Wall clock time and date at job start Wed Apr 1 2020 02:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30787 * 125.72586 * 2 1 4 4 C 1.34426 * 109.32129 * 179.67196 * 3 2 1 5 5 C 1.33860 * 107.79830 * 0.02562 * 4 3 2 6 6 N 1.34407 * 125.72076 * 179.69848 * 2 1 3 7 7 C 1.46473 * 128.44802 * 0.48695 * 6 2 1 8 8 C 1.53279 * 108.69512 * 162.61948 * 7 6 2 9 9 H 1.09001 * 109.43995 * 290.69319 * 8 7 6 10 10 C 1.50698 * 109.43243 * 170.83545 * 8 7 6 11 11 O 1.21284 * 119.99809 * 359.76194 * 10 8 7 12 12 N 1.34773 * 120.00375 * 179.76454 * 10 8 7 13 13 C 1.46501 * 120.00288 * 180.02562 * 12 10 8 14 14 H 1.08994 * 110.55813 * 36.92694 * 13 12 10 15 15 C 1.54856 * 110.62532 * 159.82632 * 13 12 10 16 16 C 1.56224 * 103.27028 * 118.45350 * 15 13 12 17 17 H 1.09001 * 116.06809 * 159.21295 * 16 15 13 18 18 C 1.55846 * 105.14454 * 288.26979 * 16 15 13 19 19 C 1.54852 * 103.44506 * 71.83437 * 18 16 15 20 20 C 1.55839 * 103.44803 * 359.97438 * 19 18 16 21 21 H 1.08998 * 116.12679 * 159.15085 * 20 19 18 22 22 N 1.50237 * 101.05117 * 32.94238 * 20 19 18 23 23 C 1.36936 * 130.84327 * 126.04613 * 22 20 19 24 24 H 1.08005 * 119.99893 * 0.02562 * 23 22 20 25 25 C 1.38811 * 120.00190 * 180.02562 * 23 22 20 26 26 N 1.31615 * 120.00006 * 0.02562 * 25 23 22 27 27 Si 1.86800 * 119.99782 * 180.02562 * 25 23 22 28 28 H 1.48503 * 109.47558 * 359.97438 * 27 25 23 29 29 H 1.48495 * 109.47389 * 120.00363 * 27 25 23 30 30 H 1.48500 * 109.47020 * 240.00057 * 27 25 23 31 31 C 1.53122 * 109.70442 * 50.76708 * 8 7 6 32 32 C 1.50708 * 128.67810 * 180.02562 * 5 4 3 33 33 H 1.09005 * 109.47435 * 90.01883 * 1 2 3 34 34 H 1.08995 * 109.47225 * 210.02252 * 1 2 3 35 35 H 1.09003 * 109.47260 * 330.01991 * 1 2 3 36 36 H 1.08004 * 126.09661 * 179.97438 * 4 3 2 37 37 H 1.09002 * 109.59870 * 42.85836 * 7 6 2 38 38 H 1.08998 * 109.72778 * 282.46222 * 7 6 2 39 39 H 0.97002 * 119.99952 * 359.97438 * 12 10 8 40 40 H 1.09001 * 110.61968 * 236.97534 * 15 13 12 41 41 H 1.08993 * 110.62750 * 0.02562 * 15 13 12 42 42 H 1.09001 * 110.62074 * 190.32058 * 18 16 15 43 43 H 1.08996 * 110.62705 * 313.33787 * 18 16 15 44 44 H 1.09007 * 110.62303 * 241.50742 * 19 18 16 45 45 H 1.08994 * 110.62644 * 118.49310 * 19 18 16 46 46 H 0.97007 * 119.99745 * 179.97438 * 26 25 23 47 47 H 1.09008 * 109.49436 * 170.13842 * 31 8 7 48 48 H 1.08997 * 109.52778 * 50.05180 * 31 8 7 49 49 H 1.09002 * 109.74261 * 283.91833 * 32 5 4 50 50 H 1.08996 * 109.75048 * 44.63667 * 32 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2706 1.0618 0.0000 4 6 3.5601 0.6821 0.0073 5 6 3.5927 -0.6561 0.0113 6 7 2.2917 -1.0912 0.0057 7 6 1.8921 -2.5004 0.0034 8 6 3.0941 -3.3512 -0.4218 9 1 3.3096 -3.1738 -1.4754 10 6 2.7745 -4.8093 -0.2150 11 8 1.6955 -5.1361 0.2320 12 7 3.6877 -5.7502 -0.5268 13 6 3.3768 -7.1677 -0.3264 14 1 2.3311 -7.3670 -0.5607 15 6 4.3078 -8.0573 -1.1866 16 6 5.0751 -8.9065 -0.1233 17 1 5.5224 -9.8334 -0.4826 18 6 6.0555 -7.9090 0.5642 19 6 5.1216 -7.0193 1.4211 20 6 3.7042 -7.5999 1.1341 21 1 2.9354 -7.3770 1.8740 22 7 4.0232 -9.0550 0.9387 23 6 3.5123 -10.1727 1.5426 24 1 2.7464 -10.0762 2.2980 25 6 3.9788 -11.4300 1.1841 26 7 4.9126 -11.5477 0.2640 27 14 3.2814 -12.9548 2.0075 28 1 2.2519 -12.5544 3.0000 29 1 2.6651 -13.8335 0.9813 30 1 4.3733 -13.6886 2.6963 31 6 4.3170 -2.9736 0.4188 32 6 4.7918 -1.5690 0.0202 33 1 -0.3634 -0.0003 -1.0277 34 1 -0.3633 -0.8897 0.5142 35 1 -0.3634 0.8902 0.5135 36 1 4.4170 1.3396 0.0087 37 1 1.0730 -2.6470 -0.7007 38 1 1.5718 -2.7936 1.0031 39 1 4.5506 -5.4888 -0.8847 40 1 3.7236 -8.6999 -1.8453 41 1 5.0011 -7.4439 -1.7619 42 1 6.7647 -8.4424 1.1971 43 1 6.5791 -7.3102 -0.1810 44 1 5.1821 -5.9791 1.1008 45 1 5.3678 -7.1113 2.4788 46 1 5.2388 -12.4263 0.0137 47 1 5.1171 -3.6921 0.2402 48 1 4.0496 -2.9821 1.4754 49 1 5.2394 -1.5986 -0.9732 50 1 5.5232 -1.2092 0.7438 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001095928295.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:57 Heat of formation + Delta-G solvation = 46.793600 kcal Electronic energy + Delta-G solvation = -31020.959849 eV Core-core repulsion = 27049.172332 eV Total energy + Delta-G solvation = -3971.787517 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.37127 -41.58267 -40.06638 -37.24983 -35.54714 -34.37597 -34.12112 -32.28485 -31.01756 -30.95007 -30.57246 -29.12313 -27.34158 -26.34017 -25.40961 -23.49214 -22.86492 -22.13174 -21.56872 -21.00127 -20.17722 -19.88753 -18.93651 -18.31427 -17.45050 -17.01880 -16.81729 -16.73092 -16.36607 -15.99254 -15.67666 -15.36294 -15.08605 -14.94681 -14.69734 -14.45838 -14.06792 -13.92825 -13.89279 -13.73425 -13.47772 -13.23418 -13.20561 -12.90294 -12.87600 -12.80463 -12.78671 -12.57614 -12.36155 -12.13261 -11.98810 -11.94290 -11.87472 -11.54144 -11.19093 -11.05913 -10.92382 -10.80333 -10.77601 -10.49663 -9.99745 -9.11291 -8.85737 -7.80722 -5.19513 1.08433 1.44936 1.46008 1.55115 1.57634 1.65132 2.14031 2.24062 2.49554 3.24526 3.32738 3.46447 3.57094 3.59673 3.64766 3.81408 3.93744 4.03936 4.12209 4.15909 4.20181 4.25763 4.35396 4.43003 4.45153 4.49538 4.58989 4.61720 4.67420 4.70629 4.72957 4.81231 4.86119 4.95183 4.99218 5.01532 5.03972 5.11430 5.16742 5.17413 5.23803 5.34165 5.47337 5.48485 5.55199 5.76451 5.85653 5.90037 6.24941 6.28563 6.58767 7.05577 7.13447 7.26589 7.69044 8.54484 9.26006 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.025172 B = 0.002412 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.066268 B =11607.643695 C =12183.894603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.191 3.809 3 N -0.531 5.531 4 C -0.048 4.048 5 C -0.028 4.028 6 N -0.452 5.452 7 C 0.124 3.876 8 C -0.105 4.105 9 H 0.130 0.870 10 C 0.522 3.478 11 O -0.582 6.582 12 N -0.692 5.692 13 C 0.148 3.852 14 H 0.052 0.948 15 C -0.125 4.125 16 C 0.136 3.864 17 H 0.118 0.882 18 C -0.126 4.126 19 C -0.114 4.114 20 C 0.118 3.882 21 H 0.064 0.936 22 N -0.619 5.619 23 C -0.222 4.222 24 H 0.070 0.930 25 C -0.063 4.063 26 N -0.943 5.943 27 Si 0.973 3.027 28 H -0.275 1.275 29 H -0.292 1.292 30 H -0.292 1.292 31 C -0.114 4.114 32 C -0.036 4.036 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.092 0.908 36 H 0.184 0.816 37 H 0.100 0.900 38 H 0.083 0.917 39 H 0.416 0.584 40 H 0.044 0.956 41 H 0.100 0.900 42 H 0.032 0.968 43 H 0.091 0.909 44 H 0.093 0.907 45 H 0.039 0.961 46 H 0.249 0.751 47 H 0.108 0.892 48 H 0.063 0.937 49 H 0.108 0.892 50 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.636 21.875 -4.907 22.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.071 4.071 3 N -0.251 5.251 4 C -0.194 4.194 5 C -0.143 4.143 6 N -0.136 5.136 7 C 0.002 3.998 8 C -0.127 4.127 9 H 0.148 0.852 10 C 0.308 3.692 11 O -0.462 6.462 12 N -0.344 5.344 13 C 0.041 3.959 14 H 0.070 0.930 15 C -0.165 4.165 16 C 0.030 3.970 17 H 0.135 0.865 18 C -0.165 4.165 19 C -0.154 4.154 20 C 0.010 3.990 21 H 0.082 0.918 22 N -0.341 5.341 23 C -0.352 4.352 24 H 0.087 0.913 25 C -0.256 4.256 26 N -0.592 5.592 27 Si 0.802 3.198 28 H -0.200 1.200 29 H -0.219 1.219 30 H -0.219 1.219 31 C -0.152 4.152 32 C -0.074 4.074 33 H 0.109 0.891 34 H 0.101 0.899 35 H 0.111 0.889 36 H 0.201 0.799 37 H 0.118 0.882 38 H 0.102 0.898 39 H 0.255 0.745 40 H 0.063 0.937 41 H 0.118 0.882 42 H 0.051 0.949 43 H 0.109 0.891 44 H 0.111 0.889 45 H 0.058 0.942 46 H 0.058 0.942 47 H 0.126 0.874 48 H 0.082 0.918 49 H 0.126 0.874 50 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 0.488 21.985 -4.532 22.452 hybrid contribution -0.115 -1.964 0.528 2.037 sum 0.373 20.021 -4.003 20.420 Atomic orbital electron populations 1.20282 0.83307 1.04618 1.04416 1.23653 0.96846 0.81149 1.05448 1.70418 1.03213 1.29249 1.22269 1.22210 0.94809 0.93027 1.09404 1.21670 0.86362 0.95678 1.10560 1.45370 1.06690 1.07162 1.54362 1.21666 0.97768 0.76290 1.04088 1.21496 0.96795 0.89677 1.04699 0.85218 1.20630 0.83712 0.88107 0.76754 1.90735 1.25497 1.83493 1.46509 1.45913 1.18644 1.05137 1.64671 1.22065 0.98045 0.79515 0.96319 0.92950 1.23175 0.98389 0.97630 0.97311 1.23758 0.88759 0.96879 0.87559 0.86451 1.22949 0.97125 0.97479 0.98927 1.22812 0.94718 0.99098 0.98724 1.23320 0.96082 0.84529 0.95033 0.91790 1.46745 1.43521 0.99895 1.43976 1.19309 1.15808 0.84740 1.15306 0.91258 1.25373 1.00129 0.99544 1.00515 1.69669 1.32595 1.22048 1.34931 0.85081 0.77358 0.79801 0.77525 1.19984 1.21944 1.21878 1.21737 0.95989 0.98290 0.99218 1.20358 0.91885 0.90248 1.04904 0.89060 0.89901 0.88923 0.79853 0.88161 0.89829 0.74543 0.93673 0.88213 0.94890 0.89077 0.88913 0.94233 0.94167 0.87395 0.91824 0.87382 0.87342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.01 10.24 71.23 0.73 -0.28 16 2 C 0.19 4.15 7.94 138.24 1.10 5.25 16 3 N -0.53 -13.46 11.27 -188.78 -2.13 -15.59 16 4 C -0.05 -1.00 11.84 83.30 0.99 -0.01 16 5 C -0.03 -0.50 6.57 40.73 0.27 -0.23 16 6 N -0.45 -8.72 3.13 -500.14 -1.57 -10.29 16 7 C 0.12 2.20 5.32 86.48 0.46 2.66 16 8 C -0.11 -1.54 2.52 -11.41 -0.03 -1.56 16 9 H 0.13 1.38 8.11 -2.39 -0.02 1.36 16 10 C 0.52 11.86 7.15 87.66 0.63 12.49 16 11 O -0.58 -19.02 15.56 -3.04 -0.05 -19.07 16 12 N -0.69 -14.95 3.45 -435.00 -1.50 -16.45 16 13 C 0.15 4.85 3.06 46.59 0.14 4.99 16 14 H 0.05 2.06 7.70 -2.39 -0.02 2.04 16 15 C -0.13 -4.18 6.23 32.35 0.20 -3.98 16 16 C 0.14 5.76 4.72 46.37 0.22 5.98 16 17 H 0.12 5.94 5.52 -2.39 -0.01 5.92 16 18 C -0.13 -4.19 6.44 32.21 0.21 -3.99 16 19 C -0.11 -3.58 6.33 32.21 0.20 -3.38 16 20 C 0.12 4.62 5.34 46.21 0.25 4.86 16 21 H 0.06 2.72 8.14 -2.39 -0.02 2.70 16 22 N -0.62 -30.15 2.98 -614.69 -1.83 -31.99 16 23 C -0.22 -12.34 10.59 84.03 0.89 -11.45 16 24 H 0.07 3.83 7.83 -2.91 -0.02 3.81 16 25 C -0.06 -3.48 5.50 84.86 0.47 -3.02 16 26 N -0.94 -53.69 10.46 21.65 0.23 -53.46 16 27 Si 0.97 45.57 29.55 68.60 2.03 47.59 16 28 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 29 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 30 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 31 C -0.11 -1.27 5.23 30.81 0.16 -1.11 16 32 C -0.04 -0.34 6.31 30.03 0.19 -0.15 16 33 H 0.09 1.12 8.14 -2.38 -0.02 1.10 16 34 H 0.08 1.07 7.95 -2.39 -0.02 1.05 16 35 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.18 2.88 8.06 -2.91 -0.02 2.85 16 37 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.08 1.73 7.80 -2.39 -0.02 1.71 16 39 H 0.42 5.82 7.35 -92.71 -0.68 5.14 16 40 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.10 2.40 7.35 -2.39 -0.02 2.39 16 42 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.09 2.22 7.83 -2.39 -0.02 2.20 16 44 H 0.09 2.10 6.48 -2.38 -0.02 2.08 16 45 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 46 H 0.25 13.78 8.31 -92.70 -0.77 13.01 16 47 H 0.11 0.76 7.31 -2.38 -0.02 0.74 16 48 H 0.06 0.93 8.12 -2.39 -0.02 0.91 16 49 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 50 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 Total: -1.00 -74.79 388.07 2.52 -72.28 By element: Atomic # 1 Polarization: 19.65 SS G_CDS: 0.27 Total: 19.92 kcal Atomic # 6 Polarization: 0.00 SS G_CDS: 7.07 Total: 7.06 kcal Atomic # 7 Polarization: -120.98 SS G_CDS: -6.80 Total: -127.78 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: -0.05 Total: -19.07 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.59 kcal Total: -74.79 2.52 -72.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095928295.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.070 kcal (2) G-P(sol) polarization free energy of solvation -74.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds