Wall clock time and date at job start Wed Apr 1 2020 03:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.50703 * 109.46587 * 2 1 4 4 N 1.32147 * 120.53802 * 269.71380 * 3 2 1 5 5 C 1.31865 * 120.96590 * 180.27624 * 4 3 2 6 6 N 1.31872 * 122.09944 * 0.02562 * 5 4 3 7 7 C 1.32146 * 120.96128 * 359.97438 * 6 5 4 8 8 C 1.50703 * 120.53170 * 179.97438 * 7 6 5 9 9 C 1.52995 * 109.46945 * 270.01929 * 8 7 6 10 10 C 1.39943 * 120.53786 * 90.00337 * 3 2 1 11 11 C 1.47837 * 120.94063 * 359.69555 * 10 3 2 12 12 O 1.21554 * 119.99809 * 90.00105 * 11 10 3 13 13 N 1.34774 * 120.00103 * 270.00149 * 11 10 3 14 14 C 1.46502 * 120.00005 * 179.97438 * 13 11 10 15 15 H 1.09000 * 110.55725 * 9.40809 * 14 13 11 16 16 C 1.54850 * 110.62402 * 132.30341 * 14 13 11 17 17 C 1.56218 * 103.27324 * 118.45501 * 16 14 13 18 18 H 1.08994 * 115.50573 * 158.87619 * 17 16 14 19 19 C 1.55848 * 105.82274 * 288.08712 * 17 16 14 20 20 C 1.55869 * 102.97096 * 71.13944 * 19 17 16 21 21 C 1.55839 * 103.53425 * 0.87957 * 20 19 17 22 22 H 1.08995 * 116.13044 * 158.54505 * 21 20 19 23 23 N 1.50235 * 101.04959 * 32.33321 * 21 20 19 24 24 C 1.36938 * 130.83905 * 126.01529 * 23 21 20 25 25 H 1.08002 * 120.00162 * 0.02562 * 24 23 21 26 26 C 1.38816 * 119.99999 * 180.02562 * 24 23 21 27 27 N 1.31618 * 120.00168 * 359.97438 * 26 24 23 28 28 Si 1.86797 * 119.99597 * 179.97438 * 26 24 23 29 29 H 1.48496 * 109.47590 * 359.97438 * 28 26 24 30 30 H 1.48505 * 109.47046 * 120.00168 * 28 26 24 31 31 H 1.48497 * 109.47384 * 239.99494 * 28 26 24 32 32 H 1.09001 * 109.47194 * 179.97438 * 1 2 3 33 33 H 1.08993 * 109.47273 * 300.00015 * 1 2 3 34 34 H 1.09002 * 109.46785 * 60.00292 * 1 2 3 35 35 H 1.08996 * 109.46767 * 239.99888 * 2 1 3 36 36 H 1.09002 * 109.46785 * 119.99708 * 2 1 3 37 37 H 1.08000 * 118.95219 * 180.02562 * 5 4 3 38 38 H 1.08997 * 109.47053 * 30.02337 * 8 7 6 39 39 H 1.09009 * 109.46763 * 150.01937 * 8 7 6 40 40 H 1.09001 * 109.47315 * 60.00775 * 9 8 7 41 41 H 1.09003 * 109.46770 * 180.02562 * 9 8 7 42 42 H 1.08997 * 109.47578 * 300.00087 * 9 8 7 43 43 H 0.97002 * 119.99773 * 0.02562 * 13 11 10 44 44 H 1.09004 * 110.62809 * 236.98254 * 16 14 13 45 45 H 1.08997 * 110.62772 * 0.02562 * 16 14 13 46 46 H 1.09000 * 110.62301 * 190.50785 * 19 17 16 47 47 H 1.08993 * 110.62178 * 313.52203 * 19 17 16 48 48 H 1.09002 * 111.10230 * 242.11284 * 20 19 17 49 49 H 1.08997 * 110.06993 * 119.15526 * 20 19 17 50 50 H 0.96994 * 119.99991 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2614 2.0521 -1.1382 5 6 2.7060 3.2935 -1.1480 6 7 2.9429 3.9618 -0.0361 7 6 2.7412 3.4075 1.1464 8 6 3.0157 4.1800 2.4109 9 6 4.4663 3.9544 2.8416 10 6 2.2693 2.0913 1.2053 11 6 2.0278 1.4280 2.5043 12 8 2.9195 0.7999 3.0410 13 7 0.8191 1.5196 3.0933 14 6 0.5796 0.8617 4.3802 15 1 1.5140 0.4879 4.7987 16 6 -0.1109 1.8329 5.3690 17 6 -1.4723 1.1289 5.6715 18 1 -1.9640 1.4350 6.5948 19 6 -2.3243 1.2765 4.3749 20 6 -1.6141 0.3115 3.3780 21 6 -0.4528 -0.2949 4.2219 22 1 -0.0467 -1.2427 3.8686 23 7 -1.0725 -0.3171 5.5904 24 6 -1.2260 -1.3403 6.4874 25 1 -0.8670 -2.3295 6.2448 26 6 -1.8432 -1.1060 7.7085 27 7 -2.2804 0.0997 8.0044 28 14 -2.0533 -2.5020 8.9318 29 1 -1.4817 -3.7489 8.3630 30 1 -1.3478 -2.1643 10.1942 31 1 -3.4979 -2.7026 9.2108 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8899 34 1 -0.3633 0.5138 -0.8900 35 1 1.8934 -0.5138 -0.8900 36 1 1.8934 -0.5138 0.8900 37 1 2.8818 3.7783 -2.0969 38 1 2.8511 5.2423 2.2306 39 1 2.3451 3.8370 3.1989 40 1 5.1368 4.2973 2.0537 41 1 4.6647 4.5128 3.7565 42 1 4.6308 2.8921 3.0219 43 1 0.1074 2.0204 2.6647 44 1 0.4796 1.9385 6.2791 45 1 -0.2756 2.8038 4.9018 46 1 -3.3563 0.9767 4.5575 47 1 -2.2809 2.2995 4.0014 48 1 -1.2212 0.8547 2.5185 49 1 -2.3040 -0.4691 3.0573 50 1 -2.7120 0.2633 8.8575 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001096030065.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:37:10 Heat of formation + Delta-G solvation = 47.714760 kcal Electronic energy + Delta-G solvation = -31841.975428 eV Core-core repulsion = 27870.227856 eV Total energy + Delta-G solvation = -3971.747572 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.63015 -39.91127 -38.35717 -35.93756 -34.47379 -33.95622 -32.37424 -31.77397 -30.82319 -29.37347 -29.05315 -27.71678 -25.56727 -25.51590 -24.18703 -23.31868 -21.65993 -21.04369 -20.88939 -19.69967 -18.65515 -18.23566 -17.77927 -17.01705 -16.69874 -15.91769 -15.25020 -14.93020 -14.78158 -14.56221 -14.39450 -14.17706 -14.06530 -13.91851 -13.75147 -13.61655 -13.03610 -12.51310 -12.43824 -12.27324 -11.96144 -11.84023 -11.80788 -11.75013 -11.58962 -11.30926 -11.22739 -11.10312 -10.99305 -10.93372 -10.89344 -10.57079 -10.33656 -10.15524 -10.00223 -9.89446 -9.62520 -9.49398 -9.36001 -9.29044 -9.00252 -8.65361 -6.98275 -5.78129 -3.16835 0.45558 0.76076 2.52444 3.18916 3.36122 3.41434 3.42877 3.44090 3.72030 3.72655 3.99423 4.39287 4.58033 4.67852 4.85305 4.92947 5.02618 5.06191 5.08742 5.11199 5.26694 5.31088 5.36111 5.50681 5.53218 5.68654 5.70451 5.74236 5.75441 5.76934 5.82301 5.86709 5.91318 6.01120 6.04211 6.07999 6.12673 6.22006 6.26371 6.45806 6.47706 6.58727 6.69093 6.71488 6.85518 6.90264 7.20339 7.45834 7.59051 7.73690 7.79418 8.10786 8.24717 9.04381 9.67335 10.46184 11.31098 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.017329 B = 0.003196 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.385907 B = 8759.771568 C = 9379.568204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.084 4.084 3 C 0.217 3.783 4 N -0.522 5.522 5 C 0.307 3.693 6 N -0.522 5.522 7 C 0.216 3.784 8 C -0.082 4.082 9 C -0.145 4.145 10 C -0.227 4.227 11 C 0.570 3.430 12 O -0.528 6.528 13 N -0.701 5.701 14 C 0.119 3.881 15 H 0.096 0.904 16 C -0.143 4.143 17 C 0.153 3.847 18 H 0.154 0.846 19 C -0.137 4.137 20 C -0.134 4.134 21 C 0.130 3.870 22 H 0.086 0.914 23 N -0.588 5.588 24 C -0.212 4.212 25 H 0.080 0.920 26 C -0.010 4.010 27 N -0.922 5.922 28 Si 0.916 3.084 29 H -0.280 1.280 30 H -0.290 1.290 31 H -0.291 1.291 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.199 0.801 38 H 0.092 0.908 39 H 0.087 0.913 40 H 0.058 0.942 41 H 0.069 0.931 42 H 0.065 0.935 43 H 0.397 0.603 44 H 0.065 0.935 45 H 0.054 0.946 46 H 0.058 0.942 47 H 0.044 0.956 48 H 0.049 0.951 49 H 0.054 0.946 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.511 7.989 -15.904 18.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.122 4.122 3 C 0.071 3.929 4 N -0.236 5.236 5 C 0.020 3.980 6 N -0.237 5.237 7 C 0.069 3.931 8 C -0.120 4.120 9 C -0.203 4.203 10 C -0.235 4.235 11 C 0.353 3.647 12 O -0.405 6.405 13 N -0.352 5.352 14 C 0.014 3.986 15 H 0.114 0.886 16 C -0.183 4.183 17 C 0.047 3.953 18 H 0.170 0.830 19 C -0.176 4.176 20 C -0.173 4.173 21 C 0.020 3.980 22 H 0.104 0.896 23 N -0.308 5.308 24 C -0.340 4.340 25 H 0.098 0.902 26 C -0.206 4.206 27 N -0.570 5.570 28 Si 0.747 3.253 29 H -0.205 1.205 30 H -0.217 1.217 31 H -0.218 1.218 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.110 0.890 36 H 0.108 0.892 37 H 0.216 0.784 38 H 0.111 0.889 39 H 0.106 0.894 40 H 0.077 0.923 41 H 0.087 0.913 42 H 0.084 0.916 43 H 0.233 0.767 44 H 0.084 0.916 45 H 0.072 0.928 46 H 0.077 0.923 47 H 0.063 0.937 48 H 0.067 0.933 49 H 0.073 0.927 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 7.206 7.818 -16.064 19.264 hybrid contribution -0.525 -0.729 0.907 1.277 sum 6.681 7.088 -15.157 18.017 Atomic orbital electron populations 1.21795 0.92769 1.03323 1.02602 1.20694 0.97532 0.89250 1.04770 1.21860 0.88067 0.96356 0.86631 1.68286 1.14922 1.10826 1.29583 1.25097 0.88949 0.86965 0.96975 1.68282 1.18403 1.38540 0.98425 1.21849 0.87456 0.89354 0.94433 1.20667 0.99405 1.00458 0.91508 1.21703 0.93817 1.03246 1.01565 1.21598 1.08004 0.97408 0.96472 1.17737 0.83293 0.80176 0.83472 1.90817 1.43646 1.41773 1.64214 1.46371 1.12105 1.53371 1.23324 1.22864 1.00266 0.94207 0.81286 0.88557 1.23388 1.00599 0.96458 0.97834 1.23822 0.90716 0.83165 0.97646 0.82962 1.23207 1.00009 0.96402 0.97991 1.23189 0.98467 0.98897 0.96791 1.23143 0.91938 0.94887 0.88007 0.89580 1.46473 1.65533 1.06159 1.12658 1.19091 1.31809 0.88614 0.94463 0.90221 1.24700 1.01167 0.96957 0.97767 1.69445 1.45085 1.19249 1.23182 0.85966 0.77380 0.80897 0.81057 1.20525 1.21740 1.21799 0.90959 0.91846 0.92161 0.88955 0.89175 0.78421 0.88941 0.89448 0.92280 0.91250 0.91567 0.76723 0.91591 0.92773 0.92300 0.93742 0.93251 0.92690 0.93563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.90 37.16 0.37 -1.09 16 2 C -0.08 -0.92 5.91 -27.88 -0.16 -1.09 16 3 C 0.22 2.67 6.12 -81.82 -0.50 2.17 16 4 N -0.52 -6.12 10.36 -10.48 -0.11 -6.23 16 5 C 0.31 3.20 12.27 -92.03 -1.13 2.08 16 6 N -0.52 -6.09 10.36 -10.48 -0.11 -6.20 16 7 C 0.22 2.64 6.12 -81.82 -0.50 2.13 16 8 C -0.08 -0.88 5.91 -27.88 -0.16 -1.05 16 9 C -0.15 -1.54 9.89 37.15 0.37 -1.17 16 10 C -0.23 -2.96 5.66 -104.69 -0.59 -3.55 16 11 C 0.57 8.35 4.52 -12.33 -0.06 8.30 16 12 O -0.53 -9.61 16.42 5.32 0.09 -9.53 16 13 N -0.70 -9.73 4.01 -52.34 -0.21 -9.93 16 14 C 0.12 2.07 3.44 -65.43 -0.22 1.84 16 15 H 0.10 1.91 7.04 -51.93 -0.37 1.54 16 16 C -0.14 -2.59 6.27 -24.03 -0.15 -2.74 16 17 C 0.15 3.27 4.67 -62.59 -0.29 2.98 16 18 H 0.15 3.78 5.52 -51.93 -0.29 3.50 16 19 C -0.14 -2.46 6.54 -23.68 -0.15 -2.61 16 20 C -0.13 -2.19 6.28 -23.68 -0.15 -2.34 16 21 C 0.13 2.45 5.35 -62.80 -0.34 2.11 16 22 H 0.09 1.64 8.14 -51.93 -0.42 1.21 16 23 N -0.59 -13.80 2.98 -145.60 -0.43 -14.23 16 24 C -0.21 -5.59 10.59 -15.06 -0.16 -5.75 16 25 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 26 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 27 N -0.92 -25.38 10.47 55.49 0.58 -24.80 16 28 Si 0.92 21.45 29.55 -169.99 -5.02 16.43 16 29 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 30 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 31 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.67 5.82 -51.93 -0.30 0.37 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.09 1.10 7.19 -51.93 -0.37 0.73 16 37 H 0.20 1.31 8.06 -52.49 -0.42 0.89 16 38 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.09 0.98 7.18 -51.92 -0.37 0.60 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.07 0.84 8.07 -51.93 -0.42 0.42 16 43 H 0.40 4.87 7.01 -40.82 -0.29 4.58 16 44 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 45 H 0.05 0.84 7.70 -51.93 -0.40 0.44 16 46 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 47 H 0.04 0.68 7.86 -51.93 -0.41 0.27 16 48 H 0.05 0.67 3.87 -51.93 -0.20 0.46 16 49 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 50 H 0.25 6.82 8.31 -40.82 -0.34 6.48 16 LS Contribution 393.27 15.07 5.93 5.93 Total: -1.00 -29.93 393.27 -10.84 -40.77 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: -7.61 Total: 7.96 kcal Atomic # 6 Polarization: 3.77 SS G_CDS: -3.94 Total: -0.16 kcal Atomic # 7 Polarization: -61.12 SS G_CDS: -0.28 Total: -61.40 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: 0.09 Total: -9.53 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -29.93 -10.84 -40.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096030065.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.482 kcal (2) G-P(sol) polarization free energy of solvation -29.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds