Wall clock time and date at job start Wed Apr 1 2020 03:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50697 * 119.99860 * 2 1 4 4 C 1.53003 * 109.47253 * 240.00093 * 3 2 1 5 5 C 1.53002 * 109.47032 * 120.00314 * 3 2 1 6 6 C 1.52998 * 109.47185 * 60.00073 * 5 3 2 7 7 C 1.50705 * 109.47195 * 0.02562 * 3 2 1 8 8 O 1.21277 * 119.99649 * 119.99831 * 7 3 2 9 9 N 1.34773 * 120.00062 * 300.00005 * 7 3 2 10 10 C 1.46504 * 119.99938 * 180.02562 * 9 7 3 11 11 H 1.09001 * 110.41412 * 323.96900 * 10 9 7 12 12 C 1.54763 * 110.56575 * 201.40425 * 10 9 7 13 13 C 1.53391 * 101.44634 * 217.02359 * 12 10 9 14 14 C 1.52455 * 115.83829 * 253.18820 * 13 12 10 15 15 N 1.47255 * 87.71878 * 218.48324 * 14 13 12 16 16 C 1.36931 * 135.94608 * 206.21242 * 15 14 13 17 17 H 1.08005 * 119.99911 * 7.62047 * 16 15 14 18 18 C 1.38809 * 120.00488 * 187.62465 * 16 15 14 19 19 N 1.31620 * 120.00031 * 174.52156 * 18 16 15 20 20 Si 1.86800 * 119.99803 * 354.52030 * 18 16 15 21 21 H 1.48499 * 109.47140 * 174.93079 * 20 18 16 22 22 H 1.48501 * 109.47124 * 294.92725 * 20 18 16 23 23 H 1.48504 * 109.47236 * 54.93055 * 20 18 16 24 24 C 1.47267 * 88.11783 * 26.46258 * 15 14 13 25 25 N 1.46044 * 106.81166 * 24.82192 * 13 12 10 26 26 C 1.37266 * 142.31730 * 163.62400 * 25 13 12 27 27 C 1.34525 * 106.92953 * 180.12116 * 26 25 13 28 28 N 1.33976 * 108.04498 * 359.96334 * 27 26 25 29 29 C 1.30846 * 109.35863 * 359.97438 * 28 27 26 30 30 H 1.08003 * 119.99821 * 359.97438 * 1 2 3 31 31 H 1.07995 * 119.99811 * 180.02562 * 1 2 3 32 32 H 1.08003 * 119.99821 * 180.02562 * 2 1 3 33 33 H 1.08999 * 109.47127 * 179.97438 * 4 3 2 34 34 H 1.08998 * 109.47252 * 300.00243 * 4 3 2 35 35 H 1.09002 * 109.46411 * 60.00465 * 4 3 2 36 36 H 1.08999 * 109.47025 * 180.02562 * 5 3 2 37 37 H 1.09003 * 109.47104 * 300.00117 * 5 3 2 38 38 H 1.08999 * 109.47208 * 299.99973 * 6 5 3 39 39 H 1.09003 * 109.47063 * 60.00019 * 6 5 3 40 40 H 1.08997 * 109.47036 * 180.02562 * 6 5 3 41 41 H 0.97001 * 119.99892 * 359.97438 * 9 7 3 42 42 H 1.08991 * 111.02806 * 98.98776 * 12 10 9 43 43 H 1.08994 * 111.03299 * 335.06469 * 12 10 9 44 44 H 1.08999 * 113.51862 * 103.77241 * 14 13 12 45 45 H 1.08998 * 113.57481 * 333.20235 * 14 13 12 46 46 H 0.97002 * 120.00334 * 354.79370 * 19 18 16 47 47 H 1.09000 * 113.51113 * 88.24557 * 24 15 14 48 48 H 1.08993 * 113.51222 * 218.81646 * 24 15 14 49 49 H 1.08000 * 126.54032 * 0.07874 * 26 25 13 50 50 H 1.08000 * 125.97898 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9431 1.3862 -1.2493 5 6 2.9432 1.3861 1.2492 6 6 3.9374 0.2232 1.2491 7 6 1.0842 2.4506 0.0006 8 8 1.0896 3.2525 0.9104 9 7 0.2023 2.5837 -1.0098 10 6 -0.7494 3.6976 -1.0094 11 1 -1.0775 3.9170 0.0066 12 6 -1.9639 3.3753 -1.9128 13 6 -2.2531 4.7471 -2.5350 14 6 -3.4939 5.4644 -2.0150 15 7 -3.7380 5.9177 -3.3946 16 6 -4.3728 6.9780 -3.9843 17 1 -4.7406 7.7925 -3.3778 18 6 -4.5438 7.0062 -5.3615 19 7 -5.2470 7.9697 -5.9178 20 14 -3.7757 5.6766 -6.4254 21 1 -4.2041 5.8617 -7.8352 22 1 -2.2959 5.7689 -6.3415 23 1 -4.2165 4.3423 -5.9452 24 6 -3.0063 4.7286 -3.8632 25 7 -1.0020 5.4996 -2.4987 26 6 -0.3811 6.6014 -3.0323 27 6 0.8470 6.6617 -2.4866 28 7 0.9773 5.6292 -1.6428 29 6 -0.1269 4.9272 -1.6426 30 1 -0.5400 0.9354 0.0004 31 1 -0.5399 -0.9353 0.0004 32 1 1.8500 -0.9354 -0.0004 33 1 3.4877 2.3304 -1.2495 34 1 3.6514 0.5577 -1.2493 35 1 2.3163 1.3285 -2.1392 36 1 3.4878 2.3303 1.2495 37 1 2.3165 1.3283 2.1393 38 1 3.3925 -0.7208 1.2491 39 1 4.5641 0.2810 0.3591 40 1 4.5638 0.2807 2.1393 41 1 0.1982 1.9425 -1.7376 42 1 -2.8106 3.0281 -1.3206 43 1 -1.6993 2.6464 -2.6787 44 1 -3.2691 6.2766 -1.3238 45 1 -4.2614 4.7891 -1.6370 46 1 -5.7085 8.6167 -5.3616 47 1 -3.6397 3.8509 -3.9916 48 1 -2.3711 4.9216 -4.7277 49 1 -0.7986 7.2886 -3.7533 50 1 1.5968 7.4113 -2.6925 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101642452.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:55:41 Heat of formation + Delta-G solvation = 131.832659 kcal Electronic energy + Delta-G solvation = -31474.408913 eV Core-core repulsion = 27506.308966 eV Total energy + Delta-G solvation = -3968.099946 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.43091 -40.56964 -38.96312 -36.85746 -35.79686 -33.63717 -32.42579 -31.98462 -30.70121 -29.56253 -28.55165 -27.43939 -25.91046 -25.62938 -24.36693 -22.18746 -21.99811 -21.67255 -21.09874 -19.98704 -19.12181 -19.00950 -17.67587 -17.00754 -16.64158 -16.21419 -15.94610 -15.44030 -14.75371 -14.71972 -14.52971 -14.39521 -14.09328 -14.07410 -13.81609 -13.69950 -13.36253 -13.32984 -12.92355 -12.85699 -12.51929 -12.43987 -12.29065 -12.22771 -12.08094 -11.95397 -11.80243 -11.34721 -11.13325 -11.08102 -10.76045 -10.72258 -10.61436 -9.79519 -9.72335 -9.66863 -9.62122 -9.35198 -9.25017 -9.12241 -9.05227 -8.05624 -7.42304 -6.46571 -3.43719 1.91548 2.28813 2.55644 2.84622 3.07188 3.22948 3.26613 3.47565 3.51402 3.89203 4.26459 4.33132 4.36712 4.39261 4.42099 4.49788 4.66327 4.75335 4.82002 4.97767 5.09826 5.13525 5.25153 5.26081 5.31309 5.33466 5.42496 5.44975 5.54987 5.60056 5.62947 5.67783 5.75192 5.82902 5.84509 5.85701 5.91535 5.96532 6.02237 6.04627 6.12550 6.23483 6.25708 6.28944 6.36209 6.75245 6.80250 7.15832 7.30749 7.41821 8.06741 8.12392 8.44820 8.78745 9.28899 10.10010 11.02864 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.020165 B = 0.003003 C = 0.002881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.202980 B = 9321.413795 C = 9717.298096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.144 4.144 3 C -0.049 4.049 4 C -0.139 4.139 5 C -0.097 4.097 6 C -0.154 4.154 7 C 0.532 3.468 8 O -0.519 6.519 9 N -0.718 5.718 10 C 0.233 3.767 11 H 0.116 0.884 12 C -0.117 4.117 13 C 0.112 3.888 14 C 0.123 3.877 15 N -0.620 5.620 16 C -0.309 4.309 17 H 0.085 0.915 18 C -0.020 4.020 19 N -0.927 5.927 20 Si 1.066 2.934 21 H -0.291 1.291 22 H -0.293 1.293 23 H -0.286 1.286 24 C 0.099 3.901 25 N -0.435 5.435 26 C 0.000 4.000 27 C -0.043 4.043 28 N -0.464 5.464 29 C 0.158 3.842 30 H 0.110 0.890 31 H 0.102 0.898 32 H 0.121 0.879 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.059 0.941 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.055 0.945 39 H 0.058 0.942 40 H 0.056 0.944 41 H 0.403 0.597 42 H 0.112 0.888 43 H 0.096 0.904 44 H 0.054 0.946 45 H 0.061 0.939 46 H 0.263 0.737 47 H 0.067 0.933 48 H 0.063 0.937 49 H 0.172 0.828 50 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.786 -19.059 10.415 25.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.162 4.162 3 C -0.052 4.052 4 C -0.196 4.196 5 C -0.134 4.134 6 C -0.211 4.211 7 C 0.318 3.682 8 O -0.393 6.393 9 N -0.371 5.371 10 C 0.125 3.875 11 H 0.133 0.867 12 C -0.157 4.157 13 C 0.025 3.975 14 C -0.004 4.004 15 N -0.348 5.348 16 C -0.435 4.435 17 H 0.103 0.897 18 C -0.219 4.219 19 N -0.568 5.568 20 Si 0.898 3.102 21 H -0.218 1.218 22 H -0.221 1.221 23 H -0.213 1.213 24 C -0.027 4.027 25 N -0.118 5.118 26 C -0.133 4.133 27 C -0.191 4.191 28 N -0.183 5.183 29 C -0.105 4.105 30 H 0.128 0.872 31 H 0.121 0.879 32 H 0.138 0.862 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.078 0.922 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.239 0.761 42 H 0.130 0.870 43 H 0.114 0.886 44 H 0.073 0.927 45 H 0.078 0.922 46 H 0.073 0.927 47 H 0.085 0.915 48 H 0.080 0.920 49 H 0.189 0.811 50 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 14.381 -18.790 9.717 25.579 hybrid contribution -1.097 0.661 0.555 1.396 sum 13.284 -18.129 10.273 24.711 Atomic orbital electron populations 1.24364 0.96196 1.03191 1.00061 1.22754 0.95729 0.96946 1.00779 1.20004 0.95024 0.91478 0.98738 1.21870 0.99463 1.03239 0.95055 1.21331 0.96915 0.99514 0.95686 1.21893 0.99052 0.98238 1.01954 1.20376 0.80450 0.85821 0.81553 1.90732 1.69489 1.43326 1.35769 1.46143 1.36264 1.28847 1.25825 1.19894 0.86729 0.80847 0.99991 0.86658 1.22789 0.97782 0.95998 0.99110 1.22255 0.84293 0.89652 1.01343 1.22619 0.91020 0.96262 0.90493 1.46042 1.65785 1.22047 1.00921 1.20132 1.34660 0.96141 0.92525 0.89702 1.25704 0.99478 1.02604 0.94150 1.70903 1.31856 1.16681 1.37389 0.83779 0.75136 0.75025 0.76275 1.21792 1.22128 1.21334 1.23013 0.92912 0.92561 0.94258 1.45655 1.12739 1.20797 1.32562 1.22544 0.94136 0.92511 1.04140 1.22221 0.96523 0.99981 1.00327 1.69773 1.22348 1.05641 1.20555 1.24480 0.88630 0.99504 0.97905 0.87224 0.87924 0.86153 0.91425 0.90992 0.92183 0.90831 0.91194 0.92552 0.92299 0.92517 0.76134 0.87008 0.88564 0.92738 0.92153 0.92662 0.91538 0.91958 0.81060 0.81176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.43 13.17 29.01 0.38 -1.05 16 2 C -0.14 -1.03 7.99 -36.03 -0.29 -1.32 16 3 C -0.05 -0.45 0.62 -156.81 -0.10 -0.54 16 4 C -0.14 -1.11 8.00 37.16 0.30 -0.82 16 5 C -0.10 -0.89 4.27 -26.73 -0.11 -1.01 16 6 C -0.15 -1.02 9.30 37.16 0.35 -0.67 16 7 C 0.53 6.53 5.33 -10.98 -0.06 6.47 16 8 O -0.52 -8.56 15.69 5.56 0.09 -8.47 16 9 N -0.72 -7.72 3.33 -53.56 -0.18 -7.89 16 10 C 0.23 2.99 3.23 -67.68 -0.22 2.77 16 11 H 0.12 1.56 7.66 -51.93 -0.40 1.16 16 12 C -0.12 -1.28 6.24 -25.60 -0.16 -1.44 16 13 C 0.11 1.79 1.64 -133.41 -0.22 1.57 16 14 C 0.12 2.22 8.18 -7.90 -0.06 2.16 16 15 N -0.62 -14.13 3.70 -184.72 -0.68 -14.81 16 16 C -0.31 -8.47 11.08 -15.06 -0.17 -8.63 16 17 H 0.09 2.49 8.06 -52.48 -0.42 2.07 16 18 C -0.02 -0.56 5.50 -17.43 -0.10 -0.65 16 19 N -0.93 -28.33 13.70 55.49 0.76 -27.57 16 20 Si 1.07 25.42 25.17 -169.99 -4.28 21.14 16 21 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 22 H -0.29 -6.70 6.49 56.52 0.37 -6.33 16 23 H -0.29 -6.19 6.18 56.52 0.35 -5.84 16 24 C 0.10 1.88 5.23 -7.77 -0.04 1.84 16 25 N -0.44 -7.73 3.42 -100.94 -0.34 -8.08 16 26 C 0.00 0.00 12.03 -16.43 -0.20 -0.20 16 27 C -0.04 -0.75 11.86 -17.93 -0.21 -0.96 16 28 N -0.46 -8.70 11.25 -10.48 -0.12 -8.82 16 29 C 0.16 2.68 8.22 -154.56 -1.27 1.41 16 30 H 0.11 0.90 5.18 -52.48 -0.27 0.62 16 31 H 0.10 0.58 8.06 -52.49 -0.42 0.16 16 32 H 0.12 0.67 7.00 -52.48 -0.37 0.30 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.44 6.43 -51.93 -0.33 0.11 16 35 H 0.06 0.45 7.57 -51.93 -0.39 0.06 16 36 H 0.07 0.79 8.10 -51.93 -0.42 0.37 16 37 H 0.07 0.72 8.10 -51.93 -0.42 0.30 16 38 H 0.06 0.32 6.62 -51.93 -0.34 -0.02 16 39 H 0.06 0.35 6.43 -51.93 -0.33 0.02 16 40 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.40 3.36 7.15 -40.82 -0.29 3.07 16 42 H 0.11 0.92 7.87 -51.93 -0.41 0.51 16 43 H 0.10 0.86 7.80 -51.93 -0.41 0.45 16 44 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.06 0.94 7.98 -51.93 -0.41 0.53 16 46 H 0.26 7.97 8.73 -40.82 -0.36 7.61 16 47 H 0.07 1.15 7.60 -51.93 -0.39 0.76 16 48 H 0.06 1.29 4.80 -51.93 -0.25 1.04 16 49 H 0.17 3.25 8.06 -52.49 -0.42 2.83 16 50 H 0.17 2.47 8.06 -52.49 -0.42 2.05 16 LS Contribution 389.60 15.07 5.87 5.87 Total: -1.00 -35.14 389.60 -8.71 -43.84 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -7.65 Total: 5.85 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: -2.18 Total: -1.07 kcal Atomic # 7 Polarization: -66.60 SS G_CDS: -0.56 Total: -67.17 kcal Atomic # 8 Polarization: -8.56 SS G_CDS: 0.09 Total: -8.47 kcal Atomic # 14 Polarization: 25.42 SS G_CDS: -4.28 Total: 21.14 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -35.14 -8.71 -43.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101642452.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.677 kcal (2) G-P(sol) polarization free energy of solvation -35.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds