Wall clock time and date at job start Wed Apr 1 2020 03:34:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50694 * 109.47390 * 2 1 4 4 C 1.38550 * 120.01917 * 125.25533 * 3 2 1 5 5 C 1.40079 * 117.81836 * 180.24050 * 4 3 2 6 6 C 1.48129 * 121.14308 * 179.78610 * 5 4 3 7 7 O 1.21519 * 120.00027 * 174.63828 * 6 5 4 8 8 N 1.34775 * 120.00503 * 354.63625 * 6 5 4 9 9 C 1.46499 * 120.00349 * 179.97438 * 8 6 5 10 10 C 1.56375 * 112.71164 * 298.49234 * 9 8 6 11 11 C 1.54829 * 104.39638 * 262.02793 * 10 9 8 12 12 C 1.54839 * 102.73389 * 321.30027 * 11 10 9 13 13 C 1.54137 * 104.34763 * 38.22640 * 12 11 10 14 14 H 1.09000 * 111.89540 * 99.85839 * 13 12 11 15 15 C 1.54468 * 108.79372 * 224.04761 * 13 12 11 16 16 N 1.48346 * 104.42002 * 139.46199 * 15 13 12 17 17 C 1.36932 * 128.19979 * 138.27138 * 16 15 13 18 18 H 1.07994 * 120.00172 * 336.00163 * 17 16 15 19 19 C 1.38815 * 119.99815 * 155.99917 * 17 16 15 20 20 N 1.31620 * 119.99909 * 165.57742 * 19 17 16 21 21 Si 1.86801 * 120.00131 * 345.57241 * 19 17 16 22 22 H 1.48498 * 109.46856 * 84.86992 * 21 19 17 23 23 H 1.48495 * 109.47318 * 204.86933 * 21 19 17 24 24 H 1.48503 * 109.46897 * 324.87038 * 21 19 17 25 25 C 1.48453 * 103.54794 * 318.39964 * 16 15 13 26 26 C 1.39764 * 117.70731 * 359.51305 * 5 4 3 27 27 C 1.50699 * 120.17407 * 180.27229 * 26 5 4 28 28 N 1.31903 * 119.65496 * 0.25123 * 26 5 4 29 29 N 1.28273 * 122.32955 * 359.97438 * 28 26 5 30 30 H 1.08998 * 109.47727 * 300.00420 * 1 2 3 31 31 H 1.09014 * 109.46764 * 60.00341 * 1 2 3 32 32 H 1.08999 * 109.47466 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47727 * 239.99580 * 2 1 3 34 34 H 1.08997 * 109.46839 * 119.99880 * 2 1 3 35 35 H 1.07993 * 121.09212 * 0.02562 * 4 3 2 36 36 H 0.97003 * 119.99522 * 0.02562 * 8 6 5 37 37 H 1.08994 * 110.83616 * 143.08983 * 10 9 8 38 38 H 1.09001 * 110.02765 * 20.56057 * 10 9 8 39 39 H 1.09003 * 110.76126 * 202.98627 * 11 10 9 40 40 H 1.09000 * 110.76425 * 79.60670 * 11 10 9 41 41 H 1.09000 * 110.45517 * 279.50884 * 12 11 10 42 42 H 1.09005 * 110.45778 * 156.94726 * 12 11 10 43 43 H 1.08999 * 110.46216 * 258.22651 * 15 13 12 44 44 H 1.08997 * 110.46814 * 20.69010 * 15 13 12 45 45 H 0.96994 * 120.00081 * 179.97438 * 20 19 17 46 46 H 1.09005 * 110.34697 * 282.89406 * 25 16 15 47 47 H 1.09001 * 110.60727 * 160.42284 * 25 16 15 48 48 H 1.09005 * 109.47089 * 84.13602 * 27 26 5 49 49 H 1.08994 * 109.47323 * 204.13778 * 27 26 5 50 50 H 1.09003 * 109.46968 * 324.14245 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.9163 1.8434 0.9796 5 6 3.3497 3.1748 0.9387 6 6 4.2906 3.7057 1.9521 7 8 4.7290 4.8337 1.8423 8 7 4.6605 2.9378 2.9961 9 6 5.5915 3.4626 3.9981 10 6 6.9864 3.8282 3.3932 11 6 7.8760 2.6005 3.7075 12 6 7.4131 2.1988 5.1295 13 6 5.8888 2.4272 5.1137 14 1 5.3400 1.4973 4.9647 15 6 5.4783 3.1358 6.4234 16 7 4.4668 4.1355 6.0012 17 6 3.2908 4.4639 6.6209 18 1 2.8102 3.7543 7.2780 19 6 2.7163 5.7089 6.4045 20 7 1.4676 5.9280 6.7582 21 14 3.7156 7.0735 5.6115 22 1 3.6491 6.9411 4.1339 23 1 3.1625 8.3911 6.0157 24 1 5.1294 6.9732 6.0544 25 6 5.0311 4.6924 4.7462 26 6 2.8682 3.9834 -0.0946 27 6 3.3030 5.4228 -0.1953 28 7 2.0316 3.4801 -0.9815 29 7 1.6351 2.2610 -0.9358 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8932 -0.5138 0.8900 35 1 3.2572 1.1694 1.7515 36 1 4.3108 2.0372 3.0836 37 1 7.3913 4.7231 3.8655 38 1 6.9004 3.9706 2.3159 39 1 8.9303 2.8774 3.7082 40 1 7.6875 1.7949 2.9980 41 1 7.8860 2.8347 5.8779 42 1 7.6393 1.1499 5.3216 43 1 5.0406 2.4224 7.1217 44 1 6.3382 3.6309 6.8747 45 1 1.0663 6.7980 6.6073 46 1 5.8305 5.3988 4.9707 47 1 4.2519 5.1750 4.1562 48 1 4.2567 5.4784 -0.7204 49 1 2.5525 5.9916 -0.7441 50 1 3.4146 5.8395 0.8057 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098958302.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:34:28 Heat of formation + Delta-G solvation = 47.532696 kcal Electronic energy + Delta-G solvation = -31769.204509 eV Core-core repulsion = 27797.449042 eV Total energy + Delta-G solvation = -3971.755467 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.50380 -40.23543 -38.37220 -35.43184 -34.67278 -34.02116 -33.39824 -31.85264 -31.57715 -29.67427 -28.42086 -27.72686 -25.97108 -25.26484 -24.37250 -23.59257 -22.72418 -21.56927 -20.44732 -19.90220 -19.28278 -17.67201 -17.55277 -16.86939 -16.15862 -15.78673 -15.73185 -15.36203 -15.18750 -14.83390 -14.53469 -14.38634 -14.08299 -13.96385 -13.40718 -13.23227 -13.15841 -12.97534 -12.93472 -12.44156 -12.19609 -12.07073 -12.01834 -11.83103 -11.50841 -11.46154 -11.37386 -11.13551 -10.96107 -10.91281 -10.76456 -10.54516 -10.35984 -10.27925 -10.22543 -10.15411 -10.06116 -9.60063 -9.52078 -9.33623 -8.91953 -8.68027 -7.10751 -5.97769 -3.35628 0.23325 0.71457 2.76359 3.03354 3.39192 3.48021 3.48359 3.50830 3.76059 4.07583 4.24271 4.42995 4.45055 4.52596 4.63235 4.66391 4.83763 4.91614 4.94265 5.01381 5.11152 5.31228 5.31772 5.34609 5.45310 5.48232 5.51207 5.57395 5.62058 5.63999 5.71633 5.75306 5.79319 5.80096 5.85257 5.92642 6.00218 6.03096 6.09277 6.11217 6.24244 6.32817 6.38696 6.40832 6.47417 6.59278 6.66390 6.87643 7.49711 7.60451 8.20544 8.27683 8.56041 8.72356 9.61992 10.17941 11.18214 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.009478 B = 0.004352 C = 0.003862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2953.621429 B = 6432.148285 C = 7247.688973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.066 4.066 3 C 0.057 3.943 4 C -0.080 4.080 5 C -0.123 4.123 6 C 0.560 3.440 7 O -0.511 6.511 8 N -0.690 5.690 9 C 0.159 3.841 10 C -0.120 4.120 11 C -0.123 4.123 12 C -0.115 4.115 13 C -0.107 4.107 14 H 0.080 0.920 15 C 0.130 3.870 16 N -0.608 5.608 17 C -0.238 4.238 18 H 0.092 0.908 19 C 0.025 3.975 20 N -0.913 5.913 21 Si 0.881 3.119 22 H -0.278 1.278 23 H -0.302 1.302 24 H -0.272 1.272 25 C 0.105 3.895 26 C 0.119 3.881 27 C -0.107 4.107 28 N -0.243 5.243 29 N -0.223 5.223 30 H 0.056 0.944 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.152 0.848 36 H 0.397 0.603 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.072 0.928 42 H 0.064 0.936 43 H 0.057 0.943 44 H 0.034 0.966 45 H 0.264 0.736 46 H 0.043 0.957 47 H 0.076 0.924 48 H 0.086 0.914 49 H 0.075 0.925 50 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.310 -12.975 -11.686 19.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.105 4.105 3 C -0.087 4.087 4 C -0.110 4.110 5 C -0.137 4.137 6 C 0.345 3.655 7 O -0.388 6.388 8 N -0.340 5.340 9 C 0.072 3.928 10 C -0.159 4.159 11 C -0.161 4.161 12 C -0.153 4.153 13 C -0.127 4.127 14 H 0.099 0.901 15 C 0.004 3.996 16 N -0.332 5.332 17 C -0.365 4.365 18 H 0.109 0.891 19 C -0.174 4.174 20 N -0.557 5.557 21 Si 0.711 3.289 22 H -0.205 1.205 23 H -0.230 1.230 24 H -0.197 1.197 25 C -0.021 4.021 26 C -0.025 4.025 27 C -0.165 4.165 28 N -0.085 5.085 29 N -0.066 5.066 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.106 0.894 34 H 0.102 0.898 35 H 0.170 0.830 36 H 0.232 0.768 37 H 0.095 0.905 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.091 0.909 42 H 0.083 0.917 43 H 0.076 0.924 44 H 0.052 0.948 45 H 0.074 0.926 46 H 0.061 0.939 47 H 0.094 0.906 48 H 0.105 0.895 49 H 0.093 0.907 50 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 7.434 -11.722 -12.986 19.008 hybrid contribution 1.033 0.114 0.976 1.426 sum 8.467 -11.608 -12.010 18.727 Atomic orbital electron populations 1.21721 0.93565 1.02189 1.03103 1.20442 0.97497 0.88871 1.03677 1.22818 0.94724 0.98773 0.92410 1.22531 0.94894 0.95232 0.98326 1.21192 0.99938 0.94816 0.97785 1.17791 0.80953 0.85490 0.81227 1.90756 1.54424 1.17630 1.75960 1.45668 1.46893 1.17356 1.24077 1.22278 0.87998 0.96023 0.86513 1.23027 0.93358 0.98080 1.01452 1.22508 0.99051 0.97739 0.96775 1.22440 0.94564 1.01119 0.97215 1.23004 0.95759 0.97602 0.96377 0.90133 1.21950 0.92387 0.92115 0.93164 1.45470 1.20187 1.45294 1.22288 1.18592 0.94551 0.98281 1.25064 0.89052 1.25111 0.96269 0.97101 0.98920 1.69747 1.11546 1.23637 1.50736 0.86944 0.80615 0.81996 0.79301 1.20520 1.22968 1.19705 1.22572 0.97874 0.93354 0.88330 1.23135 0.91274 0.98744 0.89323 1.21008 1.01589 0.87940 1.05993 1.73065 1.08973 1.05301 1.21174 1.72720 1.16992 0.97570 1.19276 0.92492 0.91402 0.91847 0.89449 0.89806 0.83022 0.76779 0.90470 0.91170 0.91671 0.91953 0.90905 0.91699 0.92409 0.94777 0.92627 0.93930 0.90594 0.89517 0.90654 0.87364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.78 37.16 0.36 -0.90 16 2 C -0.07 -0.54 6.35 -27.89 -0.18 -0.72 16 3 C 0.06 0.68 6.25 -82.45 -0.52 0.16 16 4 C -0.08 -0.93 9.29 -38.78 -0.36 -1.29 16 5 C -0.12 -1.79 5.92 -104.58 -0.62 -2.41 16 6 C 0.56 9.09 6.88 -12.20 -0.08 9.01 16 7 O -0.51 -9.59 11.12 5.35 0.06 -9.53 16 8 N -0.69 -10.20 5.26 -45.06 -0.24 -10.44 16 9 C 0.16 2.58 0.93 -128.13 -0.12 2.46 16 10 C -0.12 -1.71 5.75 -23.95 -0.14 -1.85 16 11 C -0.12 -1.35 6.90 -24.80 -0.17 -1.52 16 12 C -0.12 -1.30 6.36 -25.17 -0.16 -1.46 16 13 C -0.11 -1.52 3.67 -88.15 -0.32 -1.84 16 14 H 0.08 1.03 7.74 -51.93 -0.40 0.62 16 15 C 0.13 2.35 6.74 -2.25 -0.02 2.33 16 16 N -0.61 -14.15 3.13 -168.35 -0.53 -14.68 16 17 C -0.24 -6.63 10.79 -15.06 -0.16 -6.79 16 18 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 19 C 0.02 0.73 5.49 -17.43 -0.10 0.63 16 20 N -0.91 -28.32 13.97 55.49 0.78 -27.54 16 21 Si 0.88 23.27 24.57 -169.99 -4.18 19.10 16 22 H -0.28 -7.38 6.41 56.52 0.36 -7.02 16 23 H -0.30 -8.05 7.11 56.52 0.40 -7.65 16 24 H -0.27 -6.98 6.43 56.52 0.36 -6.62 16 25 C 0.11 2.27 3.59 -2.19 -0.01 2.26 16 26 C 0.12 1.84 6.91 -81.99 -0.57 1.27 16 27 C -0.11 -1.54 9.01 36.01 0.32 -1.22 16 28 N -0.24 -3.84 11.42 33.81 0.39 -3.45 16 29 N -0.22 -3.24 11.04 33.58 0.37 -2.87 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.65 7.96 -51.92 -0.41 0.24 16 32 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.08 0.51 7.92 -51.93 -0.41 0.10 16 35 H 0.15 1.24 6.59 -52.49 -0.35 0.90 16 36 H 0.40 4.71 6.54 -40.82 -0.27 4.44 16 37 H 0.08 1.15 7.26 -51.93 -0.38 0.77 16 38 H 0.07 1.04 6.82 -51.93 -0.35 0.68 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.07 0.84 7.19 -51.93 -0.37 0.47 16 42 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 44 H 0.03 0.60 7.21 -51.93 -0.37 0.23 16 45 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 46 H 0.04 0.95 5.97 -51.93 -0.31 0.64 16 47 H 0.08 1.88 4.08 -51.93 -0.21 1.67 16 48 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 49 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 50 H 0.11 1.81 5.87 -51.93 -0.30 1.50 16 LS Contribution 381.87 15.07 5.75 5.75 Total: -1.00 -34.02 381.87 -8.01 -42.03 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -7.59 Total: 3.51 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: -2.83 Total: -1.88 kcal Atomic # 7 Polarization: -59.75 SS G_CDS: 0.77 Total: -58.98 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: 0.06 Total: -9.53 kcal Atomic # 14 Polarization: 23.27 SS G_CDS: -4.18 Total: 19.10 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.02 -8.01 -42.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098958302.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.561 kcal (2) G-P(sol) polarization free energy of solvation -34.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds