Wall clock time and date at job start Wed Apr 1 2020 03:40:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 C 1.50700 * 109.46880 * 2 1
4 4 N 1.32164 * 120.53462 * 264.47420 * 3 2 1
5 5 C 1.31851 * 120.96361 * 180.28962 * 4 3 2
6 6 N 1.31881 * 122.09962 * 359.75380 * 5 4 3
7 7 C 1.32133 * 120.96350 * 359.97317 * 6 5 4
8 8 C 1.39925 * 120.53995 * 84.24014 * 3 2 1
9 9 C 1.47829 * 120.93748 * 359.97107 * 8 3 2
10 10 O 1.21551 * 120.00353 * 353.80105 * 9 8 3
11 11 N 1.34778 * 119.99806 * 173.79328 * 9 8 3
12 12 C 1.46503 * 119.99604 * 179.97438 * 11 9 8
13 13 C 1.53005 * 109.46724 * 180.02562 * 12 11 9
14 14 C 1.53357 * 111.69543 * 299.84051 * 13 12 11
15 15 C 1.54265 * 106.47009 * 242.43848 * 14 13 12
16 16 C 1.54683 * 104.11259 * 333.96677 * 15 14 13
17 17 C 1.54576 * 111.31577 * 180.02562 * 13 12 11
18 18 H 1.08996 * 111.92945 * 18.72106 * 17 13 12
19 19 N 1.46893 * 107.36697 * 255.62456 * 17 13 12
20 20 C 1.36935 * 125.25099 * 181.61467 * 19 17 13
21 21 H 1.08007 * 119.99650 * 9.50607 * 20 19 17
22 22 C 1.38810 * 120.00187 * 189.50264 * 20 19 17
23 23 N 1.31618 * 120.00032 * 8.52765 * 22 20 19
24 24 Si 1.86803 * 120.00132 * 188.52746 * 22 20 19
25 25 H 1.48502 * 109.47276 * 84.99415 * 24 22 20
26 26 H 1.48496 * 109.47054 * 204.99776 * 24 22 20
27 27 H 1.48507 * 109.47134 * 324.99308 * 24 22 20
28 28 C 1.46734 * 109.49945 * 1.88303 * 19 17 13
29 29 C 1.53861 * 111.25841 * 63.56400 * 13 12 11
30 30 H 1.09003 * 109.46793 * 180.02562 * 1 2 3
31 31 H 1.08999 * 109.47126 * 300.00258 * 1 2 3
32 32 H 1.09002 * 109.46816 * 60.00279 * 1 2 3
33 33 H 1.08999 * 109.47126 * 239.99741 * 2 1 3
34 34 H 1.09002 * 109.46816 * 119.99721 * 2 1 3
35 35 H 1.08009 * 118.94870 * 179.73065 * 5 4 3
36 36 H 1.07998 * 120.53656 * 179.97438 * 7 6 5
37 37 H 0.97000 * 120.00328 * 0.02562 * 11 9 8
38 38 H 1.08997 * 109.46955 * 60.00935 * 12 11 9
39 39 H 1.09003 * 109.47554 * 300.00114 * 12 11 9
40 40 H 1.09007 * 110.05469 * 1.69021 * 14 13 12
41 41 H 1.08997 * 110.05757 * 123.18183 * 14 13 12
42 42 H 1.09000 * 110.50059 * 92.61800 * 15 14 13
43 43 H 1.08993 * 110.50416 * 215.17678 * 15 14 13
44 44 H 1.09001 * 110.61207 * 278.82954 * 16 15 14
45 45 H 1.09001 * 110.61284 * 155.84691 * 16 15 14
46 46 H 0.96999 * 120.00398 * 180.02562 * 23 22 20
47 47 H 1.09004 * 110.04389 * 100.28220 * 28 19 17
48 48 H 1.09004 * 110.04008 * 221.74297 * 28 19 17
49 49 H 1.08996 * 110.57209 * 212.51077 * 29 13 12
50 50 H 1.09002 * 110.57160 * 335.23807 * 29 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0323 1.4208 0.0000
4 7 2.3595 2.0174 -1.1331
5 6 2.8052 3.2582 -1.1424
6 7 2.9417 3.9622 -0.0355
7 6 2.6329 3.4458 1.1409
8 6 2.1553 2.1315 1.1991
9 6 1.7965 1.5096 2.4913
10 8 1.2830 0.4082 2.5140
11 7 2.0390 2.1640 3.6444
12 6 1.6829 1.5479 4.9250
13 6 2.0605 2.4926 6.0678
14 6 3.5643 2.7928 6.0818
15 6 4.1064 2.2494 7.4199
16 6 2.8818 2.2827 8.3643
17 6 1.7029 1.8827 7.4424
18 1 1.5625 0.8033 7.3847
19 7 0.4950 2.5657 7.9243
20 6 -0.1204 2.3302 9.1247
21 1 0.3606 1.7083 9.8653
22 6 -1.3623 2.8907 9.3897
23 7 -2.0240 3.5068 8.4332
24 14 -2.0947 2.7706 11.1040
25 1 -1.5736 3.8790 11.9437
26 1 -3.5740 2.8677 11.0182
27 1 -1.7186 1.4693 11.7129
28 6 0.0460 3.5348 6.9182
29 6 1.2556 3.8020 5.9981
30 1 -0.3633 -1.0277 0.0005
31 1 -0.3633 0.5139 0.8900
32 1 -0.3633 0.5138 -0.8900
33 1 1.8934 -0.5139 -0.8900
34 1 1.8933 -0.5138 0.8900
35 1 3.0672 3.7126 -2.0866
36 1 2.7478 4.0283 2.0431
37 1 2.4486 3.0431 3.6263
38 1 2.2217 0.6071 5.0378
39 1 0.6099 1.3575 4.9508
40 1 4.0538 2.2893 5.2480
41 1 3.7314 3.8681 6.0198
42 1 4.4674 1.2280 7.2989
43 1 4.9010 2.8918 7.7991
44 1 2.7331 3.2856 8.7647
45 1 2.9999 1.5598 9.1716
46 1 -2.8916 3.8989 8.6185
47 1 -0.7804 3.1191 6.3417
48 1 -0.2647 4.4602 7.4034
49 1 1.8488 4.6365 6.3720
50 1 0.9257 3.9950 4.9773
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001094578564.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:40:14
Heat of formation + Delta-G solvation = 11.887404 kcal
Electronic energy + Delta-G solvation = -31001.084899 eV
Core-core repulsion = 27027.783736 eV
Total energy + Delta-G solvation = -3973.301163 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.195 amu
Computer time = 1.01 seconds
Orbital eigenvalues (eV)
-42.45134 -41.24836 -40.03531 -36.67200 -35.98313 -35.28762 -34.08079 -33.48549
-32.40544 -31.61712 -29.27337 -28.33673 -26.74882 -26.03790 -25.71818 -25.26709
-22.94223 -22.46873 -21.69483 -21.18428 -19.87526 -19.05788 -18.94166 -18.43103
-17.84790 -16.86164 -16.70013 -16.62667 -16.30971 -16.02925 -15.60527 -15.29426
-15.15301 -15.08036 -14.89256 -14.55744 -14.43393 -14.23572 -14.07571 -13.53443
-13.43645 -13.36164 -12.90748 -12.83031 -12.76251 -12.58085 -12.55484 -12.41175
-12.04500 -12.00288 -11.85376 -11.70294 -11.62428 -11.49041 -11.38816 -11.36616
-11.06080 -10.79561 -10.75929 -10.62901 -10.38373 -10.07271 -8.79017 -7.84114
-5.17743 -0.64881 -0.09968 1.45099 1.46309 1.54230 1.74772 1.96611
2.50708 2.68514 2.92142 3.04699 3.25816 3.33266 3.48109 3.59043
3.68740 3.72213 3.77335 3.98356 4.20985 4.25455 4.29573 4.38309
4.41655 4.44696 4.48464 4.53893 4.62857 4.68794 4.73059 4.79457
4.88657 4.97136 4.99699 5.04193 5.10420 5.17739 5.19735 5.21970
5.26577 5.33585 5.39859 5.42374 5.49169 5.55555 5.64331 5.71838
5.79682 5.81351 6.25648 6.42030 6.91467 7.09581 7.14534 7.85219
8.47763 9.26437
Molecular weight = 344.20amu
Principal moments of inertia in cm(-1)
A = 0.015432 B = 0.002764 C = 0.002603
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1813.969698 B =10126.344984 C =10753.155831
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.128 4.128
2 C -0.080 4.080
3 C 0.228 3.772
4 N -0.536 5.536
5 C 0.317 3.683
6 N -0.535 5.535
7 C 0.193 3.807
8 C -0.252 4.252
9 C 0.565 3.435
10 O -0.551 6.551
11 N -0.701 5.701
12 C 0.155 3.845
13 C -0.067 4.067
14 C -0.103 4.103
15 C -0.112 4.112
16 C -0.126 4.126
17 C 0.157 3.843
18 H 0.035 0.965
19 N -0.613 5.613
20 C -0.231 4.231
21 H 0.077 0.923
22 C -0.066 4.066
23 N -0.949 5.949
24 Si 0.970 3.030
25 H -0.285 1.285
26 H -0.298 1.298
27 H -0.271 1.271
28 C 0.184 3.816
29 C -0.118 4.118
30 H 0.074 0.926
31 H 0.041 0.959
32 H 0.053 0.947
33 H 0.091 0.909
34 H 0.099 0.901
35 H 0.235 0.765
36 H 0.199 0.801
37 H 0.412 0.588
38 H 0.073 0.927
39 H 0.039 0.961
40 H 0.084 0.916
41 H 0.085 0.915
42 H 0.071 0.929
43 H 0.078 0.922
44 H 0.050 0.950
45 H 0.048 0.952
46 H 0.244 0.756
47 H -0.014 1.014
48 H 0.021 0.979
49 H 0.079 0.921
50 H 0.079 0.921
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 15.349 -0.220 -17.296 23.125
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.186 4.186
2 C -0.118 4.118
3 C 0.082 3.918
4 N -0.251 5.251
5 C 0.031 3.969
6 N -0.249 5.249
7 C 0.026 3.974
8 C -0.260 4.260
9 C 0.351 3.649
10 O -0.430 6.430
11 N -0.354 5.354
12 C 0.031 3.969
13 C -0.068 4.068
14 C -0.140 4.140
15 C -0.150 4.150
16 C -0.165 4.165
17 C 0.050 3.950
18 H 0.052 0.948
19 N -0.337 5.337
20 C -0.360 4.360
21 H 0.095 0.905
22 C -0.259 4.259
23 N -0.598 5.598
24 Si 0.799 3.201
25 H -0.212 1.212
26 H -0.225 1.225
27 H -0.196 1.196
28 C 0.059 3.941
29 C -0.156 4.156
30 H 0.093 0.907
31 H 0.060 0.940
32 H 0.072 0.928
33 H 0.110 0.890
34 H 0.117 0.883
35 H 0.251 0.749
36 H 0.216 0.784
37 H 0.250 0.750
38 H 0.091 0.909
39 H 0.058 0.942
40 H 0.103 0.897
41 H 0.103 0.897
42 H 0.090 0.910
43 H 0.097 0.903
44 H 0.069 0.931
45 H 0.066 0.934
46 H 0.054 0.946
47 H 0.004 0.996
48 H 0.039 0.961
49 H 0.097 0.903
50 H 0.097 0.903
Dipole moment (debyes) X Y Z Total
from point charges 15.038 -0.527 -18.047 23.497
hybrid contribution -1.419 0.010 2.022 2.470
sum 13.620 -0.517 -16.024 21.037
Atomic orbital electron populations
1.21507 0.93266 1.02928 1.00867 1.20788 0.97267 0.89027 1.04733
1.22160 0.85817 0.96924 0.86938 1.68478 1.14439 1.12905 1.29240
1.25962 0.86732 0.85872 0.98346 1.68571 1.18628 1.38303 0.99377
1.23923 0.85578 0.90197 0.97675 1.21534 1.10161 0.98785 0.95514
1.17932 0.78407 0.84949 0.83576 1.90756 1.44017 1.20910 1.87329
1.45715 1.62726 1.22082 1.04841 1.21077 0.99164 0.95738 0.80933
1.21746 0.97269 0.94835 0.92963 1.22150 0.91083 1.02404 0.98400
1.22263 0.96562 1.01646 0.94532 1.22827 0.95431 1.00341 0.97945
1.21820 0.86888 0.94251 0.92045 0.94755 1.44592 1.29135 1.42692
1.17252 1.19316 0.98959 1.26176 0.91580 0.90541 1.25581 0.97225
1.01968 1.01124 1.70177 1.14172 1.43410 1.32059 0.85208 0.76743
0.78049 0.80052 1.21209 1.22514 1.19633 1.20849 0.92627 0.91907
0.88706 1.22691 0.96727 0.96533 0.99667 0.90713 0.94031 0.92760
0.89009 0.88265 0.74949 0.78422 0.74977 0.90894 0.94242 0.89705
0.89665 0.91023 0.90286 0.93079 0.93353 0.94631 0.99556 0.96072
0.90275 0.90270
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.78 9.52 71.98 0.68 -2.10 16
2 C -0.08 -1.70 5.49 29.85 0.16 -1.54 16
3 C 0.23 4.93 6.12 42.92 0.26 5.19 16
4 N -0.54 -10.58 10.36 -187.06 -1.94 -12.52 16
5 C 0.32 4.96 12.27 180.84 2.22 7.17 16
6 N -0.54 -9.08 10.42 -198.98 -2.07 -11.15 16
7 C 0.19 3.13 10.80 85.07 0.92 4.05 16
8 C -0.25 -5.20 5.91 -19.91 -0.12 -5.31 16
9 C 0.57 13.73 7.72 86.78 0.67 14.40 16
10 O -0.55 -16.88 12.06 -3.88 -0.05 -16.93 16
11 N -0.70 -14.91 4.59 -465.97 -2.14 -17.05 16
12 C 0.15 4.32 4.45 86.38 0.38 4.70 16
13 C -0.07 -1.90 0.53 -51.23 -0.03 -1.93 16
14 C -0.10 -2.06 5.59 31.14 0.17 -1.89 16
15 C -0.11 -2.50 6.85 31.60 0.22 -2.28 16
16 C -0.13 -4.10 6.22 31.82 0.20 -3.90 16
17 C 0.16 5.93 3.59 46.11 0.17 6.10 16
18 H 0.03 1.39 7.93 -2.39 -0.02 1.37 16
19 N -0.61 -30.17 2.99 -667.39 -1.99 -32.17 16
20 C -0.23 -12.75 9.93 84.03 0.83 -11.91 16
21 H 0.08 4.09 7.84 -2.91 -0.02 4.07 16
22 C -0.07 -3.75 5.41 84.86 0.46 -3.29 16
23 N -0.95 -57.35 10.55 21.65 0.23 -57.12 16
24 Si 0.97 46.10 29.56 68.60 2.03 48.13 16
25 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16
26 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16
27 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16
28 C 0.18 8.77 5.37 86.78 0.47 9.24 16
29 C -0.12 -3.76 5.82 31.33 0.18 -3.58 16
30 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16
31 H 0.04 1.10 6.92 -2.39 -0.02 1.08 16
32 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16
33 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16
34 H 0.10 2.37 5.92 -2.39 -0.01 2.36 16
35 H 0.23 1.76 8.06 -2.91 -0.02 1.74 16
36 H 0.20 1.89 6.58 -2.91 -0.02 1.87 16
37 H 0.41 6.18 5.83 -92.71 -0.54 5.64 16
38 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16
39 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16
40 H 0.08 1.35 7.48 -2.38 -0.02 1.33 16
41 H 0.08 1.47 7.27 -2.39 -0.02 1.45 16
42 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16
43 H 0.08 1.49 8.14 -2.39 -0.02 1.48 16
44 H 0.05 1.88 8.06 -2.39 -0.02 1.86 16
45 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16
46 H 0.24 14.49 8.31 -92.71 -0.77 13.72 16
47 H -0.01 -0.75 7.85 -2.38 -0.02 -0.76 16
48 H 0.02 1.14 7.12 -2.38 -0.02 1.12 16
49 H 0.08 2.30 7.41 -2.39 -0.02 2.28 16
50 H 0.08 2.17 7.21 -2.39 -0.02 2.16 16
Total: -1.00 -72.50 388.35 2.34 -70.17
By element:
Atomic # 1 Polarization: 15.10 SS G_CDS: 0.41 Total: 15.51 kcal
Atomic # 6 Polarization: 5.27 SS G_CDS: 7.85 Total: 13.13 kcal
Atomic # 7 Polarization: -122.09 SS G_CDS: -7.92 Total: -130.01 kcal
Atomic # 8 Polarization: -16.88 SS G_CDS: -0.05 Total: -16.93 kcal
Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.13 kcal
Total: -72.50 2.34 -70.17 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001094578564.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 82.054 kcal
(2) G-P(sol) polarization free energy of solvation -72.502 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.552 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.335 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.167 kcal
(6) G-S(sol) free energy of system = (1) + (5) 11.887 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.01 seconds