Wall clock time and date at job start Wed Apr 1 2020 03:30:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46819 * 2 1 4 4 C 1.50697 * 112.85436 * 63.53979 * 3 2 1 5 5 O 1.21286 * 119.99901 * 245.78337 * 4 3 2 6 6 N 1.34781 * 120.00206 * 66.04935 * 4 3 2 7 7 C 1.46495 * 120.00161 * 184.75396 * 6 4 3 8 8 H 1.08999 * 110.41832 * 325.70194 * 7 6 4 9 9 C 1.54733 * 110.46685 * 203.21500 * 7 6 4 10 10 C 1.53510 * 101.49582 * 216.97670 * 9 7 6 11 11 C 1.53043 * 115.28294 * 254.71576 * 10 9 7 12 12 N 1.47751 * 85.82418 * 220.07587 * 11 10 9 13 13 C 1.36940 * 134.40880 * 203.97156 * 12 11 10 14 14 H 1.08004 * 119.99547 * 179.97438 * 13 12 11 15 15 C 1.38804 * 120.00502 * 0.02562 * 13 12 11 16 16 N 1.31628 * 119.99816 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00422 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47119 * 89.99650 * 17 15 13 19 19 H 1.48495 * 109.47106 * 209.99677 * 17 15 13 20 20 H 1.48498 * 109.46679 * 329.99488 * 17 15 13 21 21 C 1.47760 * 91.17526 * 23.96845 * 12 11 10 22 22 N 1.46155 * 106.64229 * 24.93418 * 10 9 7 23 23 C 1.37264 * 142.21972 * 163.52368 * 22 10 9 24 24 C 1.34527 * 106.91834 * 180.02562 * 23 22 10 25 25 N 1.33985 * 108.04089 * 0.02562 * 24 23 22 26 26 C 1.30705 * 109.43539 * 359.86917 * 25 24 23 27 27 C 1.53785 * 113.61350 * 194.73221 * 3 2 1 28 28 C 1.53957 * 87.01743 * 89.23001 * 27 3 2 29 29 C 1.53781 * 87.11301 * 25.36319 * 28 27 3 30 30 H 1.08994 * 109.47453 * 295.25747 * 1 2 3 31 31 H 1.09001 * 109.47425 * 55.26573 * 1 2 3 32 32 H 1.08999 * 109.46856 * 175.26291 * 1 2 3 33 33 H 1.09000 * 109.47199 * 239.99500 * 2 1 3 34 34 H 1.09000 * 109.47250 * 119.99613 * 2 1 3 35 35 H 0.96999 * 119.99481 * 4.75556 * 6 4 3 36 36 H 1.09007 * 111.01704 * 335.02652 * 9 7 6 37 37 H 1.09003 * 111.02191 * 98.91927 * 9 7 6 38 38 H 1.09008 * 113.81377 * 334.30475 * 11 10 9 39 39 H 1.09005 * 113.81653 * 105.84634 * 11 10 9 40 40 H 0.97001 * 119.99925 * 180.02562 * 16 15 13 41 41 H 1.09001 * 113.81640 * 221.79592 * 21 12 11 42 42 H 1.08999 * 113.80972 * 90.25547 * 21 12 11 43 43 H 1.08004 * 126.54355 * 0.05856 * 23 22 10 44 44 H 1.07993 * 125.97984 * 179.97438 * 24 23 22 45 45 H 1.08991 * 113.61765 * 203.74638 * 27 3 2 46 46 H 1.08996 * 113.61739 * 334.65485 * 27 3 2 47 47 H 1.09005 * 113.53406 * 270.81333 * 28 27 3 48 48 H 1.08997 * 113.66719 * 139.93767 * 28 27 3 49 49 H 1.09000 * 113.61478 * 220.09264 * 29 28 27 50 50 H 1.08998 * 113.68781 * 89.20052 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.6516 2.2006 1.2432 5 8 0.8894 3.1409 1.1668 6 7 2.1555 1.8370 2.4392 7 6 1.6990 2.5055 3.6602 8 1 1.4830 3.5551 3.4610 9 6 2.7608 2.3744 4.7781 10 6 1.8767 2.2020 6.0211 11 6 1.7813 3.4291 6.9307 12 7 1.8542 2.4696 8.0519 13 6 1.4526 2.4930 9.3608 14 1 1.6272 1.6361 9.9946 15 6 0.8202 3.6175 9.8729 16 7 0.6070 4.6617 9.1003 17 14 0.2730 3.6497 11.6586 18 1 1.3700 4.1876 12.5029 19 1 -0.9256 4.5159 11.7935 20 1 -0.0602 2.2713 12.0990 21 6 2.5335 1.4747 7.1962 22 7 0.6052 1.6504 5.5572 23 6 -0.5287 1.0166 6.0007 24 6 -1.3078 0.8091 4.9238 25 7 -0.6723 1.2998 3.8512 26 6 0.4739 1.8084 4.2197 27 6 3.5301 1.5691 -0.3583 28 6 3.0851 1.6723 -1.8286 29 6 1.7403 2.2018 -1.3033 30 1 -0.3634 0.4385 0.9294 31 1 -0.3634 0.5855 -0.8445 32 1 -0.3633 -1.0242 -0.0849 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 2.8204 1.1326 2.4915 36 1 3.3885 1.4973 4.6201 37 1 3.3657 3.2782 4.8508 38 1 2.6423 4.0944 6.8640 39 1 0.8289 3.9548 6.8623 40 1 0.1655 5.4477 9.4583 41 1 2.1759 0.4549 7.3380 42 1 3.6207 1.5521 7.2095 43 1 -0.7529 0.7380 7.0198 44 1 -2.2757 0.3301 4.9238 45 1 3.9949 2.4786 0.0219 46 1 4.1097 0.6726 -0.1386 47 1 3.0088 0.7069 -2.3290 48 1 3.6479 2.4060 -2.4056 49 1 0.8771 1.8153 -1.8452 50 1 1.7134 3.2846 -1.1815 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101639963.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:30:14 Heat of formation + Delta-G solvation = 115.635350 kcal Electronic energy + Delta-G solvation = -31388.123932 eV Core-core repulsion = 27419.321618 eV Total energy + Delta-G solvation = -3968.802314 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.17122 -40.71303 -38.49651 -37.87791 -35.47915 -33.31997 -32.48254 -31.72955 -30.53538 -28.26882 -27.52187 -26.46435 -25.78488 -25.33100 -24.28999 -22.92334 -21.88699 -21.30007 -21.24723 -19.76333 -18.76455 -18.68771 -17.17068 -16.95676 -16.35684 -15.77098 -15.59821 -15.29130 -14.81598 -14.52762 -14.39332 -14.10596 -14.01554 -13.82867 -13.64019 -13.46474 -13.28322 -12.85473 -12.78351 -12.61550 -12.49409 -12.11116 -11.96615 -11.77965 -11.60562 -11.56771 -11.46111 -11.35369 -11.08648 -10.95950 -10.73563 -10.55857 -10.40245 -10.34549 -10.06423 -9.76692 -9.53231 -9.46043 -9.13687 -8.99957 -8.89756 -7.88000 -7.12307 -5.93115 -3.28159 2.48700 2.71577 3.05931 3.29577 3.31663 3.35372 3.37820 3.68369 4.09539 4.18313 4.26296 4.30131 4.47662 4.52394 4.56792 4.77196 4.82455 4.87331 5.05352 5.12635 5.18807 5.30413 5.39030 5.43913 5.48571 5.50249 5.55477 5.58889 5.65489 5.72002 5.73633 5.77075 5.86672 5.90057 5.95513 5.99363 6.09166 6.14688 6.17339 6.19451 6.22133 6.35945 6.44649 6.76722 6.94736 6.96438 7.29660 7.33807 7.50550 7.64080 7.78599 8.30968 8.62394 8.85805 9.53071 10.33854 11.23520 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.022653 B = 0.002765 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.759721 B =10124.485724 C =10593.759287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.091 4.091 3 C -0.103 4.103 4 C 0.537 3.463 5 O -0.526 6.526 6 N -0.716 5.716 7 C 0.233 3.767 8 H 0.116 0.884 9 C -0.119 4.119 10 C 0.103 3.897 11 C 0.167 3.833 12 N -0.605 5.605 13 C -0.232 4.232 14 H 0.082 0.918 15 C -0.001 4.001 16 N -0.917 5.917 17 Si 0.914 3.086 18 H -0.287 1.287 19 H -0.289 1.289 20 H -0.280 1.280 21 C 0.122 3.878 22 N -0.432 5.432 23 C 0.002 3.998 24 C -0.047 4.047 25 N -0.468 5.468 26 C 0.159 3.841 27 C -0.128 4.128 28 C -0.141 4.141 29 C -0.113 4.113 30 H 0.069 0.931 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.399 0.601 36 H 0.090 0.910 37 H 0.108 0.892 38 H 0.049 0.951 39 H 0.082 0.918 40 H 0.257 0.743 41 H 0.051 0.949 42 H 0.054 0.946 43 H 0.168 0.832 44 H 0.168 0.832 45 H 0.085 0.915 46 H 0.075 0.925 47 H 0.082 0.918 48 H 0.070 0.930 49 H 0.073 0.927 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.522 -8.986 -18.846 22.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.128 4.128 3 C -0.107 4.107 4 C 0.323 3.677 5 O -0.400 6.400 6 N -0.368 5.368 7 C 0.125 3.875 8 H 0.133 0.867 9 C -0.159 4.159 10 C 0.017 3.983 11 C 0.041 3.959 12 N -0.331 5.331 13 C -0.359 4.359 14 H 0.099 0.901 15 C -0.199 4.199 16 N -0.563 5.563 17 Si 0.744 3.256 18 H -0.214 1.214 19 H -0.215 1.215 20 H -0.205 1.205 21 C -0.004 4.004 22 N -0.113 5.113 23 C -0.132 4.132 24 C -0.195 4.195 25 N -0.187 5.187 26 C -0.105 4.105 27 C -0.165 4.165 28 C -0.178 4.178 29 C -0.150 4.150 30 H 0.088 0.912 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.234 0.766 36 H 0.108 0.892 37 H 0.126 0.874 38 H 0.066 0.934 39 H 0.100 0.900 40 H 0.067 0.933 41 H 0.069 0.931 42 H 0.072 0.928 43 H 0.186 0.814 44 H 0.185 0.815 45 H 0.104 0.896 46 H 0.093 0.907 47 H 0.100 0.900 48 H 0.089 0.911 49 H 0.092 0.908 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 6.552 -8.169 -19.160 21.835 hybrid contribution 0.151 -0.264 2.240 2.261 sum 6.703 -8.433 -16.920 20.058 Atomic orbital electron populations 1.21795 0.94670 1.01577 1.03373 1.21242 0.97018 0.92212 1.02352 1.22199 0.97924 0.97039 0.93507 1.20315 0.79624 0.83726 0.84014 1.90716 1.34569 1.28521 1.86224 1.45894 1.44731 1.40628 1.05543 1.19868 0.87234 0.96830 0.83521 0.86658 1.22848 0.96725 1.04656 0.91643 1.22912 0.81212 1.00341 0.93846 1.22557 1.01719 0.89871 0.81729 1.45973 1.66230 1.12871 1.08060 1.18955 1.32203 1.00358 0.84400 0.90056 1.24803 1.00756 0.95913 0.98412 1.69788 1.46512 1.05172 1.34837 0.86096 0.78032 0.77504 0.83958 1.21431 1.21473 1.20532 1.22737 0.96072 0.94874 0.86757 1.45801 1.14629 1.41426 1.09459 1.22402 0.87081 1.02872 1.00830 1.22149 1.01217 1.08289 0.87871 1.69642 1.03847 1.14490 1.30765 1.24444 0.97204 1.05590 0.83234 1.23006 0.93925 1.02704 0.96897 1.22856 0.97398 1.01578 0.95969 1.22848 0.97609 1.00776 0.93816 0.91188 0.92565 0.92740 0.91080 0.91464 0.76617 0.89174 0.87386 0.93391 0.89976 0.93324 0.93073 0.92814 0.81432 0.81505 0.89621 0.90652 0.89971 0.91137 0.90788 0.89131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.72 9.59 37.16 0.36 -1.36 16 2 C -0.09 -0.81 5.29 -26.73 -0.14 -0.95 16 3 C -0.10 -1.00 0.78 -154.85 -0.12 -1.12 16 4 C 0.54 7.14 5.96 -10.98 -0.07 7.07 16 5 O -0.53 -9.32 15.80 5.55 0.09 -9.24 16 6 N -0.72 -8.51 5.14 -53.59 -0.28 -8.78 16 7 C 0.23 3.40 3.29 -67.71 -0.22 3.18 16 8 H 0.12 1.87 7.54 -51.93 -0.39 1.48 16 9 C -0.12 -1.50 6.21 -25.55 -0.16 -1.65 16 10 C 0.10 1.80 1.55 -136.73 -0.21 1.59 16 11 C 0.17 3.66 6.97 -3.34 -0.02 3.64 16 12 N -0.60 -14.38 3.70 -182.64 -0.68 -15.06 16 13 C -0.23 -6.18 10.70 -15.06 -0.16 -6.34 16 14 H 0.08 2.10 7.83 -52.48 -0.41 1.69 16 15 C 0.00 -0.04 5.50 -17.43 -0.10 -0.13 16 16 N -0.92 -26.38 11.39 55.49 0.63 -25.75 16 17 Si 0.91 21.58 29.55 -169.99 -5.02 16.55 16 18 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 21 C 0.12 2.25 8.45 -3.35 -0.03 2.22 16 22 N -0.43 -8.09 3.38 -103.49 -0.35 -8.44 16 23 C 0.00 0.05 12.03 -16.43 -0.20 -0.15 16 24 C -0.05 -0.86 11.86 -17.92 -0.21 -1.07 16 25 N -0.47 -9.14 11.24 -10.47 -0.12 -9.26 16 26 C 0.16 2.89 8.24 -154.52 -1.27 1.62 16 27 C -0.13 -0.92 7.23 -25.82 -0.19 -1.11 16 28 C -0.14 -0.97 7.74 -25.83 -0.20 -1.17 16 29 C -0.11 -1.07 6.71 -25.92 -0.17 -1.24 16 30 H 0.07 1.01 7.67 -51.93 -0.40 0.61 16 31 H 0.06 0.60 6.76 -51.93 -0.35 0.25 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.50 7.31 -51.93 -0.38 0.12 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.40 3.57 8.41 -40.82 -0.34 3.23 16 36 H 0.09 0.89 7.80 -51.93 -0.41 0.48 16 37 H 0.11 1.18 7.84 -51.93 -0.41 0.77 16 38 H 0.05 1.02 7.95 -51.92 -0.41 0.60 16 39 H 0.08 2.12 7.19 -51.93 -0.37 1.75 16 40 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 41 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.05 0.88 8.13 -51.93 -0.42 0.46 16 43 H 0.17 3.14 8.06 -52.48 -0.42 2.71 16 44 H 0.17 2.52 8.06 -52.49 -0.42 2.10 16 45 H 0.09 0.64 8.09 -51.93 -0.42 0.22 16 46 H 0.07 0.43 8.10 -51.93 -0.42 0.01 16 47 H 0.08 0.48 7.60 -51.93 -0.39 0.09 16 48 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 49 H 0.07 0.68 6.84 -51.93 -0.36 0.33 16 50 H 0.09 0.99 7.71 -51.93 -0.40 0.59 16 LS Contribution 399.44 15.07 6.02 6.02 Total: -1.00 -33.89 399.44 -10.78 -44.67 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -7.96 Total: 6.27 kcal Atomic # 6 Polarization: 6.13 SS G_CDS: -3.12 Total: 3.01 kcal Atomic # 7 Polarization: -66.50 SS G_CDS: -0.79 Total: -67.29 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: 0.09 Total: -9.24 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.89 -10.78 -44.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101639963.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.305 kcal (2) G-P(sol) polarization free energy of solvation -33.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds