Wall clock time and date at job start Wed Apr 1 2020 03:25:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30758 * 125.61639 * 2 1 4 4 C 1.33572 * 109.14349 * 180.02562 * 3 2 1 5 5 C 1.35020 * 107.98512 * 0.04973 * 4 3 2 6 6 N 1.35314 * 125.61555 * 180.02562 * 2 1 3 7 7 H 0.96996 * 126.49441 * 359.93840 * 6 2 1 8 8 C 1.50651 * 124.45843 * 179.84247 * 5 4 3 9 9 C 1.53402 * 108.38382 * 343.59538 * 8 5 4 10 10 H 1.08993 * 109.47647 * 289.64731 * 9 8 5 11 11 C 1.50695 * 109.47467 * 169.63420 * 9 8 5 12 12 O 1.21283 * 119.99814 * 240.02300 * 11 9 8 13 13 N 1.34773 * 120.00164 * 60.02536 * 11 9 8 14 14 C 1.46503 * 119.99837 * 179.97438 * 13 11 9 15 15 H 1.08997 * 110.56132 * 32.09603 * 14 13 11 16 16 C 1.55877 * 110.20366 * 268.88338 * 14 13 11 17 17 C 1.55846 * 102.97150 * 240.78306 * 16 14 13 18 18 H 1.09002 * 115.56047 * 159.69072 * 17 16 14 19 19 C 1.55848 * 105.74102 * 288.86911 * 17 16 14 20 20 C 1.54853 * 103.44532 * 72.01260 * 19 17 16 21 21 C 1.55847 * 103.44638 * 359.97438 * 20 19 17 22 22 H 1.08997 * 115.56393 * 158.81308 * 21 20 19 23 23 N 1.50240 * 101.04996 * 33.81862 * 17 16 14 24 24 C 1.36936 * 130.84094 * 125.33662 * 23 17 16 25 25 H 1.07994 * 120.00055 * 179.97438 * 24 23 17 26 26 C 1.38810 * 119.99700 * 359.97438 * 24 23 17 27 27 N 1.31624 * 120.00368 * 0.02562 * 26 24 23 28 28 Si 1.86804 * 120.00009 * 180.02562 * 26 24 23 29 29 H 1.48498 * 109.46852 * 59.99864 * 28 26 24 30 30 H 1.48501 * 109.47078 * 180.02562 * 28 26 24 31 31 H 1.48506 * 109.46941 * 299.99873 * 28 26 24 32 32 C 1.53125 * 109.44299 * 49.63978 * 9 8 5 33 33 C 1.50875 * 128.02795 * 180.02562 * 4 3 2 34 34 H 1.08997 * 109.47550 * 269.98135 * 1 2 3 35 35 H 1.09005 * 109.46757 * 29.98551 * 1 2 3 36 36 H 1.09003 * 109.47126 * 149.97493 * 1 2 3 37 37 H 1.09000 * 109.68796 * 223.86886 * 8 5 4 38 38 H 1.09001 * 109.67939 * 103.31450 * 8 5 4 39 39 H 0.96993 * 119.99842 * 0.02562 * 13 11 9 40 40 H 1.09006 * 110.09627 * 122.80322 * 16 14 13 41 41 H 1.09001 * 111.60505 * 359.47405 * 16 14 13 42 42 H 1.09000 * 110.62572 * 190.49964 * 19 17 16 43 43 H 1.09000 * 110.62759 * 313.51846 * 19 17 16 44 44 H 1.08997 * 110.62526 * 241.50943 * 20 19 17 45 45 H 1.09000 * 110.76127 * 118.55016 * 20 19 17 46 46 H 0.96994 * 120.00344 * 180.02562 * 27 26 24 47 47 H 1.08995 * 109.45840 * 50.00824 * 32 9 8 48 48 H 1.08999 * 109.45672 * 169.98099 * 32 9 8 49 49 H 1.08999 * 109.67465 * 43.59806 * 33 4 3 50 50 H 1.08995 * 109.70575 * 283.07367 * 33 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2685 1.0630 0.0000 4 6 3.5494 0.6842 -0.0006 5 6 3.5850 -0.6655 -0.0020 6 7 2.2950 -1.1000 -0.0005 7 1 1.9970 -2.0231 -0.0001 8 6 4.8492 -1.4848 -0.0065 9 6 6.0135 -0.5756 -0.4200 10 1 5.9197 -0.3226 -1.4760 11 6 7.3182 -1.2937 -0.1894 12 8 8.1414 -0.8270 0.5691 13 7 7.5702 -2.4545 -0.8262 14 6 8.8387 -3.1523 -0.6024 15 1 9.1925 -2.9866 0.4152 16 6 9.8990 -2.6901 -1.6473 17 6 10.2484 -4.0102 -2.3985 18 1 10.7010 -3.8858 -3.3823 19 6 11.0649 -4.8692 -1.3864 20 6 9.9998 -5.3231 -0.3580 21 6 8.6850 -4.6760 -0.8884 22 1 7.7605 -5.1383 -0.5426 23 7 8.9225 -4.7163 -2.3717 24 6 8.1643 -5.2365 -3.3865 25 1 7.2222 -5.7159 -3.1654 26 6 8.6067 -5.1475 -4.6992 27 7 9.7552 -4.5636 -4.9685 28 14 7.5721 -5.8564 -6.0836 29 1 6.2476 -5.1855 -6.1051 30 1 8.2612 -5.6344 -7.3801 31 1 7.3855 -7.3135 -5.8658 32 6 5.9814 0.7062 0.4169 33 6 4.7777 1.5603 -0.0003 34 1 -0.3634 -0.0003 1.0276 35 1 -0.3633 0.8902 -0.5136 36 1 -0.3633 -0.8898 -0.5142 37 1 4.7530 -2.3047 -0.7183 38 1 5.0316 -1.8838 0.9913 39 1 6.9119 -2.8276 -1.4331 40 1 10.7779 -2.2936 -1.1389 41 1 9.4879 -1.9530 -2.3371 42 1 11.5091 -5.7308 -1.8848 43 1 11.8331 -4.2658 -0.9028 44 1 10.2398 -4.9448 0.6356 45 1 9.9148 -6.4097 -0.3439 46 1 10.0642 -4.5011 -5.8858 47 1 5.8962 0.4486 1.4726 48 1 6.9001 1.2696 0.2536 49 1 4.6450 2.3781 0.7081 50 1 4.9419 1.9634 -0.9995 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001097374632.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:25:36 Heat of formation + Delta-G solvation = 46.673633 kcal Electronic energy + Delta-G solvation = -30823.175063 eV Core-core repulsion = 26851.382344 eV Total energy + Delta-G solvation = -3971.792719 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.47690 -39.94715 -38.65406 -36.20805 -33.86370 -33.26451 -32.55338 -31.47937 -30.15770 -29.14426 -28.81122 -28.01997 -27.18136 -24.26807 -23.42199 -22.98412 -21.23444 -20.99158 -19.90549 -19.78792 -19.05933 -18.61028 -17.63803 -17.03461 -16.65565 -15.86943 -15.66064 -15.18740 -14.84601 -14.28487 -14.09376 -13.98589 -13.88485 -13.71563 -13.59075 -13.49469 -13.06505 -12.93167 -12.69333 -12.61523 -12.09142 -11.93100 -11.82286 -11.54130 -11.24111 -11.15127 -11.09215 -10.98271 -10.95362 -10.92693 -10.55278 -10.38588 -10.16141 -10.01054 -9.94881 -9.94018 -9.65700 -9.25327 -9.15541 -9.00612 -8.45063 -8.15913 -6.98998 -5.78682 -3.18128 1.83101 2.75614 2.92463 3.03780 3.31811 3.36478 3.38713 3.58386 4.12703 4.36107 4.52663 4.64525 4.76417 4.86343 5.00703 5.06102 5.09580 5.18686 5.26353 5.29767 5.33243 5.43143 5.49806 5.53746 5.60205 5.65878 5.69625 5.81610 5.84628 5.96315 6.01589 6.05040 6.08784 6.12469 6.19608 6.25802 6.30135 6.40433 6.46498 6.57967 6.65255 6.72540 6.79798 6.92904 7.10933 7.21149 7.30622 7.41631 7.75328 7.95722 7.98813 8.13473 8.61046 9.02525 9.65976 10.47393 11.29981 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.011314 B = 0.003092 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2474.238810 B = 9053.482765 C =10584.380020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.196 3.804 3 N -0.482 5.482 4 C 0.009 3.991 5 C -0.022 4.022 6 N -0.557 5.557 7 H 0.418 0.582 8 C -0.032 4.032 9 C -0.101 4.101 10 H 0.101 0.899 11 C 0.515 3.485 12 O -0.549 6.549 13 N -0.705 5.705 14 C 0.128 3.872 15 H 0.080 0.920 16 C -0.141 4.141 17 C 0.153 3.847 18 H 0.152 0.848 19 C -0.138 4.138 20 C -0.128 4.128 21 C 0.125 3.875 22 H 0.086 0.914 23 N -0.591 5.591 24 C -0.216 4.216 25 H 0.077 0.923 26 C -0.009 4.009 27 N -0.919 5.919 28 Si 0.914 3.086 29 H -0.287 1.287 30 H -0.290 1.290 31 H -0.286 1.286 32 C -0.096 4.096 33 C -0.034 4.034 34 H 0.078 0.922 35 H 0.090 0.910 36 H 0.072 0.928 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.402 0.598 40 H 0.052 0.948 41 H 0.061 0.939 42 H 0.055 0.945 43 H 0.048 0.952 44 H 0.051 0.949 45 H 0.056 0.944 46 H 0.255 0.745 47 H 0.070 0.930 48 H 0.083 0.917 49 H 0.080 0.920 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.477 5.892 10.445 17.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.067 4.067 3 N -0.202 5.202 4 C -0.121 4.121 5 C -0.138 4.138 6 N -0.160 5.160 7 H 0.256 0.744 8 C -0.071 4.071 9 C -0.123 4.123 10 H 0.120 0.880 11 C 0.300 3.700 12 O -0.427 6.427 13 N -0.354 5.354 14 C 0.022 3.978 15 H 0.098 0.902 16 C -0.181 4.181 17 C 0.046 3.954 18 H 0.168 0.832 19 C -0.178 4.178 20 C -0.168 4.168 21 C 0.016 3.984 22 H 0.104 0.896 23 N -0.312 5.312 24 C -0.344 4.344 25 H 0.094 0.906 26 C -0.205 4.205 27 N -0.566 5.566 28 Si 0.745 3.255 29 H -0.213 1.213 30 H -0.216 1.216 31 H -0.213 1.213 32 C -0.134 4.134 33 C -0.072 4.072 34 H 0.097 0.903 35 H 0.108 0.892 36 H 0.091 0.909 37 H 0.100 0.900 38 H 0.101 0.899 39 H 0.236 0.764 40 H 0.070 0.930 41 H 0.079 0.921 42 H 0.074 0.926 43 H 0.067 0.933 44 H 0.070 0.930 45 H 0.075 0.925 46 H 0.066 0.934 47 H 0.089 0.911 48 H 0.102 0.898 49 H 0.098 0.902 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -12.215 6.984 10.639 17.640 hybrid contribution -0.787 -1.998 -1.065 2.397 sum -13.002 4.986 9.574 16.899 Atomic orbital electron populations 1.20151 0.84837 1.04012 1.03396 1.23294 0.95423 0.81394 1.06543 1.69928 1.01759 1.28571 1.19922 1.20564 0.92828 0.91192 1.07537 1.20820 0.85489 0.95608 1.11912 1.42781 1.06145 1.09975 1.57101 0.74398 1.19997 0.87982 0.96281 1.02810 1.21325 0.91909 0.96178 1.02867 0.88042 1.20362 0.88114 0.81196 0.80285 1.90662 1.48478 1.66080 1.37451 1.46062 1.20498 1.22944 1.45881 1.22852 0.83232 0.93366 0.98342 0.90179 1.23594 0.97056 1.00144 0.97329 1.23738 0.85851 0.87364 0.98429 0.83150 1.23047 0.96885 1.00236 0.97591 1.22885 0.96915 0.99738 0.97280 1.23154 0.96119 0.91945 0.87183 0.89570 1.46530 1.20145 1.65488 0.99001 1.18927 1.00454 1.30047 0.84992 0.90562 1.24693 0.97441 1.01316 0.97009 1.69451 1.20478 1.48212 1.18464 0.86165 0.79105 0.78663 0.81578 1.21348 1.21566 1.21308 1.21413 0.98119 0.94186 0.99708 1.19992 0.88589 0.96262 1.02381 0.90306 0.89163 0.90883 0.90050 0.89909 0.76384 0.92967 0.92055 0.92623 0.93313 0.93043 0.92524 0.93448 0.91111 0.89812 0.90177 0.90479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.42 10.51 36.01 0.38 -0.04 16 2 C 0.20 2.09 8.16 -154.95 -1.26 0.83 16 3 N -0.48 -6.57 11.25 -6.94 -0.08 -6.65 16 4 C 0.01 0.11 6.98 -82.89 -0.58 -0.46 16 5 C -0.02 -0.26 7.08 -81.86 -0.58 -0.84 16 6 N -0.56 -5.36 6.15 -6.53 -0.04 -5.40 16 7 H 0.42 2.68 8.96 -40.82 -0.37 2.31 16 8 C -0.03 -0.34 5.43 -27.70 -0.15 -0.49 16 9 C -0.10 -1.24 2.51 -91.50 -0.23 -1.47 16 10 H 0.10 1.23 8.12 -51.93 -0.42 0.81 16 11 C 0.52 8.02 7.13 -10.99 -0.08 7.94 16 12 O -0.55 -10.27 15.46 5.56 0.09 -10.18 16 13 N -0.70 -11.34 4.99 -50.89 -0.25 -11.59 16 14 C 0.13 2.30 2.84 -64.90 -0.18 2.12 16 15 H 0.08 1.45 7.22 -51.93 -0.38 1.08 16 16 C -0.14 -2.81 6.28 -23.68 -0.15 -2.96 16 17 C 0.15 3.39 4.67 -62.80 -0.29 3.09 16 18 H 0.15 3.86 5.52 -51.93 -0.29 3.58 16 19 C -0.14 -2.68 6.46 -24.23 -0.16 -2.83 16 20 C -0.13 -2.26 6.44 -24.23 -0.16 -2.42 16 21 C 0.12 2.33 5.06 -62.81 -0.32 2.01 16 22 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 23 N -0.59 -13.50 2.98 -145.82 -0.43 -13.93 16 24 C -0.22 -5.48 10.59 -15.06 -0.16 -5.64 16 25 H 0.08 1.85 7.83 -52.49 -0.41 1.44 16 26 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 27 N -0.92 -25.25 10.47 55.49 0.58 -24.67 16 28 Si 0.91 20.94 29.55 -169.99 -5.02 15.92 16 29 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 30 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 31 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 32 C -0.10 -1.15 4.64 -26.47 -0.12 -1.27 16 33 C -0.03 -0.39 6.30 -27.60 -0.17 -0.56 16 34 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.08 0.80 7.90 -51.93 -0.41 0.39 16 38 H 0.08 0.87 8.11 -51.93 -0.42 0.45 16 39 H 0.40 6.26 8.34 -40.82 -0.34 5.92 16 40 H 0.05 0.98 7.85 -51.93 -0.41 0.57 16 41 H 0.06 1.32 8.02 -51.93 -0.42 0.91 16 42 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.05 0.85 7.85 -51.93 -0.41 0.44 16 44 H 0.05 0.80 7.82 -51.93 -0.41 0.40 16 45 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 46 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 47 H 0.07 0.87 8.11 -51.93 -0.42 0.45 16 48 H 0.08 1.04 7.77 -51.93 -0.40 0.64 16 49 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 50 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 391.59 15.07 5.90 5.90 Total: -1.00 -31.72 391.59 -11.58 -43.30 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: -8.01 Total: 10.62 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: -4.31 Total: -3.32 kcal Atomic # 7 Polarization: -62.01 SS G_CDS: -0.23 Total: -62.24 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.09 Total: -10.18 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.72 -11.58 -43.30 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097374632.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.978 kcal (2) G-P(sol) polarization free energy of solvation -31.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds