Wall clock time and date at job start Wed Apr 1 2020 03:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46819 * 2 1 4 4 C 1.50697 * 112.85436 * 63.53979 * 3 2 1 5 5 O 1.21286 * 119.99901 * 245.78337 * 4 3 2 6 6 N 1.34781 * 120.00206 * 66.04935 * 4 3 2 7 7 C 1.46495 * 120.00161 * 184.75396 * 6 4 3 8 8 H 1.08999 * 110.41832 * 325.70194 * 7 6 4 9 9 C 1.54733 * 110.46685 * 203.21500 * 7 6 4 10 10 C 1.53510 * 101.49582 * 216.97670 * 9 7 6 11 11 C 1.53043 * 115.28294 * 254.71576 * 10 9 7 12 12 N 1.47751 * 85.82418 * 220.07587 * 11 10 9 13 13 C 1.36940 * 134.40880 * 203.97156 * 12 11 10 14 14 H 1.08004 * 119.99547 * 179.97438 * 13 12 11 15 15 C 1.38804 * 120.00502 * 0.02562 * 13 12 11 16 16 N 1.31628 * 119.99816 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00422 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47119 * 89.99650 * 17 15 13 19 19 H 1.48495 * 109.47106 * 209.99677 * 17 15 13 20 20 H 1.48498 * 109.46679 * 329.99488 * 17 15 13 21 21 C 1.47760 * 91.17526 * 23.96845 * 12 11 10 22 22 N 1.46155 * 106.64229 * 24.93418 * 10 9 7 23 23 C 1.37264 * 142.21972 * 163.52368 * 22 10 9 24 24 C 1.34527 * 106.91834 * 180.02562 * 23 22 10 25 25 N 1.33985 * 108.04089 * 0.02562 * 24 23 22 26 26 C 1.30705 * 109.43539 * 359.86917 * 25 24 23 27 27 C 1.53785 * 113.61350 * 194.73221 * 3 2 1 28 28 C 1.53957 * 87.01743 * 89.23001 * 27 3 2 29 29 C 1.53781 * 87.11301 * 25.36319 * 28 27 3 30 30 H 1.08994 * 109.47453 * 295.25747 * 1 2 3 31 31 H 1.09001 * 109.47425 * 55.26573 * 1 2 3 32 32 H 1.08999 * 109.46856 * 175.26291 * 1 2 3 33 33 H 1.09000 * 109.47199 * 239.99500 * 2 1 3 34 34 H 1.09000 * 109.47250 * 119.99613 * 2 1 3 35 35 H 0.96999 * 119.99481 * 4.75556 * 6 4 3 36 36 H 1.09007 * 111.01704 * 335.02652 * 9 7 6 37 37 H 1.09003 * 111.02191 * 98.91927 * 9 7 6 38 38 H 1.09008 * 113.81377 * 334.30475 * 11 10 9 39 39 H 1.09005 * 113.81653 * 105.84634 * 11 10 9 40 40 H 0.97001 * 119.99925 * 180.02562 * 16 15 13 41 41 H 1.09001 * 113.81640 * 221.79592 * 21 12 11 42 42 H 1.08999 * 113.80972 * 90.25547 * 21 12 11 43 43 H 1.08004 * 126.54355 * 0.05856 * 23 22 10 44 44 H 1.07993 * 125.97984 * 179.97438 * 24 23 22 45 45 H 1.08991 * 113.61765 * 203.74638 * 27 3 2 46 46 H 1.08996 * 113.61739 * 334.65485 * 27 3 2 47 47 H 1.09005 * 113.53406 * 270.81333 * 28 27 3 48 48 H 1.08997 * 113.66719 * 139.93767 * 28 27 3 49 49 H 1.09000 * 113.61478 * 220.09264 * 29 28 27 50 50 H 1.08998 * 113.68781 * 89.20052 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.6516 2.2006 1.2432 5 8 0.8894 3.1409 1.1668 6 7 2.1555 1.8370 2.4392 7 6 1.6990 2.5055 3.6602 8 1 1.4830 3.5551 3.4610 9 6 2.7608 2.3744 4.7781 10 6 1.8767 2.2020 6.0211 11 6 1.7813 3.4291 6.9307 12 7 1.8542 2.4696 8.0519 13 6 1.4526 2.4930 9.3608 14 1 1.6272 1.6361 9.9946 15 6 0.8202 3.6175 9.8729 16 7 0.6070 4.6617 9.1003 17 14 0.2730 3.6497 11.6586 18 1 1.3700 4.1876 12.5029 19 1 -0.9256 4.5159 11.7935 20 1 -0.0602 2.2713 12.0990 21 6 2.5335 1.4747 7.1962 22 7 0.6052 1.6504 5.5572 23 6 -0.5287 1.0166 6.0007 24 6 -1.3078 0.8091 4.9238 25 7 -0.6723 1.2998 3.8512 26 6 0.4739 1.8084 4.2197 27 6 3.5301 1.5691 -0.3583 28 6 3.0851 1.6723 -1.8286 29 6 1.7403 2.2018 -1.3033 30 1 -0.3634 0.4385 0.9294 31 1 -0.3634 0.5855 -0.8445 32 1 -0.3633 -1.0242 -0.0849 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 2.8204 1.1326 2.4915 36 1 3.3885 1.4973 4.6201 37 1 3.3657 3.2782 4.8508 38 1 2.6423 4.0944 6.8640 39 1 0.8289 3.9548 6.8623 40 1 0.1655 5.4477 9.4583 41 1 2.1759 0.4549 7.3380 42 1 3.6207 1.5521 7.2095 43 1 -0.7529 0.7380 7.0198 44 1 -2.2757 0.3301 4.9238 45 1 3.9949 2.4786 0.0219 46 1 4.1097 0.6726 -0.1386 47 1 3.0088 0.7069 -2.3290 48 1 3.6479 2.4060 -2.4056 49 1 0.8771 1.8153 -1.8452 50 1 1.7134 3.2846 -1.1815 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101639963.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:30:13 Heat of formation + Delta-G solvation = 94.136658 kcal Electronic energy + Delta-G solvation = -31389.056185 eV Core-core repulsion = 27419.321618 eV Total energy + Delta-G solvation = -3969.734568 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.58703 -41.58808 -40.01681 -38.84533 -36.77546 -34.87046 -33.58196 -33.16903 -31.84303 -29.85175 -28.98357 -27.49352 -26.94692 -26.44601 -25.69859 -23.76606 -23.28799 -22.86226 -22.20269 -21.13756 -20.16127 -19.62473 -18.84401 -17.98223 -17.58240 -17.25046 -16.61320 -16.48169 -16.27574 -15.78723 -15.67233 -15.56610 -15.22688 -15.06619 -14.84087 -14.78399 -14.54997 -14.13920 -13.97963 -13.56431 -13.51325 -13.33009 -13.24413 -13.19174 -13.01111 -12.82507 -12.59103 -12.45601 -12.26881 -12.15609 -11.93245 -11.84818 -11.81784 -11.58064 -11.20892 -11.05715 -11.05228 -10.86872 -10.55190 -10.42145 -10.23162 -9.33575 -9.04194 -7.98497 -5.32416 1.05674 1.41312 1.42304 1.50820 1.61821 1.83587 2.04293 2.33754 2.40894 2.83203 3.11599 3.28900 3.36679 3.46679 3.49762 3.58882 3.75180 3.84568 3.95933 4.03771 4.09758 4.23087 4.27119 4.42529 4.51692 4.57834 4.59904 4.64587 4.68109 4.71814 4.75933 4.86721 4.87328 4.91405 4.92886 5.06842 5.07428 5.09288 5.17775 5.19173 5.22381 5.36768 5.37550 5.39588 5.46875 5.50318 5.59001 5.80924 5.90854 6.19121 6.58500 6.81491 7.17265 7.33251 7.52372 8.41162 9.17656 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.022653 B = 0.002765 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.759721 B =10124.485724 C =10593.759287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.085 4.085 3 C -0.104 4.104 4 C 0.532 3.468 5 O -0.579 6.579 6 N -0.700 5.700 7 C 0.235 3.765 8 H 0.095 0.905 9 C -0.099 4.099 10 C 0.117 3.883 11 C 0.164 3.836 12 N -0.636 5.636 13 C -0.231 4.231 14 H 0.086 0.914 15 C -0.062 4.062 16 N -0.951 5.951 17 Si 0.975 3.025 18 H -0.284 1.284 19 H -0.300 1.300 20 H -0.268 1.268 21 C 0.130 3.870 22 N -0.441 5.441 23 C -0.022 4.022 24 C -0.045 4.045 25 N -0.498 5.498 26 C 0.158 3.842 27 C -0.117 4.117 28 C -0.127 4.127 29 C -0.125 4.125 30 H 0.028 0.972 31 H 0.052 0.948 32 H 0.066 0.934 33 H 0.101 0.899 34 H 0.075 0.925 35 H 0.418 0.582 36 H 0.133 0.867 37 H 0.132 0.868 38 H 0.056 0.944 39 H 0.031 0.969 40 H 0.247 0.753 41 H 0.053 0.947 42 H 0.092 0.908 43 H 0.163 0.837 44 H 0.191 0.809 45 H 0.082 0.918 46 H 0.102 0.898 47 H 0.101 0.899 48 H 0.078 0.922 49 H 0.070 0.930 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.540 -11.508 -20.285 25.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.123 4.123 3 C -0.107 4.107 4 C 0.321 3.679 5 O -0.458 6.458 6 N -0.352 5.352 7 C 0.126 3.874 8 H 0.113 0.887 9 C -0.138 4.138 10 C 0.031 3.969 11 C 0.038 3.962 12 N -0.362 5.362 13 C -0.360 4.360 14 H 0.103 0.897 15 C -0.256 4.256 16 N -0.600 5.600 17 Si 0.803 3.197 18 H -0.210 1.210 19 H -0.226 1.226 20 H -0.193 1.193 21 C 0.005 3.995 22 N -0.123 5.123 23 C -0.156 4.156 24 C -0.192 4.192 25 N -0.217 5.217 26 C -0.106 4.106 27 C -0.154 4.154 28 C -0.164 4.164 29 C -0.163 4.163 30 H 0.047 0.953 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.119 0.881 34 H 0.093 0.907 35 H 0.256 0.744 36 H 0.151 0.849 37 H 0.150 0.850 38 H 0.074 0.926 39 H 0.050 0.950 40 H 0.056 0.944 41 H 0.072 0.928 42 H 0.110 0.890 43 H 0.180 0.820 44 H 0.208 0.792 45 H 0.101 0.899 46 H 0.121 0.879 47 H 0.120 0.880 48 H 0.096 0.904 49 H 0.089 0.911 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 9.623 -10.765 -20.607 25.162 hybrid contribution -0.866 0.503 2.636 2.819 sum 8.757 -10.262 -17.972 22.472 Atomic orbital electron populations 1.21755 0.96709 1.01795 1.00949 1.21271 0.95082 0.91740 1.04173 1.22317 1.00249 0.96937 0.91234 1.21097 0.78475 0.83114 0.85238 1.90694 1.36975 1.31057 1.87029 1.45723 1.44601 1.40620 1.04293 1.19812 0.86756 0.95584 0.85212 0.88723 1.22940 0.95624 1.07899 0.87380 1.22743 0.81434 0.97099 0.95625 1.22454 0.99426 0.91188 0.83176 1.46264 1.67326 1.14954 1.07694 1.19312 1.30766 1.00013 0.85866 0.89662 1.25569 1.01936 0.96045 1.02034 1.69986 1.48210 1.05590 1.36214 0.85131 0.77051 0.77605 0.79870 1.21037 1.22642 1.19291 1.22947 0.97607 0.93802 0.85167 1.45987 1.15040 1.41525 1.09768 1.22500 0.87978 1.04206 1.00913 1.22573 1.01828 1.07536 0.87306 1.69678 1.04812 1.15735 1.31507 1.25177 0.97591 1.04495 0.83343 1.23013 0.91914 1.03866 0.96638 1.22845 0.95028 1.02492 0.96048 1.22886 0.99473 0.99516 0.94408 0.95313 0.92918 0.91514 0.88066 0.90668 0.74387 0.84852 0.84963 0.92602 0.95021 0.94371 0.92843 0.89027 0.81953 0.79239 0.89916 0.87912 0.88037 0.90372 0.91116 0.91492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.26 9.59 71.98 0.69 -2.57 16 2 C -0.09 -1.27 5.29 30.59 0.16 -1.10 16 3 C -0.10 -1.80 0.78 -52.40 -0.04 -1.84 16 4 C 0.53 13.79 5.96 87.66 0.52 14.31 16 5 O -0.58 -21.27 15.80 -3.05 -0.05 -21.32 16 6 N -0.70 -15.24 5.14 -441.84 -2.27 -17.51 16 7 C 0.23 6.60 3.29 45.14 0.15 6.75 16 8 H 0.09 3.12 7.54 -2.39 -0.02 3.10 16 9 C -0.10 -2.17 6.21 31.36 0.19 -1.98 16 10 C 0.12 3.92 1.55 5.61 0.01 3.93 16 11 C 0.16 7.24 6.97 86.15 0.60 7.84 16 12 N -0.64 -30.08 3.70 -731.75 -2.71 -32.79 16 13 C -0.23 -12.38 10.70 84.03 0.90 -11.48 16 14 H 0.09 4.36 7.83 -2.91 -0.02 4.34 16 15 C -0.06 -3.48 5.50 84.86 0.47 -3.01 16 16 N -0.95 -56.85 11.39 21.65 0.25 -56.60 16 17 Si 0.97 45.22 29.55 68.60 2.03 47.25 16 18 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 19 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 20 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 21 C 0.13 4.46 8.45 86.14 0.73 5.19 16 22 N -0.44 -16.51 3.38 -481.34 -1.63 -18.14 16 23 C -0.02 -0.86 12.03 82.99 1.00 0.14 16 24 C -0.04 -1.65 11.86 83.51 0.99 -0.66 16 25 N -0.50 -19.76 11.24 -187.05 -2.10 -21.86 16 26 C 0.16 5.74 8.24 138.28 1.14 6.88 16 27 C -0.12 -1.24 7.23 31.18 0.23 -1.02 16 28 C -0.13 -1.31 7.74 31.18 0.24 -1.07 16 29 C -0.12 -2.23 6.71 31.12 0.21 -2.02 16 30 H 0.03 0.83 7.67 -2.39 -0.02 0.81 16 31 H 0.05 1.11 6.76 -2.39 -0.02 1.10 16 32 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.10 0.96 7.31 -2.39 -0.02 0.94 16 34 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.42 5.87 8.41 -92.71 -0.78 5.09 16 36 H 0.13 1.85 7.80 -2.38 -0.02 1.83 16 37 H 0.13 2.37 7.84 -2.39 -0.02 2.35 16 38 H 0.06 2.36 7.95 -2.38 -0.02 2.34 16 39 H 0.03 1.72 7.19 -2.38 -0.02 1.70 16 40 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 41 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.09 2.56 8.13 -2.39 -0.02 2.54 16 43 H 0.16 6.31 8.06 -2.91 -0.02 6.29 16 44 H 0.19 5.76 8.06 -2.91 -0.02 5.74 16 45 H 0.08 0.97 8.09 -2.39 -0.02 0.95 16 46 H 0.10 0.59 8.10 -2.39 -0.02 0.57 16 47 H 0.10 0.71 7.60 -2.38 -0.02 0.69 16 48 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 49 H 0.07 1.27 6.84 -2.39 -0.02 1.25 16 50 H 0.07 1.51 7.71 -2.39 -0.02 1.49 16 Total: -1.00 -79.69 399.44 1.87 -77.82 By element: Atomic # 1 Polarization: 24.71 SS G_CDS: 0.17 Total: 24.88 kcal Atomic # 6 Polarization: 10.08 SS G_CDS: 8.18 Total: 18.27 kcal Atomic # 7 Polarization: -138.44 SS G_CDS: -8.47 Total: -146.90 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: -0.05 Total: -21.32 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -79.69 1.87 -77.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101639963.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.959 kcal (2) G-P(sol) polarization free energy of solvation -79.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds