Wall clock time and date at job start Wed Apr 1 2020 03:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30785 * 125.72417 * 2 1 4 4 C 1.34433 * 109.32171 * 179.97438 * 3 2 1 5 5 C 1.33859 * 107.79399 * 0.22167 * 4 3 2 6 6 N 1.34415 * 125.72345 * 179.97438 * 2 1 3 7 7 C 1.46471 * 128.44367 * 0.18897 * 6 2 1 8 8 C 1.53469 * 108.62841 * 162.18828 * 7 6 2 9 9 H 1.09005 * 109.66818 * 290.92330 * 8 7 6 10 10 C 1.50702 * 109.32953 * 170.93928 * 8 7 6 11 11 O 1.21281 * 119.99923 * 0.03020 * 10 8 7 12 12 N 1.34775 * 119.99989 * 180.02562 * 10 8 7 13 13 C 1.46497 * 119.99851 * 180.02562 * 12 10 8 14 14 H 1.08992 * 110.56484 * 32.09306 * 13 12 10 15 15 C 1.54861 * 110.62343 * 269.02225 * 13 12 10 16 16 C 1.55852 * 103.44227 * 241.51078 * 15 13 12 17 17 H 1.08995 * 116.12179 * 159.14841 * 16 15 13 18 18 C 1.55839 * 105.06265 * 288.17454 * 16 15 13 19 19 C 1.54849 * 103.45062 * 71.82831 * 18 16 15 20 20 C 1.55844 * 110.62739 * 154.99914 * 13 12 10 21 21 H 1.08999 * 115.56280 * 319.67023 * 20 13 12 22 22 N 1.50235 * 101.05471 * 85.54999 * 20 13 12 23 23 C 1.36935 * 130.83859 * 233.95379 * 22 20 13 24 24 H 1.08003 * 119.99984 * 359.97438 * 23 22 20 25 25 C 1.38810 * 120.00180 * 179.97438 * 23 22 20 26 26 N 1.31626 * 120.00026 * 359.97438 * 25 23 22 27 27 Si 1.86801 * 120.00118 * 179.97438 * 25 23 22 28 28 H 1.48503 * 109.46990 * 89.99726 * 27 25 23 29 29 H 1.48499 * 109.47044 * 209.99291 * 27 25 23 30 30 H 1.48492 * 109.47174 * 329.99812 * 27 25 23 31 31 C 1.53115 * 109.53989 * 51.03311 * 8 7 6 32 32 C 1.50710 * 128.67494 * 179.97438 * 5 4 3 33 33 H 1.09001 * 109.46528 * 90.02743 * 1 2 3 34 34 H 1.08999 * 109.46742 * 210.02821 * 1 2 3 35 35 H 1.08991 * 109.47043 * 330.02831 * 1 2 3 36 36 H 1.08002 * 126.09828 * 179.97438 * 4 3 2 37 37 H 1.09000 * 109.59933 * 282.46496 * 7 6 2 38 38 H 1.09001 * 109.59894 * 42.93453 * 7 6 2 39 39 H 0.97001 * 120.00366 * 359.97438 * 12 10 8 40 40 H 1.09002 * 110.62530 * 359.97438 * 15 13 12 41 41 H 1.08990 * 110.62818 * 123.02189 * 15 13 12 42 42 H 1.09002 * 110.62276 * 190.32038 * 18 16 15 43 43 H 1.09000 * 110.62946 * 313.33503 * 18 16 15 44 44 H 1.09000 * 110.62924 * 241.51613 * 19 18 16 45 45 H 1.09001 * 110.62998 * 118.48616 * 19 18 16 46 46 H 0.96997 * 119.99736 * 180.02562 * 26 25 23 47 47 H 1.09004 * 109.50228 * 169.95479 * 31 8 7 48 48 H 1.09002 * 109.52642 * 49.86943 * 31 8 7 49 49 H 1.08998 * 109.75040 * 283.80462 * 32 5 4 50 50 H 1.09005 * 109.74773 * 44.52375 * 32 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2706 1.0618 0.0000 4 6 3.5603 0.6821 0.0006 5 6 3.5928 -0.6560 -0.0040 6 7 2.2918 -1.0912 0.0005 7 6 1.8922 -2.5004 -0.0027 8 6 3.0917 -3.3491 -0.4456 9 1 3.3009 -3.1668 -1.4997 10 6 2.7726 -4.8079 -0.2427 11 8 1.6960 -5.1360 0.2092 12 7 3.6835 -5.7479 -0.5636 13 6 3.3731 -7.1661 -0.3670 14 1 2.3086 -7.3488 -0.5130 15 6 3.8222 -7.6328 1.0397 16 6 4.8787 -8.7372 0.7348 17 1 5.5801 -8.9649 1.5374 18 6 4.0564 -9.9469 0.1971 19 6 3.6073 -9.4803 -1.2095 20 6 4.2194 -8.0520 -1.3300 21 1 4.3392 -7.6650 -2.3419 22 7 5.4847 -8.2131 -0.5361 23 6 6.7888 -7.9604 -0.8686 24 1 7.0319 -7.5793 -1.8495 25 6 7.7983 -8.1940 0.0551 26 7 7.5020 -8.6579 1.2507 27 14 9.5774 -7.8499 -0.3988 28 1 9.9167 -6.4485 -0.0434 29 1 10.4664 -8.7782 0.3450 30 1 9.7633 -8.0493 -1.8584 31 6 4.3196 -2.9754 0.3893 32 6 4.7919 -1.5690 -0.0059 33 1 -0.3632 -0.0005 -1.0277 34 1 -0.3633 -0.8897 0.5143 35 1 -0.3633 0.8902 0.5134 36 1 4.4171 1.3396 0.0003 37 1 1.5765 -2.7931 0.9987 38 1 1.0711 -2.6460 -0.7045 39 1 4.5444 -5.4856 -0.9255 40 1 4.2762 -6.8092 1.5907 41 1 2.9804 -8.0489 1.5931 42 1 4.6834 -10.8356 0.1248 43 1 3.1917 -10.1365 0.8330 44 1 2.5199 -9.4383 -1.2712 45 1 4.0116 -10.1375 -1.9794 46 1 8.2075 -8.8207 1.8962 47 1 5.1186 -3.6930 0.2027 48 1 4.0585 -2.9887 1.4475 49 1 5.2342 -1.5939 -1.0018 50 1 5.5273 -1.2126 0.7154 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001097726376.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:10 Heat of formation + Delta-G solvation = 58.955141 kcal Electronic energy + Delta-G solvation = -31105.211884 eV Core-core repulsion = 27133.951731 eV Total energy + Delta-G solvation = -3971.260153 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.50479 -40.10897 -38.76169 -36.30126 -34.07622 -33.40624 -32.62411 -31.38911 -30.11744 -29.20678 -28.89189 -27.80142 -26.53001 -24.78647 -24.20845 -22.66427 -21.57630 -20.86894 -19.98283 -19.75577 -19.06579 -18.72983 -17.29863 -17.09181 -16.52179 -16.00786 -15.81982 -15.06697 -14.90805 -14.65143 -14.28227 -14.12862 -14.06778 -13.85589 -13.56032 -13.53366 -13.16122 -13.04209 -12.89584 -12.55630 -12.14253 -12.07144 -11.95322 -11.90751 -11.44818 -11.25483 -11.21726 -11.14067 -11.02075 -10.97416 -10.61411 -10.44807 -10.18021 -10.02940 -10.00513 -9.82893 -9.60112 -9.33687 -9.24771 -9.05908 -8.61176 -8.27649 -7.04509 -5.83538 -3.23164 1.93564 2.56152 2.69806 3.03154 3.29179 3.35133 3.37382 3.41992 4.11436 4.32265 4.33906 4.43291 4.49863 4.61044 4.87944 4.99443 5.02490 5.07686 5.13935 5.23559 5.26541 5.29613 5.32520 5.46352 5.54667 5.58536 5.60420 5.65164 5.68117 5.78984 5.86021 5.90733 5.96104 5.99821 6.05705 6.20202 6.30377 6.32837 6.39371 6.51475 6.64377 6.67532 6.73206 6.85657 6.99043 7.10587 7.22216 7.37885 7.69957 7.79886 8.00490 8.07904 8.38922 8.97998 9.61436 10.41934 11.25267 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.013518 B = 0.003079 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.748522 B = 9092.683128 C =10681.039274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.205 3.795 3 N -0.496 5.496 4 C -0.025 4.025 5 C -0.025 4.025 6 N -0.450 5.450 7 C 0.125 3.875 8 C -0.119 4.119 9 H 0.105 0.895 10 C 0.520 3.480 11 O -0.552 6.552 12 N -0.698 5.698 13 C 0.127 3.873 14 H 0.081 0.919 15 C -0.142 4.142 16 C 0.154 3.846 17 H 0.153 0.847 18 C -0.140 4.140 19 C -0.127 4.127 20 C 0.125 3.875 21 H 0.087 0.913 22 N -0.590 5.590 23 C -0.217 4.217 24 H 0.078 0.922 25 C -0.008 4.008 26 N -0.918 5.918 27 Si 0.914 3.086 28 H -0.289 1.289 29 H -0.291 1.291 30 H -0.282 1.282 31 C -0.118 4.118 32 C -0.044 4.044 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.089 0.911 36 H 0.168 0.832 37 H 0.097 0.903 38 H 0.095 0.905 39 H 0.404 0.596 40 H 0.059 0.941 41 H 0.053 0.947 42 H 0.055 0.945 43 H 0.048 0.952 44 H 0.051 0.949 45 H 0.057 0.943 46 H 0.255 0.745 47 H 0.090 0.910 48 H 0.075 0.925 49 H 0.085 0.915 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.797 10.422 -3.111 14.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.057 4.057 3 N -0.215 5.215 4 C -0.173 4.173 5 C -0.139 4.139 6 N -0.134 5.134 7 C 0.003 3.997 8 C -0.141 4.141 9 H 0.123 0.877 10 C 0.304 3.696 11 O -0.431 6.431 12 N -0.347 5.347 13 C 0.021 3.979 14 H 0.099 0.901 15 C -0.182 4.182 16 C 0.047 3.953 17 H 0.170 0.830 18 C -0.179 4.179 19 C -0.167 4.167 20 C 0.016 3.984 21 H 0.105 0.895 22 N -0.311 5.311 23 C -0.345 4.345 24 H 0.096 0.904 25 C -0.204 4.204 26 N -0.566 5.566 27 Si 0.745 3.255 28 H -0.216 1.216 29 H -0.217 1.217 30 H -0.208 1.208 31 C -0.156 4.156 32 C -0.082 4.082 33 H 0.097 0.903 34 H 0.092 0.908 35 H 0.107 0.893 36 H 0.186 0.814 37 H 0.115 0.885 38 H 0.113 0.887 39 H 0.239 0.761 40 H 0.078 0.922 41 H 0.072 0.928 42 H 0.074 0.926 43 H 0.067 0.933 44 H 0.070 0.930 45 H 0.076 0.924 46 H 0.065 0.935 47 H 0.108 0.892 48 H 0.093 0.907 49 H 0.104 0.896 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -10.558 10.833 -2.734 15.372 hybrid contribution 1.655 -0.594 -0.442 1.813 sum -8.903 10.239 -3.177 13.935 Atomic orbital electron populations 1.20169 0.85049 1.03991 1.03416 1.23091 0.95591 0.81169 1.05817 1.70436 1.02015 1.28054 1.21036 1.21800 0.94783 0.91954 1.08727 1.21186 0.85689 0.95460 1.11599 1.45295 1.06401 1.07227 1.54478 1.21734 0.97151 0.76448 1.04377 1.21604 0.96483 0.93085 1.02958 0.87651 1.20045 0.84550 0.86913 0.78098 1.90684 1.23976 1.82735 1.45670 1.45994 1.18124 1.06815 1.63774 1.22693 0.98713 0.78711 0.97778 0.90149 1.23438 0.99053 1.00777 0.94932 1.23762 0.91081 0.88583 0.91856 0.82989 1.23074 0.98783 1.00509 0.95535 1.22875 0.98101 0.97532 0.98234 1.23171 0.87664 0.93432 0.94114 0.89456 1.46536 1.00032 1.74105 1.10433 1.18987 0.80529 1.36783 0.98183 0.90419 1.24701 0.97912 1.01756 0.96055 1.69458 1.31077 1.50652 1.05398 0.86080 0.84373 0.77574 0.77474 1.21638 1.21673 1.20791 1.21708 0.96443 0.97311 1.00160 1.20242 0.92949 0.91790 1.03193 0.90284 0.90784 0.89266 0.81431 0.88510 0.88665 0.76079 0.92235 0.92806 0.92591 0.93316 0.93011 0.92407 0.93475 0.89173 0.90666 0.89623 0.88968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.58 10.24 36.01 0.37 -0.21 16 2 C 0.21 2.53 7.94 -155.75 -1.24 1.29 16 3 N -0.50 -7.00 11.27 -11.02 -0.12 -7.13 16 4 C -0.03 -0.32 11.84 -17.95 -0.21 -0.53 16 5 C -0.03 -0.30 6.57 -81.73 -0.54 -0.83 16 6 N -0.45 -5.35 3.13 -109.32 -0.34 -5.70 16 7 C 0.13 1.38 5.30 -3.81 -0.02 1.36 16 8 C -0.12 -1.33 2.53 -91.47 -0.23 -1.56 16 9 H 0.11 1.05 8.11 -51.93 -0.42 0.63 16 10 C 0.52 7.44 7.15 -10.99 -0.08 7.36 16 11 O -0.55 -9.51 15.48 5.56 0.09 -9.43 16 12 N -0.70 -10.55 4.89 -51.40 -0.25 -10.80 16 13 C 0.13 2.17 2.80 -65.43 -0.18 1.99 16 14 H 0.08 1.39 7.23 -51.93 -0.38 1.01 16 15 C -0.14 -2.70 6.23 -24.23 -0.15 -2.85 16 16 C 0.15 3.31 4.72 -62.80 -0.30 3.01 16 17 H 0.15 3.80 5.52 -51.93 -0.29 3.52 16 18 C -0.14 -2.63 6.44 -24.24 -0.16 -2.78 16 19 C -0.13 -2.18 6.44 -24.23 -0.16 -2.34 16 20 C 0.12 2.26 5.06 -62.80 -0.32 1.94 16 21 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 22 N -0.59 -13.10 2.98 -145.82 -0.44 -13.53 16 23 C -0.22 -5.36 10.59 -15.06 -0.16 -5.52 16 24 H 0.08 1.85 7.83 -52.48 -0.41 1.44 16 25 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 26 N -0.92 -24.67 10.47 55.49 0.58 -24.09 16 27 Si 0.91 20.51 29.55 -169.99 -5.02 15.49 16 28 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 29 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 30 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 31 C -0.12 -1.27 5.23 -26.39 -0.14 -1.41 16 32 C -0.04 -0.42 6.31 -27.60 -0.17 -0.59 16 33 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.54 7.95 -51.93 -0.41 0.13 16 35 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.17 1.71 8.06 -52.49 -0.42 1.29 16 37 H 0.10 1.14 7.83 -51.93 -0.41 0.74 16 38 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.40 5.90 7.99 -40.82 -0.33 5.58 16 40 H 0.06 1.22 7.98 -51.93 -0.41 0.81 16 41 H 0.05 0.97 7.81 -51.93 -0.41 0.56 16 42 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 43 H 0.05 0.82 7.82 -51.93 -0.41 0.41 16 44 H 0.05 0.78 7.82 -51.93 -0.41 0.37 16 45 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 46 H 0.25 6.73 8.31 -40.82 -0.34 6.39 16 47 H 0.09 1.00 7.31 -51.93 -0.38 0.62 16 48 H 0.07 0.88 8.12 -51.93 -0.42 0.46 16 49 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 50 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 390.81 15.07 5.89 5.89 Total: -1.00 -30.12 390.81 -11.41 -41.53 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: -8.01 Total: 9.73 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: -3.78 Total: -1.97 kcal Atomic # 7 Polarization: -60.67 SS G_CDS: -0.57 Total: -61.24 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: 0.09 Total: -9.43 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -30.12 -11.41 -41.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097726376.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.488 kcal (2) G-P(sol) polarization free energy of solvation -30.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds