Wall clock time and date at job start Wed Apr 1 2020 02:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30787 * 125.72638 * 2 1 4 4 C 1.34426 * 109.32231 * 180.02562 * 3 2 1 5 5 C 1.33866 * 107.79839 * 0.02562 * 4 3 2 6 6 N 1.34409 * 125.72220 * 180.02562 * 2 1 3 7 7 C 1.46466 * 128.44319 * 359.76014 * 6 2 1 8 8 C 1.53279 * 108.69573 * 197.36286 * 7 6 2 9 9 C 1.53113 * 109.70686 * 309.23573 * 8 7 6 10 10 H 1.09005 * 109.52323 * 309.93641 * 9 8 7 11 11 C 1.50699 * 109.49754 * 189.86268 * 9 8 7 12 12 O 1.21284 * 120.00104 * 0.15113 * 11 9 8 13 13 N 1.34780 * 119.99880 * 180.16298 * 11 9 8 14 14 C 1.46504 * 119.99778 * 179.97438 * 13 11 9 15 15 H 1.08998 * 110.68533 * 36.53534 * 14 13 11 16 16 C 1.54853 * 110.62717 * 273.54534 * 14 13 11 17 17 C 1.55846 * 103.58572 * 241.59295 * 16 14 13 18 18 H 1.09001 * 115.56054 * 158.74016 * 17 16 14 19 19 C 1.55851 * 105.06251 * 288.09277 * 17 16 14 20 20 C 1.55872 * 103.52504 * 72.42999 * 19 17 16 21 21 C 1.55844 * 102.97491 * 359.12172 * 20 19 17 22 22 H 1.09003 * 115.56039 * 159.68620 * 21 20 19 23 23 N 1.50231 * 101.05347 * 32.85762 * 17 16 14 24 24 C 1.36937 * 130.84174 * 126.01113 * 23 17 16 25 25 H 1.07998 * 120.00341 * 180.02562 * 24 23 17 26 26 C 1.38817 * 119.99764 * 0.02764 * 24 23 17 27 27 N 1.31622 * 120.00031 * 359.97438 * 26 24 23 28 28 Si 1.86792 * 120.00215 * 180.02562 * 26 24 23 29 29 H 1.48499 * 109.47525 * 59.99375 * 28 26 24 30 30 H 1.48493 * 109.47399 * 179.97438 * 28 26 24 31 31 H 1.48504 * 109.46855 * 299.99826 * 28 26 24 32 32 C 1.50710 * 128.68310 * 179.90458 * 5 4 3 33 33 H 1.08994 * 109.47409 * 90.01308 * 1 2 3 34 34 H 1.08994 * 109.47149 * 210.02209 * 1 2 3 35 35 H 1.09007 * 109.46737 * 330.01913 * 1 2 3 36 36 H 1.07999 * 126.09949 * 180.02562 * 4 3 2 37 37 H 1.08995 * 109.60306 * 317.13494 * 7 6 2 38 38 H 1.09004 * 109.60087 * 77.44562 * 7 6 2 39 39 H 1.09000 * 109.43326 * 189.15782 * 8 7 6 40 40 H 1.09004 * 109.42472 * 69.30228 * 8 7 6 41 41 H 0.96996 * 119.99867 * 359.97438 * 13 11 9 42 42 H 1.09002 * 110.62731 * 123.02152 * 16 14 13 43 43 H 1.08994 * 110.62900 * 0.15998 * 16 14 13 44 44 H 1.09000 * 110.62497 * 190.31394 * 19 17 16 45 45 H 1.08999 * 110.62904 * 313.34170 * 19 17 16 46 46 H 1.08998 * 110.09990 * 241.13352 * 20 19 17 47 47 H 1.09005 * 111.60162 * 117.81025 * 20 19 17 48 48 H 0.96990 * 120.00410 * 180.02562 * 27 26 24 49 49 H 1.09002 * 109.74313 * 76.04789 * 32 5 4 50 50 H 1.08996 * 109.78122 * 315.35690 * 32 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2707 1.0617 0.0000 4 6 3.5602 0.6821 -0.0006 5 6 3.5928 -0.6561 -0.0015 6 7 2.2918 -1.0912 -0.0005 7 6 1.8921 -2.5003 0.0037 8 6 3.0927 -3.3502 0.4346 9 6 4.3183 -2.9746 -0.4028 10 1 4.0542 -2.9856 -1.4603 11 6 5.4235 -3.9675 -0.1501 12 8 5.2482 -4.8869 0.6212 13 7 6.6069 -3.8335 -0.7811 14 6 7.6815 -4.7984 -0.5351 15 1 7.2758 -5.8016 -0.4045 16 6 8.5159 -4.3822 0.7012 17 6 9.9447 -4.1589 0.1203 18 1 10.6021 -3.5276 0.7182 19 6 10.4763 -5.5867 -0.2076 20 6 9.6523 -6.0030 -1.4634 21 6 8.7251 -4.7724 -1.6973 22 1 8.3084 -4.6814 -2.7004 23 7 9.6200 -3.6495 -1.2552 24 6 10.0171 -2.5118 -1.9057 25 1 9.6717 -2.3155 -2.9100 26 6 10.8635 -1.6108 -1.2742 27 7 11.2841 -1.8498 -0.0501 28 14 11.4046 -0.0585 -2.1612 29 1 10.2115 0.7540 -2.5098 30 1 12.2991 0.7307 -1.2768 31 1 12.1330 -0.4258 -3.4021 32 6 4.7918 -1.5692 -0.0044 33 1 -0.3634 -0.0002 -1.0276 34 1 -0.3633 -0.8897 0.5141 35 1 -0.3633 0.8902 0.5136 36 1 4.4171 1.3395 -0.0003 37 1 1.0707 -2.6453 0.7053 38 1 1.5742 -2.7932 -0.9970 39 1 2.8619 -4.4052 0.2868 40 1 3.3046 -3.1703 1.4886 41 1 6.7471 -3.0983 -1.3981 42 1 8.5239 -5.1789 1.4450 43 1 8.1285 -3.4594 1.1330 44 1 11.5383 -5.5546 -0.4508 45 1 10.2924 -6.2656 0.6251 46 1 9.0617 -6.8929 -1.2458 47 1 10.2949 -6.1694 -2.3280 48 1 11.8752 -1.2201 0.3913 49 1 5.2365 -1.5961 0.9904 50 1 5.5260 -1.2116 -0.7262 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001097846244.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:15 Heat of formation + Delta-G solvation = 42.088337 kcal Electronic energy + Delta-G solvation = -31121.635424 eV Core-core repulsion = 27149.643872 eV Total energy + Delta-G solvation = -3971.991552 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.38809 -41.34423 -40.06859 -37.25495 -35.33793 -34.53952 -34.20036 -32.21213 -30.93307 -30.77486 -30.35874 -29.33792 -27.52887 -26.09133 -25.31782 -24.12412 -22.58519 -21.64935 -21.51441 -21.06524 -20.28672 -19.90824 -18.82121 -18.08404 -17.74443 -17.22958 -16.87232 -16.71823 -16.20735 -15.81444 -15.52186 -15.22146 -14.99593 -14.91439 -14.67255 -14.61363 -14.38363 -13.95860 -13.77510 -13.69595 -13.59566 -13.14670 -12.89682 -12.87788 -12.82932 -12.78615 -12.77496 -12.62162 -12.20240 -12.09151 -12.06330 -11.97511 -11.88763 -11.67104 -11.23069 -11.01170 -10.92007 -10.87696 -10.58146 -10.47083 -9.92242 -9.20457 -8.84872 -7.73878 -5.13232 1.03573 1.51033 1.51456 1.57390 1.61964 1.81620 2.09337 2.26289 2.51931 3.34306 3.39673 3.47029 3.52629 3.56705 3.60131 3.76682 3.98089 4.03727 4.10421 4.14167 4.24907 4.28470 4.31641 4.44635 4.48217 4.51002 4.55554 4.63624 4.65535 4.70092 4.74528 4.76452 4.84717 4.85854 4.92926 4.94947 5.07695 5.08929 5.10592 5.18822 5.20584 5.38635 5.39924 5.53874 5.62248 5.73215 5.74671 5.91857 6.29529 6.31247 6.64609 7.07917 7.09821 7.27682 7.75269 8.60753 9.33138 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.011681 B = 0.003343 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2396.416052 B = 8373.373465 C =10253.891071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.202 3.798 3 N -0.535 5.535 4 C -0.046 4.046 5 C -0.023 4.023 6 N -0.452 5.452 7 C 0.104 3.896 8 C -0.108 4.108 9 C -0.099 4.099 10 H 0.121 0.879 11 C 0.519 3.481 12 O -0.579 6.579 13 N -0.702 5.702 14 C 0.142 3.858 15 H 0.087 0.913 16 C -0.132 4.132 17 C 0.140 3.860 18 H 0.113 0.887 19 C -0.133 4.133 20 C -0.118 4.118 21 C 0.127 3.873 22 H 0.103 0.897 23 N -0.609 5.609 24 C -0.212 4.212 25 H 0.086 0.914 26 C -0.065 4.065 27 N -0.947 5.947 28 Si 0.969 3.031 29 H -0.278 1.278 30 H -0.303 1.303 31 H -0.283 1.283 32 C -0.029 4.029 33 H 0.094 0.906 34 H 0.098 0.902 35 H 0.089 0.911 36 H 0.169 0.831 37 H 0.121 0.879 38 H 0.111 0.889 39 H 0.106 0.894 40 H 0.062 0.938 41 H 0.406 0.594 42 H 0.062 0.938 43 H 0.032 0.968 44 H 0.035 0.965 45 H 0.070 0.930 46 H 0.081 0.919 47 H 0.060 0.940 48 H 0.244 0.756 49 H 0.071 0.929 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.526 -5.195 -2.032 21.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.060 4.060 3 N -0.256 5.256 4 C -0.193 4.193 5 C -0.138 4.138 6 N -0.136 5.136 7 C -0.017 4.017 8 C -0.146 4.146 9 C -0.121 4.121 10 H 0.138 0.862 11 C 0.306 3.694 12 O -0.459 6.459 13 N -0.350 5.350 14 C 0.035 3.965 15 H 0.105 0.895 16 C -0.172 4.172 17 C 0.033 3.967 18 H 0.131 0.869 19 C -0.172 4.172 20 C -0.158 4.158 21 C 0.020 3.980 22 H 0.121 0.879 23 N -0.330 5.330 24 C -0.341 4.341 25 H 0.103 0.897 26 C -0.257 4.257 27 N -0.597 5.597 28 Si 0.799 3.201 29 H -0.205 1.205 30 H -0.230 1.230 31 H -0.209 1.209 32 C -0.068 4.068 33 H 0.113 0.887 34 H 0.117 0.883 35 H 0.107 0.893 36 H 0.186 0.814 37 H 0.139 0.861 38 H 0.129 0.871 39 H 0.125 0.875 40 H 0.081 0.919 41 H 0.241 0.759 42 H 0.081 0.919 43 H 0.051 0.949 44 H 0.054 0.946 45 H 0.089 0.911 46 H 0.100 0.900 47 H 0.079 0.921 48 H 0.054 0.946 49 H 0.090 0.910 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -20.830 -4.914 -1.541 21.457 hybrid contribution 1.594 0.774 -0.295 1.796 sum -19.236 -4.141 -1.835 19.762 Atomic orbital electron populations 1.20343 0.81944 1.05165 1.04744 1.23904 0.97171 0.80860 1.04080 1.70414 1.02462 1.29950 1.22766 1.22031 0.95079 0.92928 1.09250 1.20976 0.86186 0.94956 1.11692 1.45480 1.05491 1.08401 1.54252 1.22299 0.98504 0.75426 1.05432 1.21630 0.91934 1.01435 0.99564 1.21394 0.94121 0.92918 1.03644 0.86154 1.20764 0.83508 0.85626 0.79539 1.90655 1.82408 1.35468 1.37385 1.45993 1.12589 1.30623 1.45825 1.22436 0.86338 0.91661 0.96075 0.89543 1.23299 0.98149 0.98882 0.96893 1.23572 0.93830 0.92081 0.87224 0.86931 1.23144 0.98452 0.97876 0.97723 1.22987 0.98102 0.97182 0.97527 1.23425 0.90321 0.88609 0.95672 0.87935 1.46686 1.53274 1.19823 1.13218 1.19293 1.22004 0.95417 0.97395 0.89656 1.25366 1.01332 1.01727 0.97309 1.69705 1.39054 1.37319 1.13652 0.85275 0.77689 0.79949 0.77146 1.20467 1.22972 1.20932 1.20083 0.93104 0.90626 1.02977 0.88737 0.88342 0.89270 0.81404 0.86123 0.87083 0.87528 0.91939 0.75897 0.91921 0.94891 0.94591 0.91135 0.90034 0.92093 0.94622 0.91045 0.88671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.75 10.24 71.24 0.73 -0.02 16 2 C 0.20 4.44 7.94 138.25 1.10 5.54 16 3 N -0.54 -15.62 11.27 -188.77 -2.13 -17.74 16 4 C -0.05 -1.33 11.84 83.30 0.99 -0.34 16 5 C -0.02 -0.58 6.57 40.73 0.27 -0.32 16 6 N -0.45 -9.18 3.13 -500.14 -1.57 -10.75 16 7 C 0.10 1.29 6.67 86.48 0.58 1.87 16 8 C -0.11 -1.87 4.66 30.73 0.14 -1.73 16 9 C -0.10 -2.07 2.55 -11.31 -0.03 -2.10 16 10 H 0.12 2.04 8.12 -2.38 -0.02 2.02 16 11 C 0.52 14.66 7.13 87.66 0.62 15.29 16 12 O -0.58 -19.89 15.54 -3.04 -0.05 -19.94 16 13 N -0.70 -21.04 5.01 -434.27 -2.17 -23.21 16 14 C 0.14 4.74 2.76 46.74 0.13 4.87 16 15 H 0.09 2.80 7.42 -2.39 -0.02 2.79 16 16 C -0.13 -5.17 6.21 32.21 0.20 -4.97 16 17 C 0.14 6.23 4.72 46.23 0.22 6.45 16 18 H 0.11 6.04 5.52 -2.39 -0.01 6.03 16 19 C -0.13 -4.98 6.47 32.57 0.21 -4.77 16 20 C -0.12 -3.82 6.54 32.57 0.21 -3.61 16 21 C 0.13 4.43 5.00 46.36 0.23 4.66 16 22 H 0.10 3.25 8.14 -2.39 -0.02 3.23 16 23 N -0.61 -27.48 2.98 -614.54 -1.83 -29.31 16 24 C -0.21 -10.72 10.59 84.03 0.89 -9.83 16 25 H 0.09 4.06 7.83 -2.91 -0.02 4.04 16 26 C -0.06 -3.45 5.50 84.86 0.47 -2.98 16 27 N -0.95 -54.03 10.47 21.65 0.23 -53.80 16 28 Si 0.97 44.01 29.55 68.60 2.03 46.04 16 29 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 30 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 31 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 32 C -0.03 -0.70 5.44 30.04 0.16 -0.53 16 33 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.10 0.61 7.59 -2.39 -0.02 0.59 16 35 H 0.09 1.06 8.14 -2.38 -0.02 1.05 16 36 H 0.17 4.56 8.06 -2.91 -0.02 4.53 16 37 H 0.12 0.89 7.72 -2.39 -0.02 0.87 16 38 H 0.11 0.90 8.14 -2.38 -0.02 0.88 16 39 H 0.11 1.72 7.77 -2.39 -0.02 1.71 16 40 H 0.06 1.33 8.11 -2.38 -0.02 1.31 16 41 H 0.41 11.81 8.34 -92.71 -0.77 11.04 16 42 H 0.06 2.29 7.82 -2.39 -0.02 2.27 16 43 H 0.03 1.43 7.98 -2.39 -0.02 1.41 16 44 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 45 H 0.07 2.31 7.82 -2.39 -0.02 2.30 16 46 H 0.08 2.17 7.86 -2.39 -0.02 2.15 16 47 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 48 H 0.24 13.86 8.31 -92.72 -0.77 13.09 16 49 H 0.07 1.95 8.11 -2.39 -0.02 1.93 16 50 H 0.09 2.28 7.94 -2.39 -0.02 2.27 16 Total: -1.00 -70.18 391.26 1.80 -68.38 By element: Atomic # 1 Polarization: 32.69 SS G_CDS: 0.18 Total: 32.86 kcal Atomic # 6 Polarization: 0.36 SS G_CDS: 7.12 Total: 7.48 kcal Atomic # 7 Polarization: -127.35 SS G_CDS: -7.47 Total: -134.82 kcal Atomic # 8 Polarization: -19.89 SS G_CDS: -0.05 Total: -19.94 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -70.18 1.80 -68.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097846244.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.468 kcal (2) G-P(sol) polarization free energy of solvation -70.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds