Wall clock time and date at job start Wed Apr 1 2020 03:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50694 * 109.47390 * 2 1 4 4 C 1.38550 * 120.01917 * 125.25533 * 3 2 1 5 5 C 1.40079 * 117.81836 * 180.24050 * 4 3 2 6 6 C 1.48129 * 121.14308 * 179.78610 * 5 4 3 7 7 O 1.21519 * 120.00027 * 174.63828 * 6 5 4 8 8 N 1.34775 * 120.00503 * 354.63625 * 6 5 4 9 9 C 1.46499 * 120.00349 * 179.97438 * 8 6 5 10 10 C 1.56375 * 112.71164 * 298.49234 * 9 8 6 11 11 C 1.54829 * 104.39638 * 262.02793 * 10 9 8 12 12 C 1.54839 * 102.73389 * 321.30027 * 11 10 9 13 13 C 1.54137 * 104.34763 * 38.22640 * 12 11 10 14 14 H 1.09000 * 111.89540 * 99.85839 * 13 12 11 15 15 C 1.54468 * 108.79372 * 224.04761 * 13 12 11 16 16 N 1.48346 * 104.42002 * 139.46199 * 15 13 12 17 17 C 1.36932 * 128.19979 * 138.27138 * 16 15 13 18 18 H 1.07994 * 120.00172 * 336.00163 * 17 16 15 19 19 C 1.38815 * 119.99815 * 155.99917 * 17 16 15 20 20 N 1.31620 * 119.99909 * 165.57742 * 19 17 16 21 21 Si 1.86801 * 120.00131 * 345.57241 * 19 17 16 22 22 H 1.48498 * 109.46856 * 84.86992 * 21 19 17 23 23 H 1.48495 * 109.47318 * 204.86933 * 21 19 17 24 24 H 1.48503 * 109.46897 * 324.87038 * 21 19 17 25 25 C 1.48453 * 103.54794 * 318.39964 * 16 15 13 26 26 C 1.39764 * 117.70731 * 359.51305 * 5 4 3 27 27 C 1.50699 * 120.17407 * 180.27229 * 26 5 4 28 28 N 1.31903 * 119.65496 * 0.25123 * 26 5 4 29 29 N 1.28273 * 122.32955 * 359.97438 * 28 26 5 30 30 H 1.08998 * 109.47727 * 300.00420 * 1 2 3 31 31 H 1.09014 * 109.46764 * 60.00341 * 1 2 3 32 32 H 1.08999 * 109.47466 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47727 * 239.99580 * 2 1 3 34 34 H 1.08997 * 109.46839 * 119.99880 * 2 1 3 35 35 H 1.07993 * 121.09212 * 0.02562 * 4 3 2 36 36 H 0.97003 * 119.99522 * 0.02562 * 8 6 5 37 37 H 1.08994 * 110.83616 * 143.08983 * 10 9 8 38 38 H 1.09001 * 110.02765 * 20.56057 * 10 9 8 39 39 H 1.09003 * 110.76126 * 202.98627 * 11 10 9 40 40 H 1.09000 * 110.76425 * 79.60670 * 11 10 9 41 41 H 1.09000 * 110.45517 * 279.50884 * 12 11 10 42 42 H 1.09005 * 110.45778 * 156.94726 * 12 11 10 43 43 H 1.08999 * 110.46216 * 258.22651 * 15 13 12 44 44 H 1.08997 * 110.46814 * 20.69010 * 15 13 12 45 45 H 0.96994 * 120.00081 * 179.97438 * 20 19 17 46 46 H 1.09005 * 110.34697 * 282.89406 * 25 16 15 47 47 H 1.09001 * 110.60727 * 160.42284 * 25 16 15 48 48 H 1.09005 * 109.47089 * 84.13602 * 27 26 5 49 49 H 1.08994 * 109.47323 * 204.13778 * 27 26 5 50 50 H 1.09003 * 109.46968 * 324.14245 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.9163 1.8434 0.9796 5 6 3.3497 3.1748 0.9387 6 6 4.2906 3.7057 1.9521 7 8 4.7290 4.8337 1.8423 8 7 4.6605 2.9378 2.9961 9 6 5.5915 3.4626 3.9981 10 6 6.9864 3.8282 3.3932 11 6 7.8760 2.6005 3.7075 12 6 7.4131 2.1988 5.1295 13 6 5.8888 2.4272 5.1137 14 1 5.3400 1.4973 4.9647 15 6 5.4783 3.1358 6.4234 16 7 4.4668 4.1355 6.0012 17 6 3.2908 4.4639 6.6209 18 1 2.8102 3.7543 7.2780 19 6 2.7163 5.7089 6.4045 20 7 1.4676 5.9280 6.7582 21 14 3.7156 7.0735 5.6115 22 1 3.6491 6.9411 4.1339 23 1 3.1625 8.3911 6.0157 24 1 5.1294 6.9732 6.0544 25 6 5.0311 4.6924 4.7462 26 6 2.8682 3.9834 -0.0946 27 6 3.3030 5.4228 -0.1953 28 7 2.0316 3.4801 -0.9815 29 7 1.6351 2.2610 -0.9358 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8932 -0.5138 0.8900 35 1 3.2572 1.1694 1.7515 36 1 4.3108 2.0372 3.0836 37 1 7.3913 4.7231 3.8655 38 1 6.9004 3.9706 2.3159 39 1 8.9303 2.8774 3.7082 40 1 7.6875 1.7949 2.9980 41 1 7.8860 2.8347 5.8779 42 1 7.6393 1.1499 5.3216 43 1 5.0406 2.4224 7.1217 44 1 6.3382 3.6309 6.8747 45 1 1.0663 6.7980 6.6073 46 1 5.8305 5.3988 4.9707 47 1 4.2519 5.1750 4.1562 48 1 4.2567 5.4784 -0.7204 49 1 2.5525 5.9916 -0.7441 50 1 3.4146 5.8395 0.8057 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098958302.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:34:27 Heat of formation + Delta-G solvation = 23.667865 kcal Electronic energy + Delta-G solvation = -31770.239366 eV Core-core repulsion = 27797.449042 eV Total energy + Delta-G solvation = -3972.790324 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.59629 -41.48402 -39.65656 -36.43726 -36.21609 -35.20963 -34.47646 -33.86031 -32.50927 -30.97669 -29.88009 -28.88279 -27.13830 -26.60545 -25.94633 -24.50945 -23.85304 -22.82176 -21.88099 -20.99149 -20.56136 -18.93782 -18.83715 -18.57021 -17.56477 -16.90342 -16.85246 -16.73031 -16.33952 -16.13716 -15.87372 -15.50254 -15.33815 -14.95908 -14.80119 -14.76453 -14.57440 -14.38390 -13.97703 -13.66466 -13.45765 -13.23627 -13.19987 -13.11453 -13.06926 -12.76665 -12.56342 -12.40812 -12.15710 -12.00162 -11.94479 -11.85707 -11.84888 -11.58168 -11.42207 -11.38825 -11.37163 -11.32411 -10.95559 -10.64931 -10.51660 -10.11934 -9.08614 -8.24764 -5.54728 -0.83930 -0.30337 1.23757 1.27757 1.33265 1.56896 1.85127 2.32169 2.40662 2.78402 2.99423 3.07988 3.20039 3.23074 3.36794 3.48600 3.64193 3.68229 3.90585 3.94827 4.07624 4.24219 4.34295 4.36195 4.38001 4.40911 4.51983 4.52605 4.55522 4.58728 4.61102 4.67433 4.78598 4.83386 4.85862 4.98418 5.01568 5.02984 5.04845 5.07205 5.16490 5.20989 5.21477 5.30654 5.31574 5.41119 5.52717 5.54407 5.67387 6.05387 6.35487 6.63802 7.02247 7.44183 7.49884 8.12700 8.95456 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.009478 B = 0.004352 C = 0.003862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2953.621429 B = 6432.148285 C = 7247.688973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.064 4.064 3 C 0.060 3.940 4 C -0.062 4.062 5 C -0.141 4.141 6 C 0.558 3.442 7 O -0.544 6.544 8 N -0.681 5.681 9 C 0.163 3.837 10 C -0.119 4.119 11 C -0.110 4.110 12 C -0.107 4.107 13 C -0.093 4.093 14 H 0.106 0.894 15 C 0.123 3.877 16 N -0.629 5.629 17 C -0.212 4.212 18 H 0.071 0.929 19 C -0.031 4.031 20 N -0.958 5.958 21 Si 0.934 3.066 22 H -0.289 1.289 23 H -0.309 1.309 24 H -0.263 1.263 25 C 0.103 3.897 26 C 0.103 3.897 27 C -0.100 4.100 28 N -0.267 5.267 29 N -0.245 5.245 30 H 0.042 0.958 31 H 0.049 0.951 32 H 0.087 0.913 33 H 0.105 0.895 34 H 0.116 0.884 35 H 0.193 0.807 36 H 0.413 0.587 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.070 0.930 42 H 0.098 0.902 43 H 0.063 0.937 44 H 0.043 0.957 45 H 0.260 0.740 46 H 0.032 0.968 47 H 0.038 0.962 48 H 0.096 0.904 49 H 0.081 0.919 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.784 -16.949 -12.087 23.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.103 4.103 3 C -0.085 4.085 4 C -0.092 4.092 5 C -0.155 4.155 6 C 0.344 3.656 7 O -0.422 6.422 8 N -0.333 5.333 9 C 0.075 3.925 10 C -0.158 4.158 11 C -0.147 4.147 12 C -0.145 4.145 13 C -0.114 4.114 14 H 0.124 0.876 15 C -0.001 4.001 16 N -0.354 5.354 17 C -0.341 4.341 18 H 0.088 0.912 19 C -0.226 4.226 20 N -0.606 5.606 21 Si 0.764 3.236 22 H -0.217 1.217 23 H -0.237 1.237 24 H -0.188 1.188 25 C -0.023 4.023 26 C -0.042 4.042 27 C -0.158 4.158 28 N -0.108 5.108 29 N -0.087 5.087 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.106 0.894 33 H 0.123 0.877 34 H 0.135 0.865 35 H 0.210 0.790 36 H 0.251 0.749 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.101 0.899 40 H 0.099 0.901 41 H 0.089 0.911 42 H 0.116 0.884 43 H 0.081 0.919 44 H 0.060 0.940 45 H 0.069 0.931 46 H 0.049 0.951 47 H 0.057 0.943 48 H 0.114 0.886 49 H 0.100 0.900 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 9.956 -15.746 -13.403 22.950 hybrid contribution 0.249 1.233 1.121 1.685 sum 10.205 -14.512 -12.283 21.578 Atomic orbital electron populations 1.21723 0.94042 1.03287 1.01554 1.20660 0.96942 0.86557 1.06117 1.23474 0.93800 1.00004 0.91217 1.22986 0.93366 0.94292 0.98551 1.21129 1.00590 0.96266 0.97554 1.18066 0.80802 0.85157 0.81615 1.90746 1.55594 1.19090 1.76783 1.45551 1.46629 1.17923 1.23155 1.22171 0.88697 0.94346 0.87278 1.22997 0.92734 0.99527 1.00555 1.22474 0.99178 0.96247 0.96840 1.22432 0.91570 1.03191 0.97322 1.22994 0.98551 0.97213 0.92596 0.87568 1.22262 0.91117 0.91101 0.95632 1.45595 1.20164 1.46231 1.23427 1.18581 0.95505 0.97077 1.22898 0.91179 1.25604 0.97006 0.99115 1.00851 1.69850 1.13004 1.23842 1.53877 0.86102 0.79844 0.79787 0.77822 1.21698 1.23729 1.18764 1.22541 0.96307 0.95592 0.87865 1.23226 0.91837 0.99112 0.90049 1.20883 1.02383 0.88079 1.04494 1.73023 1.09601 1.06304 1.21896 1.72649 1.17694 0.97554 1.20771 0.93899 0.93142 0.89428 0.87714 0.86544 0.78957 0.74855 0.91815 0.92024 0.89876 0.90082 0.91136 0.88387 0.91896 0.93953 0.93112 0.95079 0.94322 0.88562 0.89971 0.90018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.78 71.98 0.70 -1.48 16 2 C -0.06 -0.81 6.35 29.85 0.19 -0.62 16 3 C 0.06 1.29 6.25 42.62 0.27 1.55 16 4 C -0.06 -1.28 9.29 22.79 0.21 -1.07 16 5 C -0.14 -4.01 5.92 -19.83 -0.12 -4.13 16 6 C 0.56 17.80 6.88 86.87 0.60 18.40 16 7 O -0.54 -20.93 11.12 -3.77 -0.04 -20.97 16 8 N -0.68 -18.63 5.26 -414.77 -2.18 -20.81 16 9 C 0.16 4.93 0.93 5.99 0.01 4.93 16 10 C -0.12 -3.11 5.75 32.39 0.19 -2.92 16 11 C -0.11 -1.87 6.90 31.85 0.22 -1.65 16 12 C -0.11 -1.85 6.36 31.61 0.20 -1.65 16 13 C -0.09 -2.27 3.67 -9.19 -0.03 -2.30 16 14 H 0.11 2.09 7.74 -2.39 -0.02 2.08 16 15 C 0.12 4.15 6.74 86.52 0.58 4.73 16 16 N -0.63 -28.96 3.13 -686.52 -2.15 -31.11 16 17 C -0.21 -11.98 10.79 84.04 0.91 -11.07 16 18 H 0.07 4.21 8.06 -2.91 -0.02 4.18 16 19 C -0.03 -1.89 5.49 84.86 0.47 -1.42 16 20 N -0.96 -61.64 13.97 21.65 0.30 -61.34 16 21 Si 0.93 50.35 24.57 68.60 1.69 52.03 16 22 H -0.29 -15.95 6.41 99.48 0.64 -15.31 16 23 H -0.31 -16.75 7.11 99.48 0.71 -16.04 16 24 H -0.26 -13.51 6.43 99.48 0.64 -12.87 16 25 C 0.10 4.43 3.59 86.50 0.31 4.74 16 26 C 0.10 3.22 6.91 42.92 0.30 3.51 16 27 C -0.10 -3.04 9.01 71.24 0.64 -2.40 16 28 N -0.27 -8.52 11.42 -46.94 -0.54 -9.06 16 29 N -0.24 -6.96 11.04 -47.69 -0.53 -7.48 16 30 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.05 0.91 7.96 -2.38 -0.02 0.90 16 32 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.12 0.77 7.92 -2.39 -0.02 0.75 16 35 H 0.19 2.18 6.59 -2.91 -0.02 2.16 16 36 H 0.41 8.19 6.54 -92.71 -0.61 7.59 16 37 H 0.06 1.82 7.26 -2.39 -0.02 1.80 16 38 H 0.06 1.72 6.82 -2.39 -0.02 1.71 16 39 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.07 1.30 7.19 -2.39 -0.02 1.28 16 42 H 0.10 1.16 8.14 -2.38 -0.02 1.14 16 43 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 44 H 0.04 1.38 7.21 -2.39 -0.02 1.36 16 45 H 0.26 16.14 8.31 -92.71 -0.77 15.37 16 46 H 0.03 1.40 5.97 -2.38 -0.01 1.39 16 47 H 0.04 1.96 4.08 -2.39 -0.01 1.95 16 48 H 0.10 2.62 8.14 -2.38 -0.02 2.60 16 49 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 50 H 0.08 2.93 5.87 -2.39 -0.01 2.92 16 Total: -1.00 -79.88 381.87 2.42 -77.46 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: 0.23 Total: 14.12 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: 5.64 Total: 7.15 kcal Atomic # 7 Polarization: -124.70 SS G_CDS: -5.09 Total: -129.79 kcal Atomic # 8 Polarization: -20.93 SS G_CDS: -0.04 Total: -20.97 kcal Atomic # 14 Polarization: 50.35 SS G_CDS: 1.69 Total: 52.03 kcal Total: -79.88 2.42 -77.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098958302.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.130 kcal (2) G-P(sol) polarization free energy of solvation -79.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds