Wall clock time and date at job start Wed Apr 1 2020 03:25:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30758 * 125.61639 * 2 1 4 4 C 1.33572 * 109.14349 * 180.02562 * 3 2 1 5 5 C 1.35020 * 107.98512 * 0.04973 * 4 3 2 6 6 N 1.35314 * 125.61555 * 180.02562 * 2 1 3 7 7 H 0.96996 * 126.49441 * 359.93840 * 6 2 1 8 8 C 1.50651 * 124.45843 * 179.84247 * 5 4 3 9 9 C 1.53402 * 108.38382 * 343.59538 * 8 5 4 10 10 H 1.08993 * 109.47647 * 289.64731 * 9 8 5 11 11 C 1.50695 * 109.47467 * 169.63420 * 9 8 5 12 12 O 1.21283 * 119.99814 * 240.02300 * 11 9 8 13 13 N 1.34773 * 120.00164 * 60.02536 * 11 9 8 14 14 C 1.46503 * 119.99837 * 179.97438 * 13 11 9 15 15 H 1.08997 * 110.56132 * 32.09603 * 14 13 11 16 16 C 1.55877 * 110.20366 * 268.88338 * 14 13 11 17 17 C 1.55846 * 102.97150 * 240.78306 * 16 14 13 18 18 H 1.09002 * 115.56047 * 159.69072 * 17 16 14 19 19 C 1.55848 * 105.74102 * 288.86911 * 17 16 14 20 20 C 1.54853 * 103.44532 * 72.01260 * 19 17 16 21 21 C 1.55847 * 103.44638 * 359.97438 * 20 19 17 22 22 H 1.08997 * 115.56393 * 158.81308 * 21 20 19 23 23 N 1.50240 * 101.04996 * 33.81862 * 17 16 14 24 24 C 1.36936 * 130.84094 * 125.33662 * 23 17 16 25 25 H 1.07994 * 120.00055 * 179.97438 * 24 23 17 26 26 C 1.38810 * 119.99700 * 359.97438 * 24 23 17 27 27 N 1.31624 * 120.00368 * 0.02562 * 26 24 23 28 28 Si 1.86804 * 120.00009 * 180.02562 * 26 24 23 29 29 H 1.48498 * 109.46852 * 59.99864 * 28 26 24 30 30 H 1.48501 * 109.47078 * 180.02562 * 28 26 24 31 31 H 1.48506 * 109.46941 * 299.99873 * 28 26 24 32 32 C 1.53125 * 109.44299 * 49.63978 * 9 8 5 33 33 C 1.50875 * 128.02795 * 180.02562 * 4 3 2 34 34 H 1.08997 * 109.47550 * 269.98135 * 1 2 3 35 35 H 1.09005 * 109.46757 * 29.98551 * 1 2 3 36 36 H 1.09003 * 109.47126 * 149.97493 * 1 2 3 37 37 H 1.09000 * 109.68796 * 223.86886 * 8 5 4 38 38 H 1.09001 * 109.67939 * 103.31450 * 8 5 4 39 39 H 0.96993 * 119.99842 * 0.02562 * 13 11 9 40 40 H 1.09006 * 110.09627 * 122.80322 * 16 14 13 41 41 H 1.09001 * 111.60505 * 359.47405 * 16 14 13 42 42 H 1.09000 * 110.62572 * 190.49964 * 19 17 16 43 43 H 1.09000 * 110.62759 * 313.51846 * 19 17 16 44 44 H 1.08997 * 110.62526 * 241.50943 * 20 19 17 45 45 H 1.09000 * 110.76127 * 118.55016 * 20 19 17 46 46 H 0.96994 * 120.00344 * 180.02562 * 27 26 24 47 47 H 1.08995 * 109.45840 * 50.00824 * 32 9 8 48 48 H 1.08999 * 109.45672 * 169.98099 * 32 9 8 49 49 H 1.08999 * 109.67465 * 43.59806 * 33 4 3 50 50 H 1.08995 * 109.70575 * 283.07367 * 33 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2685 1.0630 0.0000 4 6 3.5494 0.6842 -0.0006 5 6 3.5850 -0.6655 -0.0020 6 7 2.2950 -1.1000 -0.0005 7 1 1.9970 -2.0231 -0.0001 8 6 4.8492 -1.4848 -0.0065 9 6 6.0135 -0.5756 -0.4200 10 1 5.9197 -0.3226 -1.4760 11 6 7.3182 -1.2937 -0.1894 12 8 8.1414 -0.8270 0.5691 13 7 7.5702 -2.4545 -0.8262 14 6 8.8387 -3.1523 -0.6024 15 1 9.1925 -2.9866 0.4152 16 6 9.8990 -2.6901 -1.6473 17 6 10.2484 -4.0102 -2.3985 18 1 10.7010 -3.8858 -3.3823 19 6 11.0649 -4.8692 -1.3864 20 6 9.9998 -5.3231 -0.3580 21 6 8.6850 -4.6760 -0.8884 22 1 7.7605 -5.1383 -0.5426 23 7 8.9225 -4.7163 -2.3717 24 6 8.1643 -5.2365 -3.3865 25 1 7.2222 -5.7159 -3.1654 26 6 8.6067 -5.1475 -4.6992 27 7 9.7552 -4.5636 -4.9685 28 14 7.5721 -5.8564 -6.0836 29 1 6.2476 -5.1855 -6.1051 30 1 8.2612 -5.6344 -7.3801 31 1 7.3855 -7.3135 -5.8658 32 6 5.9814 0.7062 0.4169 33 6 4.7777 1.5603 -0.0003 34 1 -0.3634 -0.0003 1.0276 35 1 -0.3633 0.8902 -0.5136 36 1 -0.3633 -0.8898 -0.5142 37 1 4.7530 -2.3047 -0.7183 38 1 5.0316 -1.8838 0.9913 39 1 6.9119 -2.8276 -1.4331 40 1 10.7779 -2.2936 -1.1389 41 1 9.4879 -1.9530 -2.3371 42 1 11.5091 -5.7308 -1.8848 43 1 11.8331 -4.2658 -0.9028 44 1 10.2398 -4.9448 0.6356 45 1 9.9148 -6.4097 -0.3439 46 1 10.0642 -4.5011 -5.8858 47 1 5.8962 0.4486 1.4726 48 1 6.9001 1.2696 0.2536 49 1 4.6450 2.3781 0.7081 50 1 4.9419 1.9634 -0.9995 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001097374632.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:25:35 Heat of formation + Delta-G solvation = 27.946902 kcal Electronic energy + Delta-G solvation = -30823.987115 eV Core-core repulsion = 26851.382344 eV Total energy + Delta-G solvation = -3972.604771 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.31192 -41.33003 -40.08586 -37.24287 -35.28524 -34.42996 -34.09969 -32.19076 -31.14794 -30.94084 -30.29601 -29.29433 -28.23432 -26.09188 -24.43559 -23.97021 -22.56930 -21.79057 -21.48787 -21.12548 -20.32905 -19.87281 -18.81354 -18.55047 -17.78381 -17.19561 -16.75740 -16.60284 -16.21810 -15.76650 -15.54303 -15.12390 -14.85419 -14.80688 -14.70901 -14.41238 -14.35395 -13.74157 -13.72949 -13.63706 -13.47746 -13.26549 -12.89316 -12.85393 -12.77594 -12.72766 -12.61265 -12.48619 -12.09390 -12.04468 -11.96940 -11.91276 -11.87588 -11.67166 -11.17747 -10.92204 -10.91849 -10.87059 -10.81064 -10.55939 -9.88137 -9.00615 -8.84308 -7.73391 -5.13096 1.01112 1.49805 1.51261 1.57214 1.65304 2.05055 2.12651 2.35435 2.51804 3.35009 3.39914 3.47851 3.63187 3.73535 3.78921 4.03702 4.10310 4.13232 4.16095 4.19141 4.29409 4.36555 4.47758 4.50432 4.52151 4.57614 4.61596 4.66592 4.74956 4.75896 4.77609 4.85567 4.89877 4.94802 5.06487 5.11000 5.12070 5.18400 5.19860 5.21319 5.28661 5.31882 5.40708 5.54235 5.63963 5.75541 5.78848 5.92297 6.29938 6.54046 6.69351 7.07887 7.12404 7.33077 7.75310 8.61313 9.33567 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.011314 B = 0.003092 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2474.238810 B = 9053.482765 C =10584.380020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.198 3.802 3 N -0.523 5.523 4 C -0.019 4.019 5 C -0.027 4.027 6 N -0.548 5.548 7 H 0.434 0.566 8 C -0.023 4.023 9 C -0.093 4.093 10 H 0.105 0.895 11 C 0.519 3.481 12 O -0.579 6.579 13 N -0.703 5.703 14 C 0.141 3.859 15 H 0.088 0.912 16 C -0.133 4.133 17 C 0.139 3.861 18 H 0.113 0.887 19 C -0.132 4.132 20 C -0.120 4.120 21 C 0.128 3.872 22 H 0.105 0.895 23 N -0.609 5.609 24 C -0.212 4.212 25 H 0.087 0.913 26 C -0.067 4.067 27 N -0.948 5.948 28 Si 0.971 3.029 29 H -0.278 1.278 30 H -0.303 1.303 31 H -0.282 1.282 32 C -0.088 4.088 33 C -0.029 4.029 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.088 0.912 39 H 0.406 0.594 40 H 0.062 0.938 41 H 0.036 0.964 42 H 0.037 0.963 43 H 0.069 0.931 44 H 0.080 0.920 45 H 0.058 0.942 46 H 0.244 0.756 47 H 0.066 0.934 48 H 0.075 0.925 49 H 0.082 0.918 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.574 4.995 11.999 19.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.066 4.066 3 N -0.244 5.244 4 C -0.148 4.148 5 C -0.144 4.144 6 N -0.152 5.152 7 H 0.275 0.725 8 C -0.061 4.061 9 C -0.115 4.115 10 H 0.123 0.877 11 C 0.306 3.694 12 O -0.459 6.459 13 N -0.351 5.351 14 C 0.034 3.966 15 H 0.106 0.894 16 C -0.173 4.173 17 C 0.032 3.968 18 H 0.130 0.870 19 C -0.172 4.172 20 C -0.160 4.160 21 C 0.020 3.980 22 H 0.123 0.877 23 N -0.331 5.331 24 C -0.341 4.341 25 H 0.105 0.895 26 C -0.260 4.260 27 N -0.598 5.598 28 Si 0.802 3.198 29 H -0.205 1.205 30 H -0.230 1.230 31 H -0.209 1.209 32 C -0.126 4.126 33 C -0.067 4.067 34 H 0.111 0.889 35 H 0.108 0.892 36 H 0.116 0.884 37 H 0.113 0.887 38 H 0.106 0.894 39 H 0.241 0.759 40 H 0.081 0.919 41 H 0.055 0.945 42 H 0.055 0.945 43 H 0.087 0.913 44 H 0.099 0.901 45 H 0.077 0.923 46 H 0.054 0.946 47 H 0.085 0.915 48 H 0.094 0.906 49 H 0.101 0.899 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -14.343 6.061 12.226 19.798 hybrid contribution -0.150 -1.685 -1.500 2.261 sum -14.493 4.375 10.726 18.554 Atomic orbital electron populations 1.20330 0.82003 1.05207 1.04685 1.24052 0.96936 0.80999 1.04567 1.69908 1.02338 1.30328 1.21798 1.20826 0.93135 0.92147 1.08676 1.20848 0.86412 0.95250 1.11925 1.42753 1.05321 1.10769 1.56361 0.72526 1.19923 0.86840 0.95968 1.03415 1.21261 0.90823 0.96234 1.03138 0.87723 1.20814 0.88710 0.80621 0.79246 1.90650 1.49747 1.66706 1.38801 1.46010 1.19935 1.23163 1.46021 1.22628 0.83407 0.92870 0.97707 0.89450 1.23458 0.98179 0.98408 0.97270 1.23560 0.86360 0.89098 0.97765 0.87010 1.22949 0.97571 0.99292 0.97352 1.22844 0.95296 0.99894 0.97950 1.23365 0.97516 0.92466 0.84611 0.87708 1.46708 1.20280 1.65467 1.00601 1.19312 1.00662 1.28504 0.85650 0.89536 1.25401 0.98614 1.02748 0.99197 1.69717 1.22079 1.50198 1.17820 0.85244 0.77893 0.78103 0.78604 1.20456 1.23018 1.20894 1.21315 0.97948 0.94005 0.99335 1.19931 0.88127 0.96136 1.02488 0.88866 0.89249 0.88391 0.88701 0.89398 0.75911 0.91932 0.94506 0.94451 0.91259 0.90100 0.92287 0.94622 0.91547 0.90646 0.89950 0.90366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.65 10.51 71.24 0.75 0.10 16 2 C 0.20 3.84 8.16 137.97 1.13 4.97 16 3 N -0.52 -13.79 11.25 -175.88 -1.98 -15.77 16 4 C -0.02 -0.47 6.98 41.61 0.29 -0.18 16 5 C -0.03 -0.59 7.08 41.14 0.29 -0.30 16 6 N -0.55 -9.26 6.15 -174.58 -1.07 -10.33 16 7 H 0.43 4.27 8.96 -92.71 -0.83 3.44 16 8 C -0.02 -0.44 5.43 29.97 0.16 -0.28 16 9 C -0.09 -2.17 2.51 -11.36 -0.03 -2.20 16 10 H 0.10 2.42 8.12 -2.39 -0.02 2.40 16 11 C 0.52 15.45 7.13 87.66 0.63 16.08 16 12 O -0.58 -21.04 15.46 -3.04 -0.05 -21.08 16 13 N -0.70 -21.40 4.99 -433.32 -2.16 -23.56 16 14 C 0.14 4.77 2.84 46.95 0.13 4.90 16 15 H 0.09 2.92 7.22 -2.39 -0.02 2.90 16 16 C -0.13 -5.24 6.28 32.57 0.20 -5.04 16 17 C 0.14 6.20 4.67 46.23 0.22 6.41 16 18 H 0.11 5.98 5.52 -2.39 -0.01 5.97 16 19 C -0.13 -4.99 6.46 32.21 0.21 -4.78 16 20 C -0.12 -3.91 6.44 32.21 0.21 -3.70 16 21 C 0.13 4.45 5.06 46.20 0.23 4.69 16 22 H 0.11 3.29 8.14 -2.39 -0.02 3.27 16 23 N -0.61 -27.38 2.98 -615.26 -1.83 -29.21 16 24 C -0.21 -10.62 10.59 84.03 0.89 -9.73 16 25 H 0.09 4.05 7.83 -2.91 -0.02 4.02 16 26 C -0.07 -3.55 5.50 84.86 0.47 -3.08 16 27 N -0.95 -53.80 10.47 21.65 0.23 -53.57 16 28 Si 0.97 43.32 29.55 68.60 2.03 45.35 16 29 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 30 H -0.30 -14.06 7.11 99.48 0.71 -13.36 16 31 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 32 C -0.09 -2.04 4.64 30.76 0.14 -1.90 16 33 C -0.03 -0.65 6.30 30.03 0.19 -0.46 16 34 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 36 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 37 H 0.09 1.59 7.90 -2.39 -0.02 1.57 16 38 H 0.09 1.64 8.11 -2.39 -0.02 1.62 16 39 H 0.41 11.87 8.34 -92.71 -0.77 11.09 16 40 H 0.06 2.30 7.85 -2.38 -0.02 2.28 16 41 H 0.04 1.60 8.02 -2.39 -0.02 1.58 16 42 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.07 2.29 7.85 -2.39 -0.02 2.27 16 44 H 0.08 2.19 7.82 -2.39 -0.02 2.17 16 45 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 46 H 0.24 13.77 8.31 -92.71 -0.77 13.00 16 47 H 0.07 1.60 8.11 -2.39 -0.02 1.58 16 48 H 0.07 1.87 7.77 -2.39 -0.02 1.85 16 49 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 50 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -69.40 391.59 0.64 -68.77 By element: Atomic # 1 Polarization: 34.54 SS G_CDS: -0.63 Total: 33.90 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: 6.11 Total: 5.51 kcal Atomic # 7 Polarization: -125.63 SS G_CDS: -6.82 Total: -132.45 kcal Atomic # 8 Polarization: -21.04 SS G_CDS: -0.05 Total: -21.08 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -69.40 0.64 -68.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097374632.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.715 kcal (2) G-P(sol) polarization free energy of solvation -69.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds