Wall clock time and date at job start Wed Apr 1 2020 03:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.50703 * 109.46587 * 2 1 4 4 N 1.32147 * 120.53802 * 269.71380 * 3 2 1 5 5 C 1.31865 * 120.96590 * 180.27624 * 4 3 2 6 6 N 1.31872 * 122.09944 * 0.02562 * 5 4 3 7 7 C 1.32146 * 120.96128 * 359.97438 * 6 5 4 8 8 C 1.50703 * 120.53170 * 179.97438 * 7 6 5 9 9 C 1.52995 * 109.46945 * 270.01929 * 8 7 6 10 10 C 1.39943 * 120.53786 * 90.00337 * 3 2 1 11 11 C 1.47837 * 120.94063 * 359.69555 * 10 3 2 12 12 O 1.21554 * 119.99809 * 90.00105 * 11 10 3 13 13 N 1.34774 * 120.00103 * 270.00149 * 11 10 3 14 14 C 1.46502 * 120.00005 * 179.97438 * 13 11 10 15 15 H 1.09000 * 110.55725 * 9.40809 * 14 13 11 16 16 C 1.54850 * 110.62402 * 132.30341 * 14 13 11 17 17 C 1.56218 * 103.27324 * 118.45501 * 16 14 13 18 18 H 1.08994 * 115.50573 * 158.87619 * 17 16 14 19 19 C 1.55848 * 105.82274 * 288.08712 * 17 16 14 20 20 C 1.55869 * 102.97096 * 71.13944 * 19 17 16 21 21 C 1.55839 * 103.53425 * 0.87957 * 20 19 17 22 22 H 1.08995 * 116.13044 * 158.54505 * 21 20 19 23 23 N 1.50235 * 101.04959 * 32.33321 * 21 20 19 24 24 C 1.36938 * 130.83905 * 126.01529 * 23 21 20 25 25 H 1.08002 * 120.00162 * 0.02562 * 24 23 21 26 26 C 1.38816 * 119.99999 * 180.02562 * 24 23 21 27 27 N 1.31618 * 120.00168 * 359.97438 * 26 24 23 28 28 Si 1.86797 * 119.99597 * 179.97438 * 26 24 23 29 29 H 1.48496 * 109.47590 * 359.97438 * 28 26 24 30 30 H 1.48505 * 109.47046 * 120.00168 * 28 26 24 31 31 H 1.48497 * 109.47384 * 239.99494 * 28 26 24 32 32 H 1.09001 * 109.47194 * 179.97438 * 1 2 3 33 33 H 1.08993 * 109.47273 * 300.00015 * 1 2 3 34 34 H 1.09002 * 109.46785 * 60.00292 * 1 2 3 35 35 H 1.08996 * 109.46767 * 239.99888 * 2 1 3 36 36 H 1.09002 * 109.46785 * 119.99708 * 2 1 3 37 37 H 1.08000 * 118.95219 * 180.02562 * 5 4 3 38 38 H 1.08997 * 109.47053 * 30.02337 * 8 7 6 39 39 H 1.09009 * 109.46763 * 150.01937 * 8 7 6 40 40 H 1.09001 * 109.47315 * 60.00775 * 9 8 7 41 41 H 1.09003 * 109.46770 * 180.02562 * 9 8 7 42 42 H 1.08997 * 109.47578 * 300.00087 * 9 8 7 43 43 H 0.97002 * 119.99773 * 0.02562 * 13 11 10 44 44 H 1.09004 * 110.62809 * 236.98254 * 16 14 13 45 45 H 1.08997 * 110.62772 * 0.02562 * 16 14 13 46 46 H 1.09000 * 110.62301 * 190.50785 * 19 17 16 47 47 H 1.08993 * 110.62178 * 313.52203 * 19 17 16 48 48 H 1.09002 * 111.10230 * 242.11284 * 20 19 17 49 49 H 1.08997 * 110.06993 * 119.15526 * 20 19 17 50 50 H 0.96994 * 119.99991 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2614 2.0521 -1.1382 5 6 2.7060 3.2935 -1.1480 6 7 2.9429 3.9618 -0.0361 7 6 2.7412 3.4075 1.1464 8 6 3.0157 4.1800 2.4109 9 6 4.4663 3.9544 2.8416 10 6 2.2693 2.0913 1.2053 11 6 2.0278 1.4280 2.5043 12 8 2.9195 0.7999 3.0410 13 7 0.8191 1.5196 3.0933 14 6 0.5796 0.8617 4.3802 15 1 1.5140 0.4879 4.7987 16 6 -0.1109 1.8329 5.3690 17 6 -1.4723 1.1289 5.6715 18 1 -1.9640 1.4350 6.5948 19 6 -2.3243 1.2765 4.3749 20 6 -1.6141 0.3115 3.3780 21 6 -0.4528 -0.2949 4.2219 22 1 -0.0467 -1.2427 3.8686 23 7 -1.0725 -0.3171 5.5904 24 6 -1.2260 -1.3403 6.4874 25 1 -0.8670 -2.3295 6.2448 26 6 -1.8432 -1.1060 7.7085 27 7 -2.2804 0.0997 8.0044 28 14 -2.0533 -2.5020 8.9318 29 1 -1.4817 -3.7489 8.3630 30 1 -1.3478 -2.1643 10.1942 31 1 -3.4979 -2.7026 9.2108 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8899 34 1 -0.3633 0.5138 -0.8900 35 1 1.8934 -0.5138 -0.8900 36 1 1.8934 -0.5138 0.8900 37 1 2.8818 3.7783 -2.0969 38 1 2.8511 5.2423 2.2306 39 1 2.3451 3.8370 3.1989 40 1 5.1368 4.2973 2.0537 41 1 4.6647 4.5128 3.7565 42 1 4.6308 2.8921 3.0219 43 1 0.1074 2.0204 2.6647 44 1 0.4796 1.9385 6.2791 45 1 -0.2756 2.8038 4.9018 46 1 -3.3563 0.9767 4.5575 47 1 -2.2809 2.2995 4.0014 48 1 -1.2212 0.8547 2.5185 49 1 -2.3040 -0.4691 3.0573 50 1 -2.7120 0.2633 8.8575 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001096030065.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:37:09 Heat of formation + Delta-G solvation = 31.403286 kcal Electronic energy + Delta-G solvation = -31842.682747 eV Core-core repulsion = 27870.227856 eV Total energy + Delta-G solvation = -3972.454891 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.58363 -41.27892 -39.72417 -36.80281 -35.58823 -35.24354 -34.15196 -32.62511 -31.78150 -30.98196 -30.65941 -29.21194 -26.64231 -26.41144 -25.89112 -24.18263 -23.03594 -22.18477 -21.87456 -21.39671 -20.14018 -19.16656 -19.07178 -18.70636 -17.51221 -17.20812 -16.81240 -16.21840 -16.15206 -15.86809 -15.50927 -15.33507 -15.24615 -14.87883 -14.85744 -14.59275 -14.10072 -13.90600 -13.86465 -13.47510 -13.31516 -13.21869 -12.88698 -12.83389 -12.80235 -12.70608 -12.62279 -12.53911 -12.47694 -12.09399 -12.06841 -11.96148 -11.82102 -11.62567 -11.43467 -11.21130 -11.03865 -10.94567 -10.74663 -10.57779 -10.39070 -10.07548 -8.85235 -7.77836 -5.17208 -0.44331 -0.14597 1.34695 1.47545 1.48667 1.57466 1.99505 2.50483 2.53003 2.85233 2.93046 3.12799 3.35809 3.44612 3.56515 3.77364 3.96644 3.99926 4.10623 4.11049 4.16732 4.19951 4.22656 4.26511 4.36982 4.42333 4.49029 4.55566 4.59911 4.70089 4.71939 4.80019 4.89681 4.93677 4.96311 4.97962 4.98449 5.06456 5.15922 5.16648 5.17480 5.26312 5.33742 5.34911 5.47249 5.54314 5.73236 5.81022 5.89771 6.28467 6.42092 6.92834 7.04874 7.08869 7.71203 8.56014 9.28799 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.017329 B = 0.003196 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.385907 B = 8759.771568 C = 9379.568204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.084 4.084 3 C 0.217 3.783 4 N -0.529 5.529 5 C 0.312 3.688 6 N -0.528 5.528 7 C 0.215 3.785 8 C -0.083 4.083 9 C -0.141 4.141 10 C -0.244 4.244 11 C 0.582 3.418 12 O -0.566 6.566 13 N -0.686 5.686 14 C 0.140 3.860 15 H 0.069 0.931 16 C -0.129 4.129 17 C 0.138 3.862 18 H 0.117 0.883 19 C -0.127 4.127 20 C -0.117 4.117 21 C 0.124 3.876 22 H 0.081 0.919 23 N -0.616 5.616 24 C -0.220 4.220 25 H 0.076 0.924 26 C -0.063 4.063 27 N -0.944 5.944 28 Si 0.972 3.028 29 H -0.272 1.272 30 H -0.295 1.295 31 H -0.293 1.293 32 H 0.080 0.920 33 H 0.055 0.945 34 H 0.068 0.932 35 H 0.104 0.896 36 H 0.073 0.927 37 H 0.236 0.764 38 H 0.111 0.889 39 H 0.081 0.919 40 H 0.064 0.936 41 H 0.083 0.917 42 H 0.038 0.962 43 H 0.410 0.590 44 H 0.043 0.957 45 H 0.088 0.912 46 H 0.039 0.961 47 H 0.080 0.920 48 H 0.086 0.914 49 H 0.052 0.948 50 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.637 9.324 -18.670 21.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.122 4.122 3 C 0.070 3.930 4 N -0.243 5.243 5 C 0.025 3.975 6 N -0.243 5.243 7 C 0.069 3.931 8 C -0.121 4.121 9 C -0.199 4.199 10 C -0.252 4.252 11 C 0.367 3.633 12 O -0.445 6.445 13 N -0.337 5.337 14 C 0.033 3.967 15 H 0.087 0.913 16 C -0.169 4.169 17 C 0.032 3.968 18 H 0.134 0.866 19 C -0.167 4.167 20 C -0.156 4.156 21 C 0.016 3.984 22 H 0.099 0.901 23 N -0.337 5.337 24 C -0.349 4.349 25 H 0.093 0.907 26 C -0.256 4.256 27 N -0.593 5.593 28 Si 0.802 3.198 29 H -0.197 1.197 30 H -0.223 1.223 31 H -0.220 1.220 32 H 0.099 0.901 33 H 0.074 0.926 34 H 0.087 0.913 35 H 0.122 0.878 36 H 0.091 0.909 37 H 0.252 0.748 38 H 0.130 0.870 39 H 0.100 0.900 40 H 0.083 0.917 41 H 0.102 0.898 42 H 0.058 0.942 43 H 0.248 0.752 44 H 0.062 0.938 45 H 0.106 0.894 46 H 0.058 0.942 47 H 0.099 0.901 48 H 0.104 0.896 49 H 0.071 0.929 50 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 7.330 9.175 -18.888 22.241 hybrid contribution -0.482 -1.116 1.670 2.066 sum 6.847 8.059 -17.218 20.206 Atomic orbital electron populations 1.21767 0.91727 1.03912 1.02583 1.20713 0.98364 0.88631 1.04488 1.22046 0.87611 0.96756 0.86593 1.68386 1.15492 1.11436 1.28993 1.25901 0.87047 0.86517 0.98005 1.68387 1.18813 1.38611 0.98457 1.22061 0.86760 0.89083 0.95245 1.20725 0.99098 1.01426 0.90815 1.21659 0.94071 1.01641 1.02511 1.21411 1.10212 0.98060 0.95502 1.17897 0.82557 0.79187 0.83688 1.90806 1.44853 1.43434 1.65393 1.46066 1.12557 1.53059 1.22054 1.22306 0.98328 0.93632 0.82446 0.91309 1.23222 0.98415 0.97884 0.97416 1.23719 0.92586 0.82575 0.97967 0.86571 1.23095 0.98238 0.98796 0.96538 1.23070 0.96966 0.98648 0.96951 1.23312 0.93028 0.95497 0.86545 0.90054 1.46719 1.66473 1.06539 1.14012 1.19343 1.30878 0.89421 0.95236 0.90653 1.25379 1.01935 0.98902 0.99374 1.69681 1.46082 1.20493 1.23091 0.85087 0.76830 0.79009 0.78881 1.19658 1.22268 1.22044 0.90137 0.92572 0.91279 0.87804 0.90884 0.74771 0.87023 0.90004 0.91742 0.89791 0.94248 0.75153 0.93829 0.89357 0.94244 0.90142 0.89634 0.92930 0.94288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 9.90 71.99 0.71 -1.72 16 2 C -0.08 -1.68 5.91 29.85 0.18 -1.51 16 3 C 0.22 4.86 6.12 42.93 0.26 5.13 16 4 N -0.53 -10.88 10.36 -187.06 -1.94 -12.82 16 5 C 0.31 5.45 12.27 180.84 2.22 7.67 16 6 N -0.53 -10.78 10.36 -187.06 -1.94 -12.72 16 7 C 0.22 4.79 6.12 42.93 0.26 5.05 16 8 C -0.08 -1.61 5.91 29.85 0.18 -1.44 16 9 C -0.14 -2.82 9.89 71.98 0.71 -2.10 16 10 C -0.24 -5.95 5.66 -19.91 -0.11 -6.06 16 11 C 0.58 16.52 4.52 86.78 0.39 16.91 16 12 O -0.57 -20.80 16.42 -3.89 -0.06 -20.86 16 13 N -0.69 -17.88 4.01 -437.78 -1.76 -19.64 16 14 C 0.14 4.77 3.44 46.61 0.16 4.93 16 15 H 0.07 2.79 7.04 -2.39 -0.02 2.78 16 16 C -0.13 -4.63 6.27 32.34 0.20 -4.42 16 17 C 0.14 5.92 4.67 46.36 0.22 6.13 16 18 H 0.12 5.97 5.52 -2.39 -0.01 5.96 16 19 C -0.13 -4.38 6.54 32.57 0.21 -4.17 16 20 C -0.12 -3.59 6.28 32.57 0.20 -3.39 16 21 C 0.12 4.65 5.35 46.23 0.25 4.90 16 22 H 0.08 3.10 8.14 -2.39 -0.02 3.08 16 23 N -0.62 -29.44 2.98 -614.55 -1.83 -31.27 16 24 C -0.22 -11.91 10.59 84.03 0.89 -11.02 16 25 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16 26 C -0.06 -3.47 5.50 84.86 0.47 -3.00 16 27 N -0.94 -53.80 10.47 21.65 0.23 -53.57 16 28 Si 0.97 45.21 29.55 68.60 2.03 47.23 16 29 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 30 H -0.30 -13.84 7.11 99.48 0.71 -13.14 16 31 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 32 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.06 1.02 5.82 -2.39 -0.01 1.00 16 34 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.07 1.73 7.19 -2.39 -0.02 1.71 16 37 H 0.24 2.10 8.06 -2.91 -0.02 2.08 16 38 H 0.11 1.74 8.14 -2.39 -0.02 1.73 16 39 H 0.08 1.68 7.18 -2.38 -0.02 1.66 16 40 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.04 1.00 8.07 -2.39 -0.02 0.98 16 43 H 0.41 8.73 7.01 -92.71 -0.65 8.08 16 44 H 0.04 1.74 8.14 -2.38 -0.02 1.72 16 45 H 0.09 2.52 7.70 -2.39 -0.02 2.50 16 46 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 47 H 0.08 2.18 7.86 -2.39 -0.02 2.16 16 48 H 0.09 2.00 3.87 -2.39 -0.01 1.99 16 49 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 50 H 0.25 13.79 8.31 -92.71 -0.77 13.02 16 Total: -1.00 -67.42 393.27 2.45 -64.98 By element: Atomic # 1 Polarization: 26.45 SS G_CDS: 0.32 Total: 26.77 kcal Atomic # 6 Polarization: 4.49 SS G_CDS: 7.40 Total: 11.89 kcal Atomic # 7 Polarization: -122.77 SS G_CDS: -7.24 Total: -130.01 kcal Atomic # 8 Polarization: -20.80 SS G_CDS: -0.06 Total: -20.86 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.23 kcal Total: -67.42 2.45 -64.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096030065.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.381 kcal (2) G-P(sol) polarization free energy of solvation -67.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds