Wall clock time and date at job start Wed Apr 1 2020 03:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 N 1.30785 * 125.72712 * 2 1 4 4 C 1.34419 * 109.32628 * 180.08428 * 3 2 1 5 5 C 1.33860 * 107.80064 * 0.02562 * 4 3 2 6 6 N 1.34410 * 125.72431 * 180.02562 * 2 1 3 7 7 C 1.46470 * 128.44671 * 359.76365 * 6 2 1 8 8 C 1.53273 * 108.69660 * 197.38846 * 7 6 2 9 9 H 1.09003 * 109.39476 * 69.27571 * 8 7 6 10 10 C 1.50703 * 109.43548 * 189.15762 * 8 7 6 11 11 O 1.21283 * 119.99488 * 0.23783 * 10 8 7 12 12 N 1.34777 * 120.00290 * 180.24222 * 10 8 7 13 13 C 1.46498 * 119.99828 * 180.27728 * 12 10 8 14 14 H 1.08997 * 110.56392 * 36.17005 * 13 12 10 15 15 C 1.54857 * 110.62617 * 273.26667 * 13 12 10 16 16 C 1.55842 * 103.44548 * 241.51215 * 15 13 12 17 17 H 1.09003 * 115.56035 * 159.56457 * 16 15 13 18 18 C 1.55839 * 105.06312 * 288.17391 * 16 15 13 19 19 C 1.54855 * 103.44718 * 71.82766 * 18 16 15 20 20 C 1.55846 * 110.62520 * 159.24204 * 13 12 10 21 21 H 1.08994 * 115.56369 * 318.92048 * 20 13 12 22 22 N 1.50243 * 101.04985 * 85.54965 * 20 13 12 23 23 C 1.36933 * 130.83964 * 233.94538 * 22 20 13 24 24 H 1.08002 * 119.99682 * 0.05416 * 23 22 20 25 25 C 1.38811 * 119.99923 * 180.02562 * 23 22 20 26 26 N 1.31615 * 120.00310 * 0.02562 * 25 23 22 27 27 Si 1.86807 * 119.99557 * 180.02562 * 25 23 22 28 28 H 1.48494 * 109.47070 * 90.00258 * 27 25 23 29 29 H 1.48500 * 109.46704 * 209.99758 * 27 25 23 30 30 H 1.48494 * 109.47454 * 329.99975 * 27 25 23 31 31 C 1.53118 * 109.70865 * 309.23008 * 8 7 6 32 32 C 1.50707 * 128.68743 * 179.97438 * 5 4 3 33 33 H 1.09008 * 109.46942 * 269.96765 * 1 2 3 34 34 H 1.08998 * 109.47690 * 29.97312 * 1 2 3 35 35 H 1.09007 * 109.47088 * 149.97557 * 1 2 3 36 36 H 1.07999 * 126.10127 * 180.02562 * 4 3 2 37 37 H 1.09001 * 109.60159 * 77.62000 * 7 6 2 38 38 H 1.09007 * 109.60029 * 317.15231 * 7 6 2 39 39 H 0.97001 * 119.99727 * 359.97438 * 12 10 8 40 40 H 1.08999 * 110.62000 * 0.02562 * 15 13 12 41 41 H 1.08999 * 110.62734 * 122.86055 * 15 13 12 42 42 H 1.09000 * 110.62721 * 190.31008 * 18 16 15 43 43 H 1.08998 * 110.63062 * 313.17388 * 18 16 15 44 44 H 1.08999 * 110.62887 * 118.48951 * 19 18 16 45 45 H 1.09002 * 110.62273 * 241.51021 * 19 18 16 46 46 H 0.96998 * 120.00257 * 180.02562 * 26 25 23 47 47 H 1.08994 * 109.49936 * 189.85878 * 31 8 7 48 48 H 1.09003 * 109.49241 * 309.96000 * 31 8 7 49 49 H 1.09005 * 109.74484 * 76.07703 * 32 5 4 50 50 H 1.08996 * 109.74270 * 315.35977 * 32 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2706 1.0617 0.0000 4 6 3.5601 0.6822 -0.0019 5 6 3.5928 -0.6560 -0.0036 6 7 2.2917 -1.0912 -0.0005 7 6 1.8922 -2.5003 0.0036 8 6 3.0926 -3.3501 0.4351 9 1 3.3039 -3.1693 1.4891 10 6 2.7738 -4.8088 0.2308 11 8 1.6963 -5.1366 -0.2194 12 7 3.6858 -5.7489 0.5483 13 6 3.3780 -7.1665 0.3439 14 1 2.7802 -7.3025 -0.5573 15 6 2.6454 -7.7491 1.5776 16 6 3.6125 -8.8627 2.0808 17 1 3.4775 -9.1693 3.1181 18 6 3.5035 -10.0021 1.0232 19 6 4.2361 -9.4196 -0.2104 20 6 4.6880 -8.0075 0.2698 21 1 5.5044 -7.5577 -0.2951 22 7 4.9459 -8.2678 1.7269 23 6 6.0550 -8.0349 2.4955 24 1 6.9347 -7.5906 2.0535 25 6 6.0485 -8.3693 3.8427 26 7 4.9765 -8.9107 4.3812 27 14 7.5613 -8.0509 4.8913 28 1 7.4762 -6.6918 5.4833 29 1 7.6317 -9.0606 5.9780 30 1 8.7786 -8.1474 4.0463 31 6 4.3186 -2.9746 -0.4018 32 6 4.7918 -1.5690 -0.0066 33 1 -0.3633 -0.0006 1.0277 34 1 -0.3634 0.8902 -0.5134 35 1 -0.3634 -0.8898 -0.5142 36 1 4.4169 1.3396 -0.0019 37 1 1.5773 -2.7941 -0.9977 38 1 1.0705 -2.6454 0.7050 39 1 4.5476 -5.4866 0.9080 40 1 2.5108 -6.9830 2.3412 41 1 1.6842 -8.1738 1.2882 42 1 4.0042 -10.9034 1.3768 43 1 2.4594 -10.2108 0.7898 44 1 5.1000 -10.0321 -0.4686 45 1 3.5554 -9.3374 -1.0578 46 1 4.9718 -9.1440 5.3227 47 1 5.1179 -3.6926 -0.2185 48 1 4.0544 -2.9855 -1.4592 49 1 5.2359 -1.5970 0.9885 50 1 5.5259 -1.2104 -0.7281 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001097726375.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:05 Heat of formation + Delta-G solvation = 42.554521 kcal Electronic energy + Delta-G solvation = -31032.476473 eV Core-core repulsion = 27060.505137 eV Total energy + Delta-G solvation = -3971.971337 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.39899 -41.41299 -40.13310 -37.27940 -35.38884 -34.46425 -34.23462 -32.30809 -30.97463 -30.95517 -30.34347 -29.24134 -27.36839 -26.20090 -25.57528 -23.63163 -22.77764 -21.88120 -21.53985 -21.00070 -20.27671 -19.91515 -18.83440 -18.32280 -17.51789 -17.25550 -16.80642 -16.74099 -16.16751 -15.77739 -15.53785 -15.44100 -15.13433 -14.92363 -14.75892 -14.48390 -14.34377 -13.95610 -13.78911 -13.68570 -13.64328 -13.24108 -12.91985 -12.90139 -12.89425 -12.80947 -12.74616 -12.67609 -12.18160 -12.09213 -11.99649 -11.94027 -11.87853 -11.69731 -11.20154 -10.96078 -10.94199 -10.91906 -10.65823 -10.51627 -9.95283 -9.14921 -8.85920 -7.74652 -5.13996 1.05331 1.50171 1.51474 1.55303 1.58833 1.66156 2.11084 2.29693 2.51524 3.22049 3.39132 3.45484 3.52011 3.54435 3.61003 3.77312 3.97845 4.03063 4.09798 4.16320 4.22611 4.28831 4.32023 4.40112 4.46765 4.50479 4.56555 4.62037 4.65515 4.68524 4.71346 4.82248 4.84859 4.90019 4.92230 4.98648 5.02582 5.09377 5.11113 5.18637 5.20155 5.39960 5.43618 5.53581 5.60346 5.71462 5.81561 5.91615 6.22860 6.27155 6.59305 7.07190 7.10106 7.21369 7.74610 8.60027 9.32864 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.013291 B = 0.002966 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.223559 B = 9438.896665 C =10598.184031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.194 3.806 3 N -0.530 5.530 4 C -0.046 4.046 5 C -0.031 4.031 6 N -0.454 5.454 7 C 0.129 3.871 8 C -0.112 4.112 9 H 0.110 0.890 10 C 0.524 3.476 11 O -0.579 6.579 12 N -0.698 5.698 13 C 0.141 3.859 14 H 0.088 0.912 15 C -0.132 4.132 16 C 0.141 3.859 17 H 0.111 0.889 18 C -0.134 4.134 19 C -0.120 4.120 20 C 0.129 3.871 21 H 0.108 0.892 22 N -0.608 5.608 23 C -0.211 4.211 24 H 0.088 0.912 25 C -0.067 4.067 26 N -0.949 5.949 27 Si 0.971 3.029 28 H -0.290 1.290 29 H -0.305 1.305 30 H -0.270 1.270 31 C -0.110 4.110 32 C -0.038 4.038 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.185 0.815 37 H 0.094 0.906 38 H 0.098 0.902 39 H 0.408 0.592 40 H 0.033 0.967 41 H 0.064 0.936 42 H 0.035 0.965 43 H 0.069 0.931 44 H 0.059 0.941 45 H 0.082 0.918 46 H 0.244 0.756 47 H 0.098 0.902 48 H 0.073 0.927 49 H 0.095 0.905 50 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.389 11.722 -11.509 16.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.068 4.068 3 N -0.250 5.250 4 C -0.192 4.192 5 C -0.145 4.145 6 N -0.137 5.137 7 C 0.007 3.993 8 C -0.133 4.133 9 H 0.128 0.872 10 C 0.310 3.690 11 O -0.459 6.459 12 N -0.346 5.346 13 C 0.035 3.965 14 H 0.106 0.894 15 C -0.173 4.173 16 C 0.034 3.966 17 H 0.129 0.871 18 C -0.173 4.173 19 C -0.160 4.160 20 C 0.022 3.978 21 H 0.126 0.874 22 N -0.329 5.329 23 C -0.340 4.340 24 H 0.106 0.894 25 C -0.260 4.260 26 N -0.599 5.599 27 Si 0.801 3.199 28 H -0.218 1.218 29 H -0.232 1.232 30 H -0.195 1.195 31 C -0.148 4.148 32 C -0.076 4.076 33 H 0.107 0.893 34 H 0.114 0.886 35 H 0.104 0.896 36 H 0.202 0.798 37 H 0.112 0.888 38 H 0.116 0.884 39 H 0.244 0.756 40 H 0.052 0.948 41 H 0.082 0.918 42 H 0.054 0.946 43 H 0.087 0.913 44 H 0.077 0.923 45 H 0.100 0.900 46 H 0.053 0.947 47 H 0.116 0.884 48 H 0.092 0.908 49 H 0.114 0.886 50 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -4.296 12.135 -11.566 17.306 hybrid contribution 1.203 -0.812 1.363 1.991 sum -3.093 11.323 -10.204 15.553 Atomic orbital electron populations 1.20301 0.83024 1.04870 1.04386 1.23714 0.96939 0.81016 1.05173 1.70416 1.03048 1.29204 1.22344 1.22193 0.94922 0.92859 1.09232 1.21602 0.86329 0.95694 1.10877 1.45392 1.06644 1.07281 1.54406 1.21646 0.97238 0.76129 1.04298 1.21495 0.97326 0.90704 1.03813 0.87224 1.20443 0.83791 0.87863 0.76889 1.90676 1.24582 1.83454 1.47226 1.45923 1.18734 1.06183 1.63782 1.22444 0.97490 0.79509 0.97103 0.89425 1.23303 0.98094 0.99049 0.96837 1.23509 0.83501 0.90767 0.98804 0.87150 1.22971 0.99169 0.98292 0.96876 1.22844 0.99742 0.96417 0.96955 1.23354 0.94096 0.94410 0.85988 0.87431 1.46682 1.11389 1.70505 1.04371 1.19357 0.91644 1.32568 0.90405 0.89378 1.25398 0.99831 1.02621 0.98126 1.69744 1.28936 1.49633 1.11539 0.85175 0.79786 0.76533 0.78403 1.21766 1.23236 1.19492 1.21664 0.95679 0.97937 0.99487 1.20324 0.92246 0.90608 1.04450 0.89292 0.88639 0.89563 0.79831 0.88824 0.88405 0.75637 0.94849 0.91782 0.94569 0.91251 0.92251 0.89959 0.94677 0.88395 0.90796 0.88631 0.86922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.10 10.24 71.23 0.73 -0.37 16 2 C 0.19 4.61 7.94 138.24 1.10 5.71 16 3 N -0.53 -14.58 11.27 -188.79 -2.13 -16.71 16 4 C -0.05 -1.08 11.84 83.30 0.99 -0.09 16 5 C -0.03 -0.65 6.57 40.73 0.27 -0.38 16 6 N -0.45 -10.10 3.13 -500.14 -1.57 -11.67 16 7 C 0.13 2.67 5.32 86.48 0.46 3.13 16 8 C -0.11 -2.27 2.52 -11.41 -0.03 -2.30 16 9 H 0.11 2.23 8.11 -2.39 -0.02 2.21 16 10 C 0.52 14.07 7.15 87.66 0.63 14.70 16 11 O -0.58 -19.07 15.55 -3.04 -0.05 -19.12 16 12 N -0.70 -19.59 4.92 -434.90 -2.14 -21.73 16 13 C 0.14 4.50 2.73 46.61 0.13 4.63 16 14 H 0.09 2.71 7.36 -2.39 -0.02 2.70 16 15 C -0.13 -5.02 6.22 32.21 0.20 -4.82 16 16 C 0.14 6.13 4.69 46.22 0.22 6.35 16 17 H 0.11 5.80 5.57 -2.39 -0.01 5.79 16 18 C -0.13 -4.89 6.44 32.21 0.21 -4.69 16 19 C -0.12 -3.74 6.44 32.21 0.21 -3.53 16 20 C 0.13 4.29 5.04 46.23 0.23 4.52 16 21 H 0.11 3.18 8.14 -2.39 -0.02 3.16 16 22 N -0.61 -26.61 2.99 -615.24 -1.84 -28.45 16 23 C -0.21 -10.33 10.59 84.03 0.89 -9.44 16 24 H 0.09 4.04 7.83 -2.91 -0.02 4.02 16 25 C -0.07 -3.50 5.50 84.86 0.47 -3.04 16 26 N -0.95 -53.17 10.48 21.65 0.23 -52.94 16 27 Si 0.97 42.82 29.55 68.60 2.03 44.85 16 28 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 29 H -0.31 -14.05 7.11 99.48 0.71 -13.34 16 30 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 31 C -0.11 -1.74 5.23 30.80 0.16 -1.58 16 32 C -0.04 -0.56 6.31 30.01 0.19 -0.37 16 33 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 34 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.09 1.16 7.95 -2.38 -0.02 1.14 16 36 H 0.18 3.41 8.06 -2.91 -0.02 3.39 16 37 H 0.09 1.99 7.81 -2.39 -0.02 1.97 16 38 H 0.10 1.99 8.14 -2.38 -0.02 1.97 16 39 H 0.41 10.87 7.95 -92.71 -0.74 10.13 16 40 H 0.03 1.40 7.98 -2.39 -0.02 1.38 16 41 H 0.06 2.26 7.83 -2.39 -0.02 2.24 16 42 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.07 2.22 7.82 -2.39 -0.02 2.20 16 44 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 45 H 0.08 2.10 7.82 -2.39 -0.02 2.09 16 46 H 0.24 13.57 8.31 -92.71 -0.77 12.80 16 47 H 0.10 1.36 7.31 -2.39 -0.02 1.34 16 48 H 0.07 1.21 8.12 -2.39 -0.02 1.19 16 49 H 0.10 1.28 8.14 -2.38 -0.02 1.26 16 50 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -66.90 390.94 1.79 -65.11 By element: Atomic # 1 Polarization: 32.01 SS G_CDS: 0.21 Total: 32.22 kcal Atomic # 6 Polarization: 1.39 SS G_CDS: 7.04 Total: 8.43 kcal Atomic # 7 Polarization: -124.05 SS G_CDS: -7.44 Total: -131.49 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: -0.05 Total: -19.12 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -66.90 1.79 -65.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097726375.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.663 kcal (2) G-P(sol) polarization free energy of solvation -66.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds