Wall clock time and date at job start Wed Apr 1 2020 03:55:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50703 * 120.00110 * 2 1 4 4 C 1.50698 * 120.00355 * 179.97438 * 2 1 3 5 5 C 1.53002 * 109.46976 * 0.02562 * 4 2 1 6 6 C 1.52997 * 109.47342 * 240.00292 * 4 2 1 7 7 C 1.50706 * 109.47294 * 120.00076 * 4 2 1 8 8 O 1.21279 * 119.99507 * 0.02562 * 7 4 2 9 9 N 1.34774 * 120.00020 * 180.02562 * 7 4 2 10 10 C 1.46496 * 119.99544 * 180.02562 * 9 7 4 11 11 H 1.09001 * 110.41872 * 323.96028 * 10 9 7 12 12 C 1.54734 * 110.46258 * 201.33726 * 10 9 7 13 13 C 1.53522 * 101.48846 * 265.63051 * 12 10 9 14 14 C 1.53042 * 115.30966 * 105.26089 * 13 12 10 15 15 N 1.47748 * 85.82594 * 93.66355 * 14 13 12 16 16 C 1.36945 * 134.41239 * 203.99037 * 15 14 13 17 17 H 1.08001 * 119.99866 * 179.97438 * 16 15 14 18 18 C 1.38813 * 119.99788 * 359.97228 * 16 15 14 19 19 N 1.31617 * 120.00215 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 119.99922 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47271 * 359.97438 * 20 18 16 22 22 H 1.48505 * 109.47356 * 119.99516 * 20 18 16 23 23 H 1.48495 * 109.47315 * 239.99870 * 20 18 16 24 24 C 1.47753 * 91.17774 * 23.96586 * 15 14 13 25 25 N 1.46153 * 106.63813 * 335.03763 * 13 12 10 26 26 C 1.37274 * 142.22424 * 196.46056 * 25 13 12 27 27 C 1.34522 * 106.91354 * 179.97438 * 26 25 13 28 28 N 1.33975 * 108.05062 * 359.97438 * 27 26 25 29 29 C 1.30865 * 109.34771 * 0.03842 * 28 27 26 30 30 H 1.08000 * 119.99962 * 179.97438 * 1 2 3 31 31 H 1.08003 * 120.00208 * 0.02562 * 1 2 3 32 32 H 1.08999 * 109.47412 * 269.99976 * 3 2 1 33 33 H 1.09001 * 109.46853 * 29.99370 * 3 2 1 34 34 H 1.08999 * 109.47182 * 149.99592 * 3 2 1 35 35 H 1.09004 * 109.47059 * 179.97438 * 5 4 2 36 36 H 1.08992 * 109.47060 * 299.99988 * 5 4 2 37 37 H 1.09004 * 109.46930 * 59.99902 * 5 4 2 38 38 H 1.08992 * 109.47280 * 299.99565 * 6 4 2 39 39 H 1.09002 * 109.46777 * 60.00285 * 6 4 2 40 40 H 1.09000 * 109.47140 * 179.97438 * 6 4 2 41 41 H 0.96994 * 119.99756 * 0.02562 * 9 7 4 42 42 H 1.09004 * 111.02407 * 23.66766 * 12 10 9 43 43 H 1.09003 * 111.02263 * 147.56614 * 12 10 9 44 44 H 1.08999 * 113.81184 * 207.88832 * 14 13 12 45 45 H 1.08999 * 113.81773 * 339.43670 * 14 13 12 46 46 H 0.96996 * 120.00666 * 180.02562 * 19 18 16 47 47 H 1.08994 * 113.81785 * 221.79364 * 24 15 14 48 48 H 1.09008 * 113.81303 * 90.25244 * 24 15 14 49 49 H 1.08002 * 126.53740 * 359.97438 * 26 25 13 50 50 H 1.07999 * 125.97233 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3050 0.0006 5 6 1.0693 -2.4680 0.0005 6 6 2.9431 -1.3856 1.2499 7 6 2.9300 -1.3854 -1.2299 8 8 2.9353 -0.4725 -2.0283 9 7 3.6988 -2.4716 -1.4429 10 6 4.5414 -2.5494 -2.6387 11 1 4.0396 -2.0863 -3.4883 12 6 4.8981 -4.0216 -2.9544 13 6 6.2553 -4.1650 -2.2512 14 6 6.2344 -4.9621 -0.9450 15 7 6.5870 -6.1302 -1.7782 16 6 6.4328 -7.4844 -1.6444 17 1 6.7872 -8.1474 -2.4198 18 6 5.8209 -8.0048 -0.5123 19 7 5.3894 -7.1968 0.4329 20 14 5.6112 -9.8518 -0.3295 21 1 6.1769 -10.5346 -1.5207 22 1 6.3226 -10.3126 0.8900 23 1 4.1670 -10.1769 -0.2126 24 6 7.1718 -5.2535 -2.8137 25 7 6.8290 -2.8232 -2.1714 26 6 8.0102 -2.1595 -1.9507 27 6 7.7429 -0.8442 -2.0405 28 7 6.4378 -0.7032 -2.3087 29 6 5.8815 -1.8850 -2.3885 30 1 -0.5400 -0.9353 -0.0004 31 1 -0.5400 0.9353 -0.0004 32 1 2.2452 1.6198 -1.0276 33 1 1.4743 2.0648 0.5137 34 1 3.0158 1.1748 0.5139 35 1 1.6143 -3.4120 0.0004 36 1 0.4423 -2.4101 0.8901 37 1 0.4430 -2.4105 -0.8898 38 1 3.6514 -0.5572 1.2495 39 1 2.3163 -1.3275 2.1398 40 1 3.4878 -2.3297 1.2505 41 1 3.6941 -3.2018 -0.8044 42 1 4.1624 -4.7026 -2.5264 43 1 4.9955 -4.1787 -4.0286 44 1 7.0140 -4.6728 -0.2403 45 1 5.2478 -5.0302 -0.4865 46 1 4.9622 -7.5603 1.2242 47 1 6.9268 -5.5520 -3.8329 48 1 8.2336 -5.0517 -2.6711 49 1 8.9708 -2.6080 -1.7444 50 1 8.4558 -0.0422 -1.9187 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101635319.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:55:24 Heat of formation + Delta-G solvation = 98.662166 kcal Electronic energy + Delta-G solvation = -31813.328658 eV Core-core repulsion = 27843.790331 eV Total energy + Delta-G solvation = -3969.538327 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.63474 -41.29269 -40.13041 -37.88713 -36.68306 -34.88540 -33.68047 -32.92128 -31.51403 -29.66540 -29.43973 -28.93104 -27.00718 -26.91898 -26.12293 -24.77964 -23.57428 -22.67517 -21.91752 -21.09407 -20.07812 -19.29907 -18.82773 -17.93563 -17.51100 -17.06285 -16.72330 -16.43615 -16.19952 -15.83255 -15.66303 -15.37321 -15.32226 -14.95401 -14.91472 -14.64994 -14.32945 -14.18981 -13.95645 -13.61364 -13.40918 -13.31641 -13.18798 -13.08800 -12.99989 -12.94364 -12.83410 -12.78839 -12.56614 -12.37073 -12.20740 -11.94036 -11.90600 -11.65569 -11.59003 -10.94437 -10.86923 -10.78979 -10.44898 -10.30817 -9.90878 -9.35624 -9.05785 -7.95987 -5.31014 0.97806 1.31144 1.48299 1.50311 1.58759 1.60999 1.76599 2.00433 2.44866 2.48013 2.85765 3.08108 3.28075 3.39571 3.47456 3.52606 3.58448 3.76163 3.91069 4.05008 4.08283 4.21284 4.35068 4.35943 4.55935 4.56931 4.65554 4.66399 4.67956 4.69782 4.75005 4.77646 4.79836 4.81032 4.85128 4.87683 5.06633 5.07817 5.12990 5.17034 5.21982 5.29293 5.34563 5.36926 5.47502 5.73058 5.80452 5.91254 5.97901 6.12904 6.45321 6.85274 7.18707 7.21496 7.53419 8.40343 9.20644 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.010611 B = 0.003974 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2638.221803 B = 7043.879803 C = 8937.449317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.113 4.113 3 C -0.111 4.111 4 C -0.042 4.042 5 C -0.142 4.142 6 C -0.135 4.135 7 C 0.527 3.473 8 O -0.554 6.554 9 N -0.710 5.710 10 C 0.232 3.768 11 H 0.112 0.888 12 C -0.088 4.088 13 C 0.119 3.881 14 C 0.177 3.823 15 N -0.621 5.621 16 C -0.236 4.236 17 H 0.089 0.911 18 C -0.050 4.050 19 N -0.945 5.945 20 Si 0.974 3.026 21 H -0.268 1.268 22 H -0.298 1.298 23 H -0.289 1.289 24 C 0.125 3.875 25 N -0.455 5.455 26 C -0.032 4.032 27 C -0.041 4.041 28 N -0.503 5.503 29 C 0.157 3.843 30 H 0.117 0.883 31 H 0.110 0.890 32 H 0.055 0.945 33 H 0.076 0.924 34 H 0.048 0.952 35 H 0.067 0.933 36 H 0.090 0.910 37 H 0.066 0.934 38 H 0.049 0.951 39 H 0.088 0.912 40 H 0.061 0.939 41 H 0.409 0.591 42 H 0.113 0.887 43 H 0.124 0.876 44 H 0.008 0.992 45 H 0.069 0.931 46 H 0.252 0.748 47 H 0.080 0.920 48 H 0.045 0.955 49 H 0.189 0.811 50 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.117 9.840 -1.433 11.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.114 4.114 3 C -0.167 4.167 4 C -0.045 4.045 5 C -0.199 4.199 6 C -0.193 4.193 7 C 0.314 3.686 8 O -0.431 6.431 9 N -0.363 5.363 10 C 0.125 3.875 11 H 0.130 0.870 12 C -0.126 4.126 13 C 0.035 3.965 14 C 0.050 3.950 15 N -0.347 5.347 16 C -0.364 4.364 17 H 0.106 0.894 18 C -0.244 4.244 19 N -0.593 5.593 20 Si 0.803 3.197 21 H -0.192 1.192 22 H -0.225 1.225 23 H -0.215 1.215 24 C -0.001 4.001 25 N -0.138 5.138 26 C -0.165 4.165 27 C -0.189 4.189 28 N -0.222 5.222 29 C -0.107 4.107 30 H 0.135 0.865 31 H 0.128 0.872 32 H 0.074 0.926 33 H 0.095 0.905 34 H 0.067 0.933 35 H 0.086 0.914 36 H 0.109 0.891 37 H 0.085 0.915 38 H 0.068 0.932 39 H 0.107 0.893 40 H 0.080 0.920 41 H 0.246 0.754 42 H 0.132 0.868 43 H 0.142 0.858 44 H 0.026 0.974 45 H 0.087 0.913 46 H 0.061 0.939 47 H 0.098 0.902 48 H 0.063 0.937 49 H 0.206 0.794 50 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -6.482 10.716 -1.948 12.674 hybrid contribution 1.156 -1.889 0.927 2.401 sum -5.327 8.827 -1.020 10.360 Atomic orbital electron populations 1.23995 0.94518 1.03332 1.00755 1.21308 0.95497 0.93796 1.00774 1.20773 0.99604 0.94741 1.01626 1.19845 0.95537 0.96318 0.92830 1.21983 0.98506 0.95525 1.03926 1.21831 0.99206 1.02022 0.96227 1.20943 0.79235 0.80940 0.87434 1.90681 1.66705 1.37924 1.47808 1.46040 1.43433 1.21691 1.25148 1.19746 0.83999 0.94078 0.89713 0.87003 1.22611 0.93447 0.93329 1.03252 1.23391 0.95196 0.77758 1.00188 1.22273 0.99201 0.83048 0.90468 1.45988 1.67870 1.01104 1.19782 1.19358 1.32717 0.80743 1.03565 0.89375 1.25474 1.00964 1.01710 0.96270 1.69919 1.45100 1.34510 1.09745 0.85089 0.77149 0.80126 0.77383 1.19191 1.22511 1.21525 1.22849 0.95519 0.86677 0.95030 1.46627 1.08646 1.08653 1.49849 1.22817 0.90785 0.92765 1.10130 1.22728 0.92636 0.95355 1.08184 1.69819 1.08439 1.23949 1.20003 1.24873 0.93861 0.85339 1.06590 0.86497 0.87226 0.92614 0.90524 0.93251 0.91434 0.89120 0.91537 0.93193 0.89330 0.92022 0.75441 0.86824 0.85760 0.97422 0.91331 0.93882 0.90213 0.93744 0.79408 0.78771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.60 13.29 67.79 0.90 -2.70 16 2 C -0.11 -2.64 4.42 -16.48 -0.07 -2.72 16 3 C -0.11 -2.72 9.13 71.24 0.65 -2.07 16 4 C -0.04 -1.00 0.72 -53.67 -0.04 -1.03 16 5 C -0.14 -2.70 7.02 71.98 0.51 -2.20 16 6 C -0.14 -3.06 8.19 71.98 0.59 -2.47 16 7 C 0.53 15.77 6.36 87.66 0.56 16.33 16 8 O -0.55 -20.35 14.41 -3.02 -0.04 -20.40 16 9 N -0.71 -20.24 4.91 -441.84 -2.17 -22.42 16 10 C 0.23 6.94 3.23 45.14 0.15 7.09 16 11 H 0.11 3.37 7.66 -2.39 -0.02 3.35 16 12 C -0.09 -2.45 6.08 31.36 0.19 -2.26 16 13 C 0.12 3.97 1.56 5.61 0.01 3.98 16 14 C 0.18 7.39 6.94 86.15 0.60 7.99 16 15 N -0.62 -27.69 3.69 -731.76 -2.70 -30.39 16 16 C -0.24 -11.72 10.70 84.03 0.90 -10.83 16 17 H 0.09 4.21 7.83 -2.91 -0.02 4.19 16 18 C -0.05 -2.53 5.50 84.86 0.47 -2.07 16 19 N -0.95 -50.50 11.39 21.65 0.25 -50.25 16 20 Si 0.97 41.53 29.55 68.60 2.03 43.56 16 21 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 22 H -0.30 -13.03 7.11 99.48 0.71 -12.32 16 23 H -0.29 -12.25 7.11 99.48 0.71 -11.54 16 24 C 0.12 4.41 8.46 86.14 0.73 5.14 16 25 N -0.45 -15.04 3.37 -481.38 -1.62 -16.66 16 26 C -0.03 -0.97 12.03 82.99 1.00 0.03 16 27 C -0.04 -1.27 11.86 83.51 0.99 -0.28 16 28 N -0.50 -18.76 11.25 -187.13 -2.11 -20.87 16 29 C 0.16 5.46 8.22 138.31 1.14 6.59 16 30 H 0.12 1.88 5.69 -2.91 -0.02 1.86 16 31 H 0.11 1.80 8.04 -2.91 -0.02 1.78 16 32 H 0.06 1.62 7.38 -2.39 -0.02 1.61 16 33 H 0.08 1.50 8.06 -2.39 -0.02 1.48 16 34 H 0.05 1.28 6.63 -2.39 -0.02 1.26 16 35 H 0.07 1.30 7.56 -2.39 -0.02 1.28 16 36 H 0.09 1.38 7.50 -2.39 -0.02 1.36 16 37 H 0.07 1.24 7.50 -2.38 -0.02 1.23 16 38 H 0.05 1.25 6.80 -2.39 -0.02 1.24 16 39 H 0.09 1.63 8.14 -2.39 -0.02 1.62 16 40 H 0.06 1.44 7.57 -2.39 -0.02 1.42 16 41 H 0.41 11.14 7.40 -92.71 -0.69 10.45 16 42 H 0.11 3.26 7.80 -2.38 -0.02 3.24 16 43 H 0.12 2.88 8.11 -2.39 -0.02 2.86 16 44 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 45 H 0.07 3.06 7.09 -2.39 -0.02 3.05 16 46 H 0.25 13.17 8.31 -92.71 -0.77 12.40 16 47 H 0.08 2.50 8.09 -2.39 -0.02 2.48 16 48 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 49 H 0.19 4.69 8.06 -2.91 -0.02 4.67 16 50 H 0.20 4.71 8.06 -2.91 -0.02 4.68 16 Total: -1.00 -66.63 399.17 3.15 -63.49 By element: Atomic # 1 Polarization: 35.17 SS G_CDS: 0.26 Total: 35.44 kcal Atomic # 6 Polarization: 9.25 SS G_CDS: 9.26 Total: 18.51 kcal Atomic # 7 Polarization: -132.23 SS G_CDS: -8.36 Total: -140.59 kcal Atomic # 8 Polarization: -20.35 SS G_CDS: -0.04 Total: -20.40 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.56 kcal Total: -66.63 3.15 -63.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101635319.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.148 kcal (2) G-P(sol) polarization free energy of solvation -66.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds