Wall clock time and date at job start Wed Apr 1 2020 03:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30785 * 125.72417 * 2 1 4 4 C 1.34433 * 109.32171 * 179.97438 * 3 2 1 5 5 C 1.33859 * 107.79399 * 0.22167 * 4 3 2 6 6 N 1.34415 * 125.72345 * 179.97438 * 2 1 3 7 7 C 1.46471 * 128.44367 * 0.18897 * 6 2 1 8 8 C 1.53469 * 108.62841 * 162.18828 * 7 6 2 9 9 H 1.09005 * 109.66818 * 290.92330 * 8 7 6 10 10 C 1.50702 * 109.32953 * 170.93928 * 8 7 6 11 11 O 1.21281 * 119.99923 * 0.03020 * 10 8 7 12 12 N 1.34775 * 119.99989 * 180.02562 * 10 8 7 13 13 C 1.46497 * 119.99851 * 180.02562 * 12 10 8 14 14 H 1.08992 * 110.56484 * 32.09306 * 13 12 10 15 15 C 1.54861 * 110.62343 * 269.02225 * 13 12 10 16 16 C 1.55852 * 103.44227 * 241.51078 * 15 13 12 17 17 H 1.08995 * 116.12179 * 159.14841 * 16 15 13 18 18 C 1.55839 * 105.06265 * 288.17454 * 16 15 13 19 19 C 1.54849 * 103.45062 * 71.82831 * 18 16 15 20 20 C 1.55844 * 110.62739 * 154.99914 * 13 12 10 21 21 H 1.08999 * 115.56280 * 319.67023 * 20 13 12 22 22 N 1.50235 * 101.05471 * 85.54999 * 20 13 12 23 23 C 1.36935 * 130.83859 * 233.95379 * 22 20 13 24 24 H 1.08003 * 119.99984 * 359.97438 * 23 22 20 25 25 C 1.38810 * 120.00180 * 179.97438 * 23 22 20 26 26 N 1.31626 * 120.00026 * 359.97438 * 25 23 22 27 27 Si 1.86801 * 120.00118 * 179.97438 * 25 23 22 28 28 H 1.48503 * 109.46990 * 89.99726 * 27 25 23 29 29 H 1.48499 * 109.47044 * 209.99291 * 27 25 23 30 30 H 1.48492 * 109.47174 * 329.99812 * 27 25 23 31 31 C 1.53115 * 109.53989 * 51.03311 * 8 7 6 32 32 C 1.50710 * 128.67494 * 179.97438 * 5 4 3 33 33 H 1.09001 * 109.46528 * 90.02743 * 1 2 3 34 34 H 1.08999 * 109.46742 * 210.02821 * 1 2 3 35 35 H 1.08991 * 109.47043 * 330.02831 * 1 2 3 36 36 H 1.08002 * 126.09828 * 179.97438 * 4 3 2 37 37 H 1.09000 * 109.59933 * 282.46496 * 7 6 2 38 38 H 1.09001 * 109.59894 * 42.93453 * 7 6 2 39 39 H 0.97001 * 120.00366 * 359.97438 * 12 10 8 40 40 H 1.09002 * 110.62530 * 359.97438 * 15 13 12 41 41 H 1.08990 * 110.62818 * 123.02189 * 15 13 12 42 42 H 1.09002 * 110.62276 * 190.32038 * 18 16 15 43 43 H 1.09000 * 110.62946 * 313.33503 * 18 16 15 44 44 H 1.09000 * 110.62924 * 241.51613 * 19 18 16 45 45 H 1.09001 * 110.62998 * 118.48616 * 19 18 16 46 46 H 0.96997 * 119.99736 * 180.02562 * 26 25 23 47 47 H 1.09004 * 109.50228 * 169.95479 * 31 8 7 48 48 H 1.09002 * 109.52642 * 49.86943 * 31 8 7 49 49 H 1.08998 * 109.75040 * 283.80462 * 32 5 4 50 50 H 1.09005 * 109.74773 * 44.52375 * 32 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2706 1.0618 0.0000 4 6 3.5603 0.6821 0.0006 5 6 3.5928 -0.6560 -0.0040 6 7 2.2918 -1.0912 0.0005 7 6 1.8922 -2.5004 -0.0027 8 6 3.0917 -3.3491 -0.4456 9 1 3.3009 -3.1668 -1.4997 10 6 2.7726 -4.8079 -0.2427 11 8 1.6960 -5.1360 0.2092 12 7 3.6835 -5.7479 -0.5636 13 6 3.3731 -7.1661 -0.3670 14 1 2.3086 -7.3488 -0.5130 15 6 3.8222 -7.6328 1.0397 16 6 4.8787 -8.7372 0.7348 17 1 5.5801 -8.9649 1.5374 18 6 4.0564 -9.9469 0.1971 19 6 3.6073 -9.4803 -1.2095 20 6 4.2194 -8.0520 -1.3300 21 1 4.3392 -7.6650 -2.3419 22 7 5.4847 -8.2131 -0.5361 23 6 6.7888 -7.9604 -0.8686 24 1 7.0319 -7.5793 -1.8495 25 6 7.7983 -8.1940 0.0551 26 7 7.5020 -8.6579 1.2507 27 14 9.5774 -7.8499 -0.3988 28 1 9.9167 -6.4485 -0.0434 29 1 10.4664 -8.7782 0.3450 30 1 9.7633 -8.0493 -1.8584 31 6 4.3196 -2.9754 0.3893 32 6 4.7919 -1.5690 -0.0059 33 1 -0.3632 -0.0005 -1.0277 34 1 -0.3633 -0.8897 0.5143 35 1 -0.3633 0.8902 0.5134 36 1 4.4171 1.3396 0.0003 37 1 1.5765 -2.7931 0.9987 38 1 1.0711 -2.6460 -0.7045 39 1 4.5444 -5.4856 -0.9255 40 1 4.2762 -6.8092 1.5907 41 1 2.9804 -8.0489 1.5931 42 1 4.6834 -10.8356 0.1248 43 1 3.1917 -10.1365 0.8330 44 1 2.5199 -9.4383 -1.2712 45 1 4.0116 -10.1375 -1.9794 46 1 8.2075 -8.8207 1.8962 47 1 5.1186 -3.6930 0.2027 48 1 4.0585 -2.9887 1.4475 49 1 5.2342 -1.5939 -1.0018 50 1 5.5273 -1.2126 0.7154 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001097726376.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:09 Heat of formation + Delta-G solvation = 42.851273 kcal Electronic energy + Delta-G solvation = -31105.910200 eV Core-core repulsion = 27133.951731 eV Total energy + Delta-G solvation = -3971.958469 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.39986 -41.41221 -40.13562 -37.28524 -35.38806 -34.46303 -34.23833 -32.30385 -30.97549 -30.95148 -30.33800 -29.23480 -27.36651 -26.19911 -25.57807 -23.61265 -22.80170 -21.89159 -21.51854 -21.00654 -20.27360 -19.93865 -18.82998 -18.32662 -17.46504 -17.29598 -16.80474 -16.72935 -16.13407 -15.78455 -15.60640 -15.44243 -15.07007 -14.94926 -14.71883 -14.56233 -14.30736 -13.95649 -13.78042 -13.70034 -13.62015 -13.23670 -12.95225 -12.89209 -12.85298 -12.81996 -12.74467 -12.70105 -12.18841 -12.09988 -12.01447 -11.94197 -11.88255 -11.68985 -11.20186 -10.96436 -10.93376 -10.91618 -10.66459 -10.51143 -9.95823 -9.15532 -8.84991 -7.73820 -5.13449 1.05202 1.50814 1.52477 1.55134 1.59610 1.64938 2.10977 2.30485 2.52134 3.21009 3.39557 3.46214 3.51384 3.54050 3.60743 3.76365 3.98104 4.03526 4.10059 4.14422 4.19995 4.28818 4.29810 4.37852 4.46974 4.50565 4.57090 4.62268 4.64657 4.70510 4.71411 4.81478 4.84741 4.89076 4.92210 4.98203 5.03130 5.06988 5.10964 5.18551 5.20263 5.39570 5.42631 5.53599 5.60446 5.71503 5.80302 5.91837 6.23730 6.29451 6.59147 7.08028 7.09930 7.20718 7.75230 8.60537 9.33292 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.013518 B = 0.003079 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.748522 B = 9092.683128 C =10681.039274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.196 3.804 3 N -0.530 5.530 4 C -0.044 4.044 5 C -0.030 4.030 6 N -0.454 5.454 7 C 0.129 3.871 8 C -0.108 4.108 9 H 0.125 0.875 10 C 0.523 3.477 11 O -0.579 6.579 12 N -0.698 5.698 13 C 0.140 3.860 14 H 0.089 0.911 15 C -0.131 4.131 16 C 0.139 3.861 17 H 0.114 0.886 18 C -0.134 4.134 19 C -0.120 4.120 20 C 0.127 3.873 21 H 0.104 0.896 22 N -0.609 5.609 23 C -0.211 4.211 24 H 0.086 0.914 25 C -0.065 4.065 26 N -0.947 5.947 27 Si 0.970 3.030 28 H -0.288 1.288 29 H -0.305 1.305 30 H -0.272 1.272 31 C -0.114 4.114 32 C -0.036 4.036 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.093 0.907 36 H 0.183 0.817 37 H 0.087 0.913 38 H 0.108 0.892 39 H 0.408 0.592 40 H 0.036 0.964 41 H 0.064 0.936 42 H 0.036 0.964 43 H 0.069 0.931 44 H 0.081 0.919 45 H 0.058 0.942 46 H 0.244 0.756 47 H 0.087 0.913 48 H 0.061 0.939 49 H 0.103 0.897 50 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.920 11.122 -4.912 16.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.066 4.066 3 N -0.250 5.250 4 C -0.191 4.191 5 C -0.145 4.145 6 N -0.137 5.137 7 C 0.007 3.993 8 C -0.129 4.129 9 H 0.143 0.857 10 C 0.310 3.690 11 O -0.459 6.459 12 N -0.347 5.347 13 C 0.033 3.967 14 H 0.107 0.893 15 C -0.172 4.172 16 C 0.033 3.967 17 H 0.132 0.868 18 C -0.173 4.173 19 C -0.159 4.159 20 C 0.020 3.980 21 H 0.122 0.878 22 N -0.330 5.330 23 C -0.340 4.340 24 H 0.104 0.896 25 C -0.258 4.258 26 N -0.597 5.597 27 Si 0.801 3.199 28 H -0.215 1.215 29 H -0.232 1.232 30 H -0.198 1.198 31 C -0.152 4.152 32 C -0.074 4.074 33 H 0.112 0.888 34 H 0.104 0.896 35 H 0.112 0.888 36 H 0.200 0.800 37 H 0.105 0.895 38 H 0.126 0.874 39 H 0.244 0.756 40 H 0.055 0.945 41 H 0.082 0.918 42 H 0.054 0.946 43 H 0.088 0.912 44 H 0.100 0.900 45 H 0.076 0.924 46 H 0.054 0.946 47 H 0.106 0.894 48 H 0.079 0.921 49 H 0.121 0.879 50 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -11.699 11.549 -4.568 17.062 hybrid contribution 1.944 -0.809 0.138 2.110 sum -9.755 10.740 -4.430 15.170 Atomic orbital electron populations 1.20312 0.82805 1.04815 1.04596 1.23758 0.96988 0.80921 1.04942 1.70426 1.02926 1.29232 1.22413 1.22171 0.94977 0.92774 1.09167 1.21509 0.86278 0.95613 1.11056 1.45383 1.06501 1.07367 1.54457 1.21705 0.97379 0.76020 1.04193 1.21524 0.96625 0.90617 1.04140 0.85697 1.20472 0.83742 0.87912 0.76909 1.90675 1.25123 1.83379 1.46748 1.45934 1.18528 1.06253 1.63950 1.22444 0.98701 0.79682 0.95831 0.89324 1.23289 0.98424 0.99243 0.96232 1.23579 0.91370 0.90651 0.91124 0.86843 1.22979 0.98753 0.98461 0.97132 1.22835 0.99846 0.96499 0.96747 1.23376 0.85781 0.94299 0.94570 0.87844 1.46704 1.00498 1.74285 1.11517 1.19331 0.81798 1.34794 0.98100 0.89598 1.25375 1.01051 1.03006 0.96323 1.69717 1.31137 1.52658 1.06217 0.85183 0.80599 0.76849 0.77303 1.21488 1.23246 1.19760 1.21652 0.96153 0.98084 0.99287 1.20287 0.92343 0.90314 1.04494 0.88840 0.89595 0.88793 0.79966 0.89503 0.87419 0.75650 0.94488 0.91760 0.94551 0.91224 0.90020 0.92362 0.94620 0.89446 0.92058 0.87919 0.87862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.02 10.24 71.24 0.73 -0.29 16 2 C 0.20 4.58 7.94 138.24 1.10 5.68 16 3 N -0.53 -14.54 11.27 -188.76 -2.13 -16.66 16 4 C -0.04 -1.08 11.84 83.30 0.99 -0.09 16 5 C -0.03 -0.67 6.57 40.73 0.27 -0.40 16 6 N -0.45 -10.06 3.13 -499.79 -1.57 -11.62 16 7 C 0.13 2.61 5.30 86.54 0.46 3.07 16 8 C -0.11 -2.16 2.53 -11.34 -0.03 -2.19 16 9 H 0.13 2.09 8.11 -2.38 -0.02 2.07 16 10 C 0.52 13.97 7.15 87.66 0.63 14.59 16 11 O -0.58 -18.89 15.48 -3.03 -0.05 -18.93 16 12 N -0.70 -19.70 4.89 -434.91 -2.13 -21.83 16 13 C 0.14 4.49 2.80 46.61 0.13 4.62 16 14 H 0.09 2.78 7.23 -2.39 -0.02 2.76 16 15 C -0.13 -4.92 6.23 32.22 0.20 -4.72 16 16 C 0.14 6.02 4.72 46.23 0.22 6.24 16 17 H 0.11 5.91 5.52 -2.39 -0.01 5.90 16 18 C -0.13 -4.90 6.44 32.21 0.21 -4.69 16 19 C -0.12 -3.77 6.44 32.21 0.21 -3.56 16 20 C 0.13 4.29 5.06 46.23 0.23 4.52 16 21 H 0.10 3.18 8.14 -2.39 -0.02 3.16 16 22 N -0.61 -26.59 2.98 -615.25 -1.84 -28.42 16 23 C -0.21 -10.33 10.59 84.03 0.89 -9.44 16 24 H 0.09 3.96 7.83 -2.91 -0.02 3.94 16 25 C -0.06 -3.36 5.50 84.86 0.47 -2.89 16 26 N -0.95 -52.55 10.47 21.65 0.23 -52.32 16 27 Si 0.97 42.51 29.55 68.60 2.03 44.53 16 28 H -0.29 -12.38 7.11 99.48 0.71 -11.67 16 29 H -0.31 -13.97 7.11 99.48 0.71 -13.26 16 30 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 31 C -0.11 -2.26 5.23 30.81 0.16 -2.10 16 32 C -0.04 -0.62 6.31 30.03 0.19 -0.43 16 33 H 0.09 1.15 8.14 -2.39 -0.02 1.14 16 34 H 0.09 1.09 7.95 -2.39 -0.02 1.07 16 35 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.18 3.55 8.06 -2.91 -0.02 3.52 16 37 H 0.09 1.95 7.83 -2.39 -0.02 1.93 16 38 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.41 11.09 7.99 -92.71 -0.74 10.35 16 40 H 0.04 1.52 7.98 -2.39 -0.02 1.50 16 41 H 0.06 2.24 7.81 -2.39 -0.02 2.22 16 42 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.07 2.22 7.82 -2.39 -0.02 2.20 16 44 H 0.08 2.12 7.82 -2.39 -0.02 2.11 16 45 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 46 H 0.24 13.46 8.31 -92.71 -0.77 12.69 16 47 H 0.09 1.81 7.31 -2.39 -0.02 1.79 16 48 H 0.06 1.39 8.12 -2.39 -0.02 1.37 16 49 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 50 H 0.10 1.57 8.14 -2.38 -0.02 1.55 16 Total: -1.00 -65.58 390.81 1.80 -63.78 By element: Atomic # 1 Polarization: 33.36 SS G_CDS: 0.21 Total: 33.57 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: 7.04 Total: 7.92 kcal Atomic # 7 Polarization: -123.43 SS G_CDS: -7.43 Total: -130.86 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: -0.05 Total: -18.93 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.53 kcal Total: -65.58 1.80 -63.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097726376.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.632 kcal (2) G-P(sol) polarization free energy of solvation -65.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds