Wall clock time and date at job start Wed Apr 1 2020 03:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50697 * 119.99860 * 2 1 4 4 C 1.53003 * 109.47253 * 240.00093 * 3 2 1 5 5 C 1.53002 * 109.47032 * 120.00314 * 3 2 1 6 6 C 1.52998 * 109.47185 * 60.00073 * 5 3 2 7 7 C 1.50705 * 109.47195 * 0.02562 * 3 2 1 8 8 O 1.21277 * 119.99649 * 119.99831 * 7 3 2 9 9 N 1.34773 * 120.00062 * 300.00005 * 7 3 2 10 10 C 1.46504 * 119.99938 * 180.02562 * 9 7 3 11 11 H 1.09001 * 110.41412 * 323.96900 * 10 9 7 12 12 C 1.54763 * 110.56575 * 201.40425 * 10 9 7 13 13 C 1.53391 * 101.44634 * 217.02359 * 12 10 9 14 14 C 1.52455 * 115.83829 * 253.18820 * 13 12 10 15 15 N 1.47255 * 87.71878 * 218.48324 * 14 13 12 16 16 C 1.36931 * 135.94608 * 206.21242 * 15 14 13 17 17 H 1.08005 * 119.99911 * 7.62047 * 16 15 14 18 18 C 1.38809 * 120.00488 * 187.62465 * 16 15 14 19 19 N 1.31620 * 120.00031 * 174.52156 * 18 16 15 20 20 Si 1.86800 * 119.99803 * 354.52030 * 18 16 15 21 21 H 1.48499 * 109.47140 * 174.93079 * 20 18 16 22 22 H 1.48501 * 109.47124 * 294.92725 * 20 18 16 23 23 H 1.48504 * 109.47236 * 54.93055 * 20 18 16 24 24 C 1.47267 * 88.11783 * 26.46258 * 15 14 13 25 25 N 1.46044 * 106.81166 * 24.82192 * 13 12 10 26 26 C 1.37266 * 142.31730 * 163.62400 * 25 13 12 27 27 C 1.34525 * 106.92953 * 180.12116 * 26 25 13 28 28 N 1.33976 * 108.04498 * 359.96334 * 27 26 25 29 29 C 1.30846 * 109.35863 * 359.97438 * 28 27 26 30 30 H 1.08003 * 119.99821 * 359.97438 * 1 2 3 31 31 H 1.07995 * 119.99811 * 180.02562 * 1 2 3 32 32 H 1.08003 * 119.99821 * 180.02562 * 2 1 3 33 33 H 1.08999 * 109.47127 * 179.97438 * 4 3 2 34 34 H 1.08998 * 109.47252 * 300.00243 * 4 3 2 35 35 H 1.09002 * 109.46411 * 60.00465 * 4 3 2 36 36 H 1.08999 * 109.47025 * 180.02562 * 5 3 2 37 37 H 1.09003 * 109.47104 * 300.00117 * 5 3 2 38 38 H 1.08999 * 109.47208 * 299.99973 * 6 5 3 39 39 H 1.09003 * 109.47063 * 60.00019 * 6 5 3 40 40 H 1.08997 * 109.47036 * 180.02562 * 6 5 3 41 41 H 0.97001 * 119.99892 * 359.97438 * 9 7 3 42 42 H 1.08991 * 111.02806 * 98.98776 * 12 10 9 43 43 H 1.08994 * 111.03299 * 335.06469 * 12 10 9 44 44 H 1.08999 * 113.51862 * 103.77241 * 14 13 12 45 45 H 1.08998 * 113.57481 * 333.20235 * 14 13 12 46 46 H 0.97002 * 120.00334 * 354.79370 * 19 18 16 47 47 H 1.09000 * 113.51113 * 88.24557 * 24 15 14 48 48 H 1.08993 * 113.51222 * 218.81646 * 24 15 14 49 49 H 1.08000 * 126.54032 * 0.07874 * 26 25 13 50 50 H 1.08000 * 125.97898 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9431 1.3862 -1.2493 5 6 2.9432 1.3861 1.2492 6 6 3.9374 0.2232 1.2491 7 6 1.0842 2.4506 0.0006 8 8 1.0896 3.2525 0.9104 9 7 0.2023 2.5837 -1.0098 10 6 -0.7494 3.6976 -1.0094 11 1 -1.0775 3.9170 0.0066 12 6 -1.9639 3.3753 -1.9128 13 6 -2.2531 4.7471 -2.5350 14 6 -3.4939 5.4644 -2.0150 15 7 -3.7380 5.9177 -3.3946 16 6 -4.3728 6.9780 -3.9843 17 1 -4.7406 7.7925 -3.3778 18 6 -4.5438 7.0062 -5.3615 19 7 -5.2470 7.9697 -5.9178 20 14 -3.7757 5.6766 -6.4254 21 1 -4.2041 5.8617 -7.8352 22 1 -2.2959 5.7689 -6.3415 23 1 -4.2165 4.3423 -5.9452 24 6 -3.0063 4.7286 -3.8632 25 7 -1.0020 5.4996 -2.4987 26 6 -0.3811 6.6014 -3.0323 27 6 0.8470 6.6617 -2.4866 28 7 0.9773 5.6292 -1.6428 29 6 -0.1269 4.9272 -1.6426 30 1 -0.5400 0.9354 0.0004 31 1 -0.5399 -0.9353 0.0004 32 1 1.8500 -0.9354 -0.0004 33 1 3.4877 2.3304 -1.2495 34 1 3.6514 0.5577 -1.2493 35 1 2.3163 1.3285 -2.1392 36 1 3.4878 2.3303 1.2495 37 1 2.3165 1.3283 2.1393 38 1 3.3925 -0.7208 1.2491 39 1 4.5641 0.2810 0.3591 40 1 4.5638 0.2807 2.1393 41 1 0.1982 1.9425 -1.7376 42 1 -2.8106 3.0281 -1.3206 43 1 -1.6993 2.6464 -2.6787 44 1 -3.2691 6.2766 -1.3238 45 1 -4.2614 4.7891 -1.6370 46 1 -5.7085 8.6167 -5.3616 47 1 -3.6397 3.8509 -3.9916 48 1 -2.3711 4.9216 -4.7277 49 1 -0.7986 7.2886 -3.7533 50 1 1.5968 7.4113 -2.6925 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101642452.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:55:40 Heat of formation + Delta-G solvation = 107.998037 kcal Electronic energy + Delta-G solvation = -31475.442459 eV Core-core repulsion = 27506.308966 eV Total energy + Delta-G solvation = -3969.133493 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.74796 -41.46261 -40.42229 -37.68278 -36.93272 -35.11721 -33.99450 -32.90607 -31.79793 -30.30354 -30.03762 -28.87897 -27.39970 -26.43141 -25.60894 -23.25731 -22.93172 -22.80001 -22.44133 -21.26834 -20.48488 -19.91143 -19.58625 -17.99374 -17.86512 -17.27331 -16.78627 -16.59761 -16.17553 -16.02781 -15.79531 -15.51086 -15.30593 -15.19153 -15.10309 -14.91390 -14.62124 -14.31656 -14.24033 -13.84849 -13.63382 -13.53862 -13.29615 -13.02878 -12.91752 -12.79099 -12.60397 -12.54566 -12.45528 -12.43052 -12.18237 -11.73191 -11.42781 -11.34321 -11.30828 -11.14291 -10.98363 -10.70825 -10.48308 -10.33465 -10.18196 -9.43739 -9.35309 -8.68918 -5.56857 0.94179 1.30898 1.41297 1.41585 1.55081 1.60633 1.71643 1.93470 2.25666 2.48376 2.65801 2.89292 3.09869 3.14513 3.37877 3.52366 3.70937 3.76866 3.90538 4.00165 4.08213 4.10801 4.19652 4.38312 4.46632 4.47679 4.51323 4.52357 4.53622 4.63606 4.65989 4.70819 4.73293 4.79640 4.88733 4.91089 5.02202 5.05504 5.13040 5.15668 5.22195 5.31319 5.36359 5.37412 5.53580 5.74417 5.80568 5.85735 5.86190 6.07876 6.47624 6.59977 7.08302 7.22195 7.23651 8.11902 8.82389 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.020165 B = 0.003003 C = 0.002881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.202980 B = 9321.413795 C = 9717.298096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.145 4.145 3 C -0.045 4.045 4 C -0.137 4.137 5 C -0.097 4.097 6 C -0.148 4.148 7 C 0.528 3.472 8 O -0.569 6.569 9 N -0.702 5.702 10 C 0.235 3.765 11 H 0.111 0.889 12 C -0.098 4.098 13 C 0.123 3.877 14 C 0.121 3.879 15 N -0.655 5.655 16 C -0.289 4.289 17 H 0.044 0.956 18 C -0.081 4.081 19 N -0.968 5.968 20 Si 1.106 2.894 21 H -0.306 1.306 22 H -0.284 1.284 23 H -0.241 1.241 24 C 0.094 3.906 25 N -0.446 5.446 26 C -0.030 4.030 27 C -0.038 4.038 28 N -0.499 5.499 29 C 0.164 3.836 30 H 0.098 0.902 31 H 0.122 0.878 32 H 0.144 0.856 33 H 0.044 0.956 34 H 0.095 0.905 35 H 0.068 0.932 36 H 0.047 0.953 37 H 0.054 0.946 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.057 0.943 41 H 0.418 0.582 42 H 0.153 0.847 43 H 0.130 0.870 44 H 0.033 0.967 45 H 0.102 0.898 46 H 0.246 0.754 47 H 0.104 0.896 48 H 0.048 0.952 49 H 0.156 0.844 50 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.684 -24.362 10.827 30.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.163 4.163 3 C -0.048 4.048 4 C -0.194 4.194 5 C -0.135 4.135 6 C -0.205 4.205 7 C 0.316 3.684 8 O -0.446 6.446 9 N -0.356 5.356 10 C 0.126 3.874 11 H 0.128 0.872 12 C -0.137 4.137 13 C 0.036 3.964 14 C -0.005 4.005 15 N -0.384 5.384 16 C -0.417 4.417 17 H 0.062 0.938 18 C -0.273 4.273 19 N -0.613 5.613 20 Si 0.931 3.069 21 H -0.234 1.234 22 H -0.211 1.211 23 H -0.165 1.165 24 C -0.030 4.030 25 N -0.129 5.129 26 C -0.163 4.163 27 C -0.185 4.185 28 N -0.218 5.218 29 C -0.100 4.100 30 H 0.116 0.884 31 H 0.140 0.860 32 H 0.162 0.838 33 H 0.063 0.937 34 H 0.114 0.886 35 H 0.087 0.913 36 H 0.066 0.934 37 H 0.073 0.927 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.076 0.924 41 H 0.257 0.743 42 H 0.171 0.829 43 H 0.149 0.851 44 H 0.051 0.949 45 H 0.120 0.880 46 H 0.055 0.945 47 H 0.121 0.879 48 H 0.066 0.934 49 H 0.173 0.827 50 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 15.295 -24.154 10.162 30.341 hybrid contribution -1.329 2.419 0.608 2.826 sum 13.966 -21.734 10.770 27.990 Atomic orbital electron populations 1.24459 0.96166 1.03599 0.99463 1.22792 0.95828 0.96391 1.01253 1.20008 0.94484 0.91347 0.98957 1.21884 0.99727 1.03041 0.94752 1.21305 0.97199 0.99576 0.95413 1.21864 0.98560 0.97554 1.02543 1.21045 0.80499 0.85985 0.80860 1.90714 1.70844 1.45304 1.37722 1.46003 1.35429 1.28188 1.25946 1.19988 0.87488 0.79979 0.99904 0.87172 1.22970 0.97987 0.93138 0.99589 1.22266 0.82886 0.91727 0.99472 1.22918 0.93118 0.96463 0.87957 1.46029 1.66003 1.22594 1.03761 1.19875 1.32666 0.96782 0.92354 0.93758 1.27077 1.00064 1.04118 0.96035 1.71014 1.34672 1.18204 1.37428 0.83336 0.74893 0.74774 0.73855 1.23437 1.21096 1.16514 1.23286 0.92919 0.91719 0.95112 1.45878 1.13569 1.20694 1.32732 1.22480 0.95001 0.93559 1.05249 1.22584 0.96603 0.99958 0.99369 1.69805 1.23807 1.06613 1.21558 1.25357 0.87805 1.00046 0.96835 0.88353 0.85954 0.83807 0.93678 0.88606 0.91279 0.93385 0.92732 0.90926 0.91364 0.92364 0.74304 0.82931 0.85150 0.94853 0.88047 0.94482 0.87892 0.93415 0.82653 0.79223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.98 13.17 67.78 0.89 -1.09 16 2 C -0.14 -1.49 7.99 25.64 0.20 -1.29 16 3 C -0.04 -0.71 0.62 -53.67 -0.03 -0.74 16 4 C -0.14 -1.83 8.00 71.98 0.58 -1.26 16 5 C -0.10 -1.70 4.27 30.59 0.13 -1.57 16 6 C -0.15 -1.59 9.30 71.98 0.67 -0.92 16 7 C 0.53 12.09 5.33 87.66 0.47 12.56 16 8 O -0.57 -18.65 15.69 -3.02 -0.05 -18.70 16 9 N -0.70 -12.89 3.33 -441.75 -1.47 -14.36 16 10 C 0.23 5.30 3.23 45.15 0.15 5.45 16 11 H 0.11 2.71 7.66 -2.39 -0.02 2.69 16 12 C -0.10 -1.60 6.24 31.33 0.20 -1.40 16 13 C 0.12 3.54 1.64 3.93 0.01 3.54 16 14 C 0.12 4.09 8.18 83.47 0.68 4.77 16 15 N -0.66 -29.13 3.70 -738.32 -2.73 -31.86 16 16 C -0.29 -16.30 11.08 84.03 0.93 -15.37 16 17 H 0.04 2.77 8.06 -2.91 -0.02 2.75 16 18 C -0.08 -4.71 5.50 84.86 0.47 -4.24 16 19 N -0.97 -61.79 13.70 21.65 0.30 -61.50 16 20 Si 1.11 50.76 25.17 68.60 1.73 52.48 16 21 H -0.31 -14.72 7.11 99.48 0.71 -14.01 16 22 H -0.28 -12.40 6.49 99.48 0.65 -11.75 16 23 H -0.24 -9.18 6.18 99.48 0.61 -8.56 16 24 C 0.09 3.25 5.23 83.55 0.44 3.68 16 25 N -0.45 -15.31 3.42 -473.27 -1.62 -16.93 16 26 C -0.03 -1.12 12.03 82.99 1.00 -0.12 16 27 C -0.04 -1.33 11.86 83.52 0.99 -0.34 16 28 N -0.50 -18.54 11.25 -187.08 -2.10 -20.65 16 29 C 0.16 5.32 8.22 138.30 1.14 6.46 16 30 H 0.10 1.21 5.18 -2.91 -0.02 1.19 16 31 H 0.12 0.77 8.06 -2.91 -0.02 0.74 16 32 H 0.14 0.86 7.00 -2.91 -0.02 0.84 16 33 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.10 0.83 6.43 -2.39 -0.02 0.81 16 35 H 0.07 0.80 7.57 -2.39 -0.02 0.78 16 36 H 0.05 1.06 8.10 -2.39 -0.02 1.04 16 37 H 0.05 1.10 8.10 -2.39 -0.02 1.08 16 38 H 0.07 0.56 6.62 -2.39 -0.02 0.54 16 39 H 0.07 0.61 6.43 -2.39 -0.02 0.59 16 40 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 41 H 0.42 5.11 7.15 -92.71 -0.66 4.44 16 42 H 0.15 1.39 7.87 -2.39 -0.02 1.37 16 43 H 0.13 1.36 7.80 -2.39 -0.02 1.35 16 44 H 0.03 1.25 8.14 -2.39 -0.02 1.24 16 45 H 0.10 2.68 7.98 -2.39 -0.02 2.66 16 46 H 0.25 15.88 8.73 -92.71 -0.81 15.07 16 47 H 0.10 2.89 7.60 -2.39 -0.02 2.87 16 48 H 0.05 1.82 4.80 -2.39 -0.01 1.81 16 49 H 0.16 6.23 8.06 -2.91 -0.02 6.20 16 50 H 0.19 5.56 8.06 -2.91 -0.02 5.54 16 Total: -1.00 -83.76 389.60 3.05 -80.71 By element: Atomic # 1 Polarization: 22.58 SS G_CDS: 0.10 Total: 22.68 kcal Atomic # 6 Polarization: -0.77 SS G_CDS: 8.90 Total: 8.13 kcal Atomic # 7 Polarization: -137.67 SS G_CDS: -7.63 Total: -145.30 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: -0.05 Total: -18.70 kcal Atomic # 14 Polarization: 50.76 SS G_CDS: 1.73 Total: 52.48 kcal Total: -83.76 3.05 -80.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101642452.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.712 kcal (2) G-P(sol) polarization free energy of solvation -83.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds