8 3 2
10 10 O 1.21551 * 120.00353 * 353.80105 * 9 8 3
11 11 N 1.34778 * 119.99806 * 173.79328 * 9 8 3
12 12 C 1.46503 * 119.99604 * 179.97438 * 11 9 8
13 13 C 1.53005 * 109.46724 * 180.02562 * 12 11 9
14 14 C 1.53357 * 111.69543 * 299.84051 * 13 12 11
15 15 C 1.54265 * 106.47009 * 242.43848 * 14 13 12
16 16 C 1.54683 * 104.11259 * 333.96677 * 15 14 13
17 17 C 1.54576 * 111.31577 * 180.02562 * 13 12 11
18 18 H 1.08996 * 111.92945 * 18.72106 * 17 13 12
19 19 N 1.46893 * 107.36697 * 255.62456 * 17 13 12
20 20 C 1.36935 * 125.25099 * 181.61467 * 19 17 13
21 21 H 1.08007 * 119.99650 * 9.50607 * 20 19 17
22 22 C 1.38810 * 120.00187 * 189.50264 * 20 19 17
23 23 N 1.31618 * 120.00032 * 8.52765 * 22 20 19
24 24 Si 1.86803 * 120.00132 * 188.52746 * 22 20 19
25 25 H 1.48502 * 109.47276 * 84.99415 * 24 22 20
26 26 H 1.48496 * 109.47054 * 204.99776 * 24 22 20
27 27 H 1.48507 * 109.47134 * 324.99308 * 24 22 20
28 28 C 1.46734 * 109.49945 * 1.88303 * 19 17 13
29 29 C 1.53861 * 111.25841 * 63.56400 * 13 12 11
30 30 H 1.09003 * 109.46793 * 180.02562 * 1 2 3
31 31 H 1.08999 * 109.47126 * 300.00258 * 1 2 3
32 32 H 1.09002 * 109.46816 * 60.00279 * 1 2 3
33 33 H 1.08999 * 109.47126 * 239.99741 * 2 1 3
34 34 H 1.09002 * 109.46816 * 119.99721 * 2 1 3
35 35 H 1.08009 * 118.94870 * 179.73065 * 5 4 3
36 36 H 1.07998 * 120.53656 * 179.97438 * 7 6 5
37 37 H 0.97000 * 120.00328 * 0.02562 * 11 9 8
38 38 H 1.08997 * 109.46955 * 60.00935 * 12 11 9
39 39 H 1.09003 * 109.47554 * 300.00114 * 12 11 9
40 40 H 1.09007 * 110.05469 * 1.69021 * 14 13 12
41 41 H 1.08997 * 110.05757 * 123.18183 * 14 13 12
42 42 H 1.09000 * 110.50059 * 92.61800 * 15 14 13
43 43 H 1.08993 * 110.50416 * 215.17678 * 15 14 13
44 44 H 1.09001 * 110.61207 * 278.82954 * 16 15 14
45 45 H 1.09001 * 110.61284 * 155.84691 * 16 15 14
46 46 H 0.96999 * 120.00398 * 180.02562 * 23 22 20
47 47 H 1.09004 * 110.04389 * 100.28220 * 28 19 17
48 48 H 1.09004 * 110.04008 * 221.74297 * 28 19 17
49 49 H 1.08996 * 110.57209 * 212.51077 * 29 13 12
50 50 H 1.09002 * 110.57160 * 335.23807 * 29 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0323 1.4208 0.0000
4 7 2.3595 2.0174 -1.1331
5 6 2.8052 3.2582 -1.1424
6 7 2.9417 3.9622 -0.0355
7 6 2.6329 3.4458 1.1409
8 6 2.1553 2.1315 1.1991
9 6 1.7965 1.5096 2.4913
10 8 1.2830 0.4082 2.5140
11 7 2.0390 2.1640 3.6444
12 6 1.6829 1.5479 4.9250
13 6 2.0605 2.4926 6.0678
14 6 3.5643 2.7928 6.0818
15 6 4.1064 2.2494 7.4199
16 6 2.8818 2.2827 8.3643
17 6 1.7029 1.8827 7.4424
18 1 1.5625 0.8033 7.3847
19 7 0.4950 2.5657 7.9243
20 6 -0.1204 2.3302 9.1247
21 1 0.3606 1.7083 9.8653
22 6 -1.3623 2.8907 9.3897
23 7 -2.0240 3.5068 8.4332
24 14 -2.0947 2.7706 11.1040
25 1 -1.5736 3.8790 11.9437
26 1 -3.5740 2.8677 11.0182
27 1 -1.7186 1.4693 11.7129
28 6 0.0460 3.5348 6.9182
29 6 1.2556 3.8020 5.9981
30 1 -0.3633 -1.0277 0.0005
31 1 -0.3633 0.5139 0.8900
32 1 -0.3633 0.5138 -0.8900
33 1 1.8934 -0.5139 -0.8900
34 1 1.8933 -0.5138 0.8900
35 1 3.0672 3.7126 -2.0866
36 1 2.7478 4.0283 2.0431
37 1 2.4486 3.0431 3.6263
38 1 2.2217 0.6071 5.0378
39 1 0.6099 1.3575 4.9508
40 1 4.0538 2.2893 5.2480
41 1 3.7314 3.8681 6.0198
42 1 4.4674 1.2280 7.2989
43 1 4.9010 2.8918 7.7991
44 1 2.7331 3.2856 8.7647
45 1 2.9999 1.5598 9.1716
46 1 -2.8916 3.8989 8.6185
47 1 -0.7804 3.1191 6.3417
48 1 -0.2647 4.4602 7.4034
49 1 1.8488 4.6365 6.3720
50 1 0.9257 3.9950 4.9773
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001094578564.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:40:15
Heat of formation + Delta-G solvation = 29.864078 kcal
Electronic energy + Delta-G solvation = -31000.305372 eV
Core-core repulsion = 27027.783736 eV
Total energy + Delta-G solvation = -3972.521636 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.195 amu
Computer time = 1.11 seconds
Orbital eigenvalues (eV)
-41.63653 -40.01341 -38.89973 -35.65445 -34.62367 -34.04204 -33.24486 -31.90091
-31.23979 -30.22544 -27.96172 -26.75466 -25.77014 -25.24335 -24.18481 -23.86717
-22.12417 -21.27760 -20.15589 -19.91917 -18.68161 -18.13147 -17.71465 -17.15843
-16.73661 -15.75674 -15.58656 -15.04782 -15.04510 -14.75129 -14.41577 -14.32081
-14.17414 -14.01830 -13.57353 -13.46810 -13.21190 -12.93651 -12.71048 -12.54897
-11.93892 -11.90737 -11.71888 -11.65744 -11.37132 -11.22215 -11.12440 -10.91655
-10.78796 -10.74902 -10.71150 -10.32389 -10.17327 -10.08687 -9.94095 -9.88016
-9.78294 -9.67113 -9.60964 -9.58138 -8.99529 -8.57543 -6.81054 -5.74631
-3.07783 0.13667 0.67639 2.67855 2.97450 3.39007 3.44525 3.45975
3.47986 3.66845 3.71025 4.00767 4.40840 4.48135 4.56898 4.82661
4.89930 4.93229 4.96018 5.06046 5.23866 5.28091 5.45641 5.48727
5.49871 5.54048 5.69828 5.75553 5.80692 5.84521 5.89597 5.95592
5.99553 6.03643 6.05990 6.10675 6.18107 6.23693 6.32069 6.35584
6.40674 6.52288 6.56823 6.61545 6.70563 6.79887 7.06615 7.35802
7.51935 7.60391 7.66262 7.79265 8.05068 8.26638 9.20783 9.82498
10.47551 11.37413
Molecular weight = 344.20amu
Principal moments of inertia in cm(-1)
A = 0.015432 B = 0.002764 C = 0.002603
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1813.969698 B =10126.344984 C =10753.155831
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.133 4.133
2 C -0.083 4.083
3 C 0.238 3.762
4 N -0.524 5.524
5 C 0.314 3.686
6 N -0.527 5.527
7 C 0.185 3.815
8 C -0.240 4.240
9 C 0.563 3.437
10 O -0.520 6.520
11 N -0.714 5.714
12 C 0.142 3.858
13 C -0.082 4.082
14 C -0.112 4.112
15 C -0.122 4.122
16 C -0.131 4.131
17 C 0.173 3.827
18 H 0.048 0.952
19 N -0.594 5.594
20 C -0.227 4.227
21 H 0.076 0.924
22 C -0.006 4.006
23 N -0.918 5.918
24 Si 0.909 3.091
25 H -0.289 1.289
26 H -0.292 1.292
27 H -0.282 1.282
28 C 0.178 3.822
29 C -0.135 4.135
30 H 0.066 0.934
31 H 0.065 0.935
32 H 0.048 0.952
33 H 0.079 0.921
34 H 0.112 0.888
35 H 0.201 0.799
36 H 0.171 0.829
37 H 0.397 0.603
38 H 0.069 0.931
39 H 0.078 0.922
40 H 0.057 0.943
41 H 0.064 0.936
42 H 0.058 0.942
43 H 0.056 0.944
44 H 0.071 0.929
45 H 0.054 0.946
46 H 0.252 0.748
47 H 0.029 0.971
48 H 0.060 0.940
49 H 0.061 0.939
50 H 0.056 0.944
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 12.268 -0.976 -15.982 20.171
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.191 4.191
2 C -0.121 4.121
3 C 0.091 3.909
4 N -0.238 5.238
5 C 0.027 3.973
6 N -0.240 5.240
7 C 0.018 3.982
8 C -0.247 4.247
9 C 0.348 3.652
10 O -0.398 6.398
11 N -0.365 5.365
12 C 0.019 3.981
13 C -0.083 4.083
14 C -0.149 4.149
15 C -0.161 4.161
16 C -0.170 4.170
17 C 0.065 3.935
18 H 0.065 0.935
19 N -0.318 5.318
20 C -0.355 4.355
21 H 0.094 0.906
22 C -0.203 4.203
23 N -0.565 5.565
24 Si 0.739 3.261
25 H -0.216 1.216
26 H -0.218 1.218
27 H -0.207 1.207
28 C 0.053 3.947
29 C -0.173 4.173
30 H 0.085 0.915
31 H 0.084 0.916
32 H 0.067 0.933
33 H 0.097 0.903
34 H 0.130 0.870
35 H 0.217 0.783
36 H 0.188 0.812
37 H 0.232 0.768
38 H 0.087 0.913
39 H 0.096 0.904
40 H 0.076 0.924
41 H 0.083 0.917
42 H 0.077 0.923
43 H 0.075 0.925
44 H 0.090 0.910
45 H 0.073 0.927
46 H 0.062 0.938
47 H 0.047 0.953
48 H 0.078 0.922
49 H 0.080 0.920
50 H 0.075 0.925
Dipole moment (debyes) X Y Z Total
from point charges 11.899 -1.287 -16.723 20.565
hybrid contribution -0.446 0.286 1.649 1.732
sum 11.453 -1.001 -15.074 18.958
Atomic orbital electron populations
1.21573 0.92952 1.02681 1.01914 1.20852 0.97604 0.88820 1.04803
1.22058 0.85723 0.96683 0.86408 1.68419 1.13703 1.12042 1.29616
1.25232 0.88361 0.86477 0.97184 1.68452 1.18217 1.38277 0.99101
1.23494 0.87170 0.90906 0.96671 1.21695 1.08512 0.97889 0.96648
1.17700 0.79154 0.85354 0.82970 1.90759 1.42734 1.19419 1.86881
1.45972 1.62857 1.21582 1.06108 1.21421 1.01450 0.95397 0.79805
1.21873 0.94997 0.96295 0.95148 1.22161 0.94210 1.00732 0.97835
1.22302 0.98092 1.00114 0.95545 1.22996 0.94394 1.01978 0.97681
1.21516 0.87992 0.95028 0.88991 0.93453 1.44317 1.27924 1.41796
1.17774 1.18977 0.98955 1.27272 0.90302 0.90643 1.24812 0.96425
1.01301 0.97763 1.69962 1.14201 1.41949 1.30404 0.86187 0.78175
0.77746 0.83948 1.21619 1.21789 1.20730 1.21096 0.90876 0.94164
0.88569 1.22837 0.99273 0.95136 1.00080 0.91529 0.91622 0.93292
0.90267 0.86978 0.78267 0.81187 0.76753 0.91264 0.90370 0.92396
0.91684 0.92331 0.92472 0.91017 0.92704 0.93761 0.95339 0.92219
0.92009 0.92506
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -1.45 9.52 37.16 0.35 -1.09 16
2 C -0.08 -0.90 5.49 -27.88 -0.15 -1.05 16
3 C 0.24 2.72 6.12 -81.82 -0.50 2.22 16
4 N -0.52 -5.69 10.36 -10.48 -0.11 -5.80 16
5 C 0.31 2.91 12.27 -92.03 -1.13 1.78 16
6 N -0.53 -5.29 10.42 -14.24 -0.15 -5.44 16
7 C 0.18 1.77 10.80 -16.78 -0.18 1.59 16
8 C -0.24 -2.68 5.91 -104.70 -0.62 -3.30 16
9 C 0.56 7.14 7.72 -12.34 -0.10 7.05 16
10 O -0.52 -7.91 12.06 5.32 0.06 -7.84 16
11 N -0.71 -8.32 4.59 -61.25 -0.28 -8.60 16
12 C 0.14 2.04 4.45 -4.04 -0.02 2.02 16
13 C -0.08 -1.23 0.53 -153.04 -0.08 -1.31 16
14 C -0.11 -1.37 5.59 -25.88 -0.14 -1.51 16
15 C -0.12 -1.60 6.85 -25.18 -0.17 -1.77 16
16 C -0.13 -2.21 6.22 -24.84 -0.15 -2.36 16
17 C 0.17 3.27 3.59 -65.88 -0.24 3.03 16
18 H 0.05 0.94 7.93 -51.93 -0.41 0.53 16
19 N -0.59 -14.11 2.99 -162.30 -0.48 -14.60 16
20 C -0.23 -6.05 9.93 -15.06 -0.15 -6.20 16
21 H 0.08 1.97 7.84 -52.48 -0.41 1.56 16
22 C -0.01 -0.17 5.41 -17.43 -0.09 -0.27 16
23 N -0.92 -26.37 10.55 55.49 0.59 -25.78 16
24 Si 0.91 21.76 29.56 -169.99 -5.03 16.74 16
25 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16
26 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16
27 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16
28 C 0.18 4.05 5.37 -3.23 -0.02 4.03 16
29 C -0.13 -2.22 5.82 -25.60 -0.15 -2.37 16
30 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16
31 H 0.06 0.84 6.92 -51.93 -0.36 0.48 16
32 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16
33 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16
34 H 0.11 1.33 5.92 -51.93 -0.31 1.03 16
35 H 0.20 1.11 8.06 -52.48 -0.42 0.69 16
36 H 0.17 1.17 6.58 -52.49 -0.35 0.83 16
37 H 0.40 3.71 5.83 -40.82 -0.24 3.47 16
38 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16
39 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16
40 H 0.06 0.62 7.48 -51.92 -0.39 0.23 16
41 H 0.06 0.75 7.27 -51.93 -0.38 0.37 16
42 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16
43 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16
44 H 0.07 1.35 8.06 -51.93 -0.42 0.93 16
45 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16
46 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16
47 H 0.03 0.73 7.85 -51.93 -0.41 0.32 16
48 H 0.06 1.54 7.12 -51.93 -0.37 1.17 16
49 H 0.06 0.98 7.41 -51.93 -0.38 0.59 16
50 H 0.06 0.83 7.21 -51.93 -0.37 0.46 16
LS Contribution 388.35 15.07 5.85 5.85
Total: -1.00 -30.96 388.35 -10.82 -41.78
By element:
Atomic # 1 Polarization: 10.94 SS G_CDS: -7.73 Total: 3.20 kcal
Atomic # 6 Polarization: 4.03 SS G_CDS: -3.54 Total: 0.49 kcal
Atomic # 7 Polarization: -59.79 SS G_CDS: -0.44 Total: -60.23 kcal
Atomic # 8 Polarization: -7.91 SS G_CDS: 0.06 Total: -7.84 kcal
Atomic # 14 Polarization: 21.76 SS G_CDS: -5.03 Total: 16.74 kcal
Total LS contribution 5.85 Total: 5.85 kcal
Total: -30.96 -10.82 -41.78 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001094578564.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 71.648 kcal
(2) G-P(sol) polarization free energy of solvation -30.963 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.685 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.821 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.783 kcal
(6) G-S(sol) free energy of system = (1) + (5) 29.864 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.11 seconds