Wall clock time and date at job start Wed Apr 1 2020 02:58:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30787 * 125.72638 * 2 1 4 4 C 1.34426 * 109.32231 * 180.02562 * 3 2 1 5 5 C 1.33866 * 107.79839 * 0.02562 * 4 3 2 6 6 N 1.34409 * 125.72220 * 180.02562 * 2 1 3 7 7 C 1.46466 * 128.44319 * 359.76014 * 6 2 1 8 8 C 1.53279 * 108.69573 * 197.36286 * 7 6 2 9 9 C 1.53113 * 109.70686 * 309.23573 * 8 7 6 10 10 H 1.09005 * 109.52323 * 309.93641 * 9 8 7 11 11 C 1.50699 * 109.49754 * 189.86268 * 9 8 7 12 12 O 1.21284 * 120.00104 * 0.15113 * 11 9 8 13 13 N 1.34780 * 119.99880 * 180.16298 * 11 9 8 14 14 C 1.46504 * 119.99778 * 179.97438 * 13 11 9 15 15 H 1.08998 * 110.68533 * 36.53534 * 14 13 11 16 16 C 1.54853 * 110.62717 * 273.54534 * 14 13 11 17 17 C 1.55846 * 103.58572 * 241.59295 * 16 14 13 18 18 H 1.09001 * 115.56054 * 158.74016 * 17 16 14 19 19 C 1.55851 * 105.06251 * 288.09277 * 17 16 14 20 20 C 1.55872 * 103.52504 * 72.42999 * 19 17 16 21 21 C 1.55844 * 102.97491 * 359.12172 * 20 19 17 22 22 H 1.09003 * 115.56039 * 159.68620 * 21 20 19 23 23 N 1.50231 * 101.05347 * 32.85762 * 17 16 14 24 24 C 1.36937 * 130.84174 * 126.01113 * 23 17 16 25 25 H 1.07998 * 120.00341 * 180.02562 * 24 23 17 26 26 C 1.38817 * 119.99764 * 0.02764 * 24 23 17 27 27 N 1.31622 * 120.00031 * 359.97438 * 26 24 23 28 28 Si 1.86792 * 120.00215 * 180.02562 * 26 24 23 29 29 H 1.48499 * 109.47525 * 59.99375 * 28 26 24 30 30 H 1.48493 * 109.47399 * 179.97438 * 28 26 24 31 31 H 1.48504 * 109.46855 * 299.99826 * 28 26 24 32 32 C 1.50710 * 128.68310 * 179.90458 * 5 4 3 33 33 H 1.08994 * 109.47409 * 90.01308 * 1 2 3 34 34 H 1.08994 * 109.47149 * 210.02209 * 1 2 3 35 35 H 1.09007 * 109.46737 * 330.01913 * 1 2 3 36 36 H 1.07999 * 126.09949 * 180.02562 * 4 3 2 37 37 H 1.08995 * 109.60306 * 317.13494 * 7 6 2 38 38 H 1.09004 * 109.60087 * 77.44562 * 7 6 2 39 39 H 1.09000 * 109.43326 * 189.15782 * 8 7 6 40 40 H 1.09004 * 109.42472 * 69.30228 * 8 7 6 41 41 H 0.96996 * 119.99867 * 359.97438 * 13 11 9 42 42 H 1.09002 * 110.62731 * 123.02152 * 16 14 13 43 43 H 1.08994 * 110.62900 * 0.15998 * 16 14 13 44 44 H 1.09000 * 110.62497 * 190.31394 * 19 17 16 45 45 H 1.08999 * 110.62904 * 313.34170 * 19 17 16 46 46 H 1.08998 * 110.09990 * 241.13352 * 20 19 17 47 47 H 1.09005 * 111.60162 * 117.81025 * 20 19 17 48 48 H 0.96990 * 120.00410 * 180.02562 * 27 26 24 49 49 H 1.09002 * 109.74313 * 76.04789 * 32 5 4 50 50 H 1.08996 * 109.78122 * 315.35690 * 32 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2707 1.0617 0.0000 4 6 3.5602 0.6821 -0.0006 5 6 3.5928 -0.6561 -0.0015 6 7 2.2918 -1.0912 -0.0005 7 6 1.8921 -2.5003 0.0037 8 6 3.0927 -3.3502 0.4346 9 6 4.3183 -2.9746 -0.4028 10 1 4.0542 -2.9856 -1.4603 11 6 5.4235 -3.9675 -0.1501 12 8 5.2482 -4.8869 0.6212 13 7 6.6069 -3.8335 -0.7811 14 6 7.6815 -4.7984 -0.5351 15 1 7.2758 -5.8016 -0.4045 16 6 8.5159 -4.3822 0.7012 17 6 9.9447 -4.1589 0.1203 18 1 10.6021 -3.5276 0.7182 19 6 10.4763 -5.5867 -0.2076 20 6 9.6523 -6.0030 -1.4634 21 6 8.7251 -4.7724 -1.6973 22 1 8.3084 -4.6814 -2.7004 23 7 9.6200 -3.6495 -1.2552 24 6 10.0171 -2.5118 -1.9057 25 1 9.6717 -2.3155 -2.9100 26 6 10.8635 -1.6108 -1.2742 27 7 11.2841 -1.8498 -0.0501 28 14 11.4046 -0.0585 -2.1612 29 1 10.2115 0.7540 -2.5098 30 1 12.2991 0.7307 -1.2768 31 1 12.1330 -0.4258 -3.4021 32 6 4.7918 -1.5692 -0.0044 33 1 -0.3634 -0.0002 -1.0276 34 1 -0.3633 -0.8897 0.5141 35 1 -0.3633 0.8902 0.5136 36 1 4.4171 1.3395 -0.0003 37 1 1.0707 -2.6453 0.7053 38 1 1.5742 -2.7932 -0.9970 39 1 2.8619 -4.4052 0.2868 40 1 3.3046 -3.1703 1.4886 41 1 6.7471 -3.0983 -1.3981 42 1 8.5239 -5.1789 1.4450 43 1 8.1285 -3.4594 1.1330 44 1 11.5383 -5.5546 -0.4508 45 1 10.2924 -6.2656 0.6251 46 1 9.0617 -6.8929 -1.2458 47 1 10.2949 -6.1694 -2.3280 48 1 11.8752 -1.2201 0.3913 49 1 5.2365 -1.5961 0.9904 50 1 5.5260 -1.2116 -0.7262 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001097846244.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:16 Heat of formation + Delta-G solvation = 59.742826 kcal Electronic energy + Delta-G solvation = -31120.869868 eV Core-core repulsion = 27149.643872 eV Total energy + Delta-G solvation = -3971.225996 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.48008 -39.99369 -38.65500 -36.28093 -33.99071 -33.42711 -32.53145 -31.36321 -29.91572 -29.13155 -28.89070 -27.91961 -26.57846 -24.43461 -24.23303 -23.06846 -21.25777 -20.77090 -19.94204 -19.74824 -19.04089 -18.68179 -17.07268 -16.90626 -16.84836 -16.11503 -15.77135 -15.11510 -14.85132 -14.34756 -14.19573 -14.17741 -13.99645 -13.74982 -13.56305 -13.50406 -13.17228 -13.03550 -12.89780 -12.56731 -12.12307 -12.01887 -11.91365 -11.84817 -11.34159 -11.28496 -11.19111 -11.13286 -10.97373 -10.90536 -10.54479 -10.41008 -10.14593 -10.07137 -9.94353 -9.69203 -9.59881 -9.28125 -9.17721 -8.99964 -8.52705 -8.24712 -6.99163 -5.78097 -3.17564 1.94705 2.61775 2.82490 3.07565 3.34783 3.39698 3.41323 3.44140 4.20907 4.33207 4.37270 4.38781 4.46492 4.63714 4.85129 4.89482 4.96645 5.07379 5.12703 5.24923 5.27972 5.33421 5.35982 5.53082 5.55888 5.57841 5.59921 5.63900 5.78046 5.82652 5.85417 5.92675 6.02240 6.05669 6.10478 6.25591 6.31365 6.37484 6.44936 6.55341 6.69632 6.71817 6.78456 6.90476 7.06230 7.12661 7.28103 7.42659 7.75333 7.90318 8.03361 8.13199 8.51235 9.03292 9.66823 10.47422 11.30721 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.011681 B = 0.003343 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2396.416052 B = 8373.373465 C =10253.891071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.200 3.800 3 N -0.494 5.494 4 C -0.020 4.020 5 C -0.018 4.018 6 N -0.453 5.453 7 C 0.104 3.896 8 C -0.112 4.112 9 C -0.110 4.110 10 H 0.098 0.902 11 C 0.516 3.484 12 O -0.551 6.551 13 N -0.701 5.701 14 C 0.129 3.871 15 H 0.077 0.923 16 C -0.142 4.142 17 C 0.154 3.846 18 H 0.153 0.847 19 C -0.139 4.139 20 C -0.127 4.127 21 C 0.125 3.875 22 H 0.086 0.914 23 N -0.590 5.590 24 C -0.217 4.217 25 H 0.077 0.923 26 C -0.008 4.008 27 N -0.919 5.919 28 Si 0.914 3.086 29 H -0.285 1.285 30 H -0.290 1.290 31 H -0.286 1.286 32 C -0.036 4.036 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.088 0.912 36 H 0.171 0.829 37 H 0.092 0.908 38 H 0.085 0.915 39 H 0.097 0.903 40 H 0.080 0.920 41 H 0.403 0.597 42 H 0.052 0.948 43 H 0.058 0.942 44 H 0.054 0.946 45 H 0.049 0.951 46 H 0.050 0.950 47 H 0.058 0.942 48 H 0.255 0.745 49 H 0.089 0.911 50 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.613 -3.487 -0.538 17.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.062 4.062 3 N -0.213 5.213 4 C -0.167 4.167 5 C -0.131 4.131 6 N -0.138 5.138 7 C -0.018 4.018 8 C -0.150 4.150 9 C -0.132 4.132 10 H 0.116 0.884 11 C 0.301 3.699 12 O -0.429 6.429 13 N -0.350 5.350 14 C 0.023 3.977 15 H 0.095 0.905 16 C -0.182 4.182 17 C 0.048 3.952 18 H 0.170 0.830 19 C -0.178 4.178 20 C -0.167 4.167 21 C 0.016 3.984 22 H 0.104 0.896 23 N -0.311 5.311 24 C -0.345 4.345 25 H 0.095 0.905 26 C -0.204 4.204 27 N -0.566 5.566 28 Si 0.745 3.255 29 H -0.212 1.212 30 H -0.216 1.216 31 H -0.213 1.213 32 C -0.075 4.075 33 H 0.096 0.904 34 H 0.089 0.911 35 H 0.107 0.893 36 H 0.188 0.812 37 H 0.111 0.889 38 H 0.103 0.897 39 H 0.116 0.884 40 H 0.099 0.901 41 H 0.237 0.763 42 H 0.071 0.929 43 H 0.077 0.923 44 H 0.073 0.927 45 H 0.067 0.933 46 H 0.069 0.931 47 H 0.077 0.923 48 H 0.066 0.934 49 H 0.107 0.893 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -17.885 -3.173 -0.022 18.165 hybrid contribution 0.726 0.284 -0.796 1.114 sum -17.159 -2.889 -0.817 17.420 Atomic orbital electron populations 1.20133 0.85133 1.03763 1.03291 1.23081 0.95522 0.81376 1.06204 1.70444 1.02036 1.28085 1.20765 1.21870 0.94772 0.92018 1.08028 1.21027 0.85244 0.95356 1.11507 1.45282 1.06325 1.07169 1.55010 1.22024 0.98870 0.77813 1.03113 1.21667 0.91888 1.00506 1.00950 1.21423 0.94897 0.94884 1.02016 0.88373 1.20237 0.83332 0.85637 0.80650 1.90669 1.81901 1.34027 1.36318 1.46011 1.12610 1.30800 1.45550 1.22667 0.86317 0.90905 0.97835 0.90517 1.23447 0.99206 0.99753 0.95794 1.23758 0.93032 0.91046 0.87410 0.83007 1.23242 0.99364 0.99287 0.95909 1.23030 0.98429 0.96661 0.98577 1.23209 0.90701 0.89802 0.94663 0.89631 1.46515 1.52411 1.19345 1.12781 1.18937 1.23418 0.94925 0.97207 0.90493 1.24689 1.00106 0.99014 0.96554 1.69442 1.37997 1.36839 1.12351 0.86163 0.78267 0.82698 0.78407 1.21174 1.21589 1.21313 1.20213 0.93222 0.90021 1.04027 0.90353 0.91095 0.89308 0.81155 0.88937 0.89677 0.88413 0.90124 0.76254 0.92936 0.92297 0.92706 0.93266 0.93147 0.92275 0.93441 0.89261 0.88430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.48 10.24 36.01 0.37 -0.11 16 2 C 0.20 2.38 7.94 -155.75 -1.24 1.15 16 3 N -0.49 -7.26 11.27 -11.02 -0.12 -7.38 16 4 C -0.02 -0.28 11.84 -17.95 -0.21 -0.49 16 5 C -0.02 -0.22 6.57 -81.73 -0.54 -0.76 16 6 N -0.45 -5.10 3.13 -109.43 -0.34 -5.44 16 7 C 0.10 0.84 6.67 -3.92 -0.03 0.82 16 8 C -0.11 -1.12 4.66 -26.53 -0.12 -1.24 16 9 C -0.11 -1.26 2.55 -91.42 -0.23 -1.49 16 10 H 0.10 0.99 8.12 -51.93 -0.42 0.57 16 11 C 0.52 7.69 7.13 -10.98 -0.08 7.61 16 12 O -0.55 -9.89 15.54 5.55 0.09 -9.80 16 13 N -0.70 -10.99 5.01 -51.20 -0.26 -11.24 16 14 C 0.13 2.27 2.76 -65.23 -0.18 2.09 16 15 H 0.08 1.36 7.42 -51.93 -0.39 0.97 16 16 C -0.14 -2.78 6.21 -24.23 -0.15 -2.93 16 17 C 0.15 3.39 4.72 -62.80 -0.30 3.09 16 18 H 0.15 3.88 5.52 -51.93 -0.29 3.59 16 19 C -0.14 -2.66 6.47 -23.68 -0.15 -2.82 16 20 C -0.13 -2.22 6.54 -23.68 -0.15 -2.37 16 21 C 0.12 2.31 5.00 -62.59 -0.31 2.00 16 22 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 23 N -0.59 -13.37 2.98 -145.59 -0.43 -13.81 16 24 C -0.22 -5.47 10.59 -15.06 -0.16 -5.63 16 25 H 0.08 1.87 7.83 -52.49 -0.41 1.46 16 26 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 27 N -0.92 -25.14 10.47 55.49 0.58 -24.56 16 28 Si 0.91 20.99 29.55 -169.99 -5.02 15.96 16 29 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 30 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 31 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 32 C -0.04 -0.44 5.44 -27.58 -0.15 -0.59 16 33 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.38 7.59 -51.93 -0.39 -0.01 16 35 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.17 2.16 8.06 -52.49 -0.42 1.73 16 37 H 0.09 0.56 7.72 -51.93 -0.40 0.16 16 38 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.10 0.94 7.77 -51.93 -0.40 0.54 16 40 H 0.08 0.92 8.11 -51.93 -0.42 0.49 16 41 H 0.40 6.11 8.34 -40.82 -0.34 5.77 16 42 H 0.05 0.98 7.82 -51.93 -0.41 0.57 16 43 H 0.06 1.25 7.98 -51.93 -0.41 0.84 16 44 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 45 H 0.05 0.85 7.82 -51.93 -0.41 0.44 16 46 H 0.05 0.77 7.86 -51.93 -0.41 0.36 16 47 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 48 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 49 H 0.09 1.17 8.11 -51.93 -0.42 0.75 16 50 H 0.10 1.16 7.94 -51.93 -0.41 0.75 16 LS Contribution 391.26 15.07 5.90 5.90 Total: -1.00 -31.29 391.26 -11.38 -42.67 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: -8.03 Total: 9.69 kcal Atomic # 6 Polarization: 1.75 SS G_CDS: -3.73 Total: -1.98 kcal Atomic # 7 Polarization: -61.86 SS G_CDS: -0.58 Total: -62.44 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: 0.09 Total: -9.80 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.29 -11.38 -42.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097846244.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.411 kcal (2) G-P(sol) polarization free energy of solvation -31.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.668 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds