Wall clock time and date at job start Wed Apr 1 2020 03:55:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.31000 * 1
3 3 C 1.50705 * 120.00413 * 2 1
4 4 C 1.52992 * 109.47211 * 124.99722 * 3 2 1
5 5 C 1.53000 * 109.47119 * 60.00385 * 4 3 2
6 6 C 1.53001 * 109.47580 * 300.00479 * 4 3 2
7 7 C 1.50705 * 109.47211 * 179.97438 * 4 3 2
8 8 O 1.21276 * 119.99674 * 0.02562 * 7 4 3
9 9 N 1.34770 * 119.99828 * 179.97438 * 7 4 3
10 10 C 1.46509 * 119.99627 * 180.02562 * 9 7 4
11 11 H 1.09002 * 110.51646 * 36.11103 * 10 9 7
12 12 C 1.54735 * 110.46400 * 158.66206 * 10 9 7
13 13 C 1.53512 * 101.49394 * 94.39524 * 12 10 9
14 14 C 1.53036 * 115.28948 * 254.69297 * 13 12 10
15 15 N 1.47755 * 85.82525 * 220.08122 * 14 13 12
16 16 C 1.36942 * 134.41325 * 203.96931 * 15 14 13
17 17 H 1.07996 * 119.99716 * 173.51342 * 16 15 14
18 18 C 1.38810 * 119.99735 * 353.50870 * 16 15 14
19 19 N 1.31620 * 120.00167 * 5.08923 * 18 16 15
20 20 Si 1.86799 * 119.99829 * 185.08343 * 18 16 15
21 21 H 1.48504 * 109.46996 * 94.98777 * 20 18 16
22 22 H 1.48500 * 109.47369 * 214.99062 * 20 18 16
23 23 H 1.48501 * 109.47005 * 334.99033 * 20 18 16
24 24 C 1.47754 * 91.17401 * 23.97492 * 15 14 13
25 25 N 1.46160 * 106.64554 * 24.92413 * 13 12 10
26 26 C 1.37267 * 142.22018 * 163.53246 * 25 13 12
27 27 C 1.34523 * 106.91472 * 180.02562 * 26 25 13
28 28 N 1.33983 * 108.04710 * 359.79257 * 27 26 25
29 29 C 1.30859 * 109.34600 * 0.31939 * 28 27 26
30 30 H 1.07994 * 119.99535 * 0.02562 * 1 2 3
31 31 H 1.07996 * 120.00079 * 180.02562 * 1 2 3
32 32 H 1.08003 * 120.00127 * 179.97438 * 2 1 3
33 33 H 1.09004 * 109.46435 * 4.99954 * 3 2 1
34 34 H 1.09000 * 109.47055 * 245.00058 * 3 2 1
35 35 H 1.09001 * 109.47334 * 180.02562 * 5 4 3
36 36 H 1.09007 * 109.47347 * 299.99651 * 5 4 3
37 37 H 1.09000 * 109.47197 * 59.99632 * 5 4 3
38 38 H 1.09005 * 109.46447 * 299.99879 * 6 4 3
39 39 H 1.09000 * 109.46965 * 59.99532 * 6 4 3
40 40 H 1.08992 * 109.47490 * 180.02562 * 6 4 3
41 41 H 0.97001 * 120.00482 * 0.02562 * 9 7 4
42 42 H 1.08996 * 111.01866 * 212.44554 * 12 10 9
43 43 H 1.09002 * 111.02200 * 336.30439 * 12 10 9
44 44 H 1.09003 * 113.81756 * 334.30864 * 14 13 12
45 45 H 1.08995 * 113.81349 * 105.85535 * 14 13 12
46 46 H 0.97002 * 119.99537 * 179.97438 * 19 18 16
47 47 H 1.09004 * 113.81383 * 221.79859 * 24 15 14
48 48 H 1.08998 * 113.81972 * 90.25388 * 24 15 14
49 49 H 1.08001 * 126.53962 * 0.07795 * 26 25 13
50 50 H 1.07996 * 125.97378 * 180.02562 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3100 0.0000 0.0000
3 6 2.0636 1.3051 0.0000
4 6 3.0351 1.3331 1.1816
5 6 4.0245 0.1729 1.0559
6 6 2.2522 1.1962 2.4890
7 6 3.7891 2.6379 1.1812
8 8 3.5706 3.4642 0.3209
9 7 4.7055 2.8868 2.1376
10 6 5.4381 4.1556 2.1375
11 1 4.7928 4.9693 1.8066
12 6 6.0047 4.4532 3.5463
13 6 7.4248 3.8814 3.4320
14 6 7.6549 2.5530 4.1563
15 7 8.9650 3.1155 4.5442
16 6 10.1700 2.5758 4.9076
17 1 11.0278 3.2164 5.0495
18 6 10.2888 1.2053 5.0935
19 7 9.2721 0.4140 4.8241
20 14 11.8917 0.4841 5.7260
21 1 11.8130 0.3198 7.1998
22 1 12.1235 -0.8387 5.0921
23 1 13.0127 1.3978 5.3889
24 6 8.4554 4.4930 4.3834
25 7 7.7720 3.9036 2.0124
26 6 8.8414 3.8220 1.1557
27 6 8.3520 3.9300 -0.0927
28 7 7.0221 4.0689 -0.0065
29 6 6.6658 4.0582 1.2526
30 1 -0.5399 0.9353 -0.0004
31 1 -0.5400 -0.9353 0.0004
32 1 1.8500 -0.9353 0.0004
33 1 1.3586 2.1316 0.0896
34 1 2.6214 1.4025 -0.9314
35 1 4.7164 0.1925 1.8980
36 1 3.4795 -0.7712 1.0559
37 1 4.5823 0.2703 0.1245
38 1 1.5473 2.0228 2.5785
39 1 1.7071 0.2522 2.4889
40 1 2.9442 1.2166 3.3308
41 1 4.8800 2.2260 2.8260
42 1 6.0295 5.5257 3.7392
43 1 5.4338 3.9328 4.3153
44 1 6.9808 2.3873 4.9967
45 1 7.7249 1.6942 3.4888
46 1 9.3553 -0.5437 4.9538
47 1 9.1584 5.1682 3.8955
48 1 8.0221 4.9109 5.2920
49 1 9.8779 3.6946 1.4313
50 1 8.9295 3.9049 -1.0049
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001101646509.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:55:52
Heat of formation + Delta-G solvation = 113.028409 kcal
Electronic energy + Delta-G solvation = -31511.942918 eV
Core-core repulsion = 27543.027558 eV
Total energy + Delta-G solvation = -3968.915360 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.195 amu
Computer time = 1.06 seconds
Orbital eigenvalues (eV)
-42.22111 -40.11150 -38.49809 -36.77413 -35.45847 -33.44986 -32.73353 -31.68308
-30.43846 -28.29301 -27.47938 -27.32800 -26.70203 -25.38089 -24.73087 -23.03487
-21.76486 -21.29597 -20.25183 -19.86340 -18.93123 -18.67292 -17.03151 -16.83686
-16.56970 -15.54856 -15.28047 -15.17183 -14.97873 -14.60227 -14.30535 -14.13676
-14.00167 -13.91055 -13.57919 -13.44153 -13.26014 -13.10217 -12.70470 -12.40590
-12.37203 -12.24484 -12.15979 -11.98519 -11.78415 -11.73762 -11.37240 -11.21043
-11.06926 -11.01084 -10.92889 -10.67407 -10.41838 -10.03962 -9.81710 -9.60307
-9.45068 -9.41734 -9.15618 -9.02459 -8.91637 -7.92543 -7.15529 -5.99927
-3.33071 2.12443 2.42013 2.76487 3.14973 3.23637 3.27438 3.32628
3.34612 3.73944 4.06882 4.27603 4.48101 4.56111 4.61390 4.75841
4.77864 4.80385 4.96819 4.98938 5.08600 5.14971 5.33423 5.46101
5.49434 5.54024 5.57727 5.63435 5.70797 5.74669 5.75733 5.76638
5.78571 5.86972 5.96619 5.98820 6.10292 6.12889 6.17204 6.17936
6.21389 6.46223 6.50520 6.64013 6.69972 6.85735 6.92927 7.24512
7.31738 7.53019 7.63282 7.73649 8.32658 8.61460 8.81172 9.48173
10.29811 11.17478
Molecular weight = 344.20amu
Principal moments of inertia in cm(-1)
A = 0.012397 B = 0.003361 C = 0.002981
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2258.033300 B = 8327.748014 C = 9389.966673
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.199 4.199
2 C -0.145 4.145
3 C -0.071 4.071
4 C -0.074 4.074
5 C -0.144 4.144
6 C -0.140 4.140
7 C 0.527 3.473
8 O -0.526 6.526
9 N -0.715 5.715
10 C 0.232 3.768
11 H 0.111 0.889
12 C -0.123 4.123
13 C 0.099 3.901
14 C 0.171 3.829
15 N -0.604 5.604
16 C -0.231 4.231
17 H 0.082 0.918
18 C 0.000 4.000
19 N -0.917 5.917
20 Si 0.912 3.088
21 H -0.287 1.287
22 H -0.289 1.289
23 H -0.279 1.279
24 C 0.120 3.880
25 N -0.429 5.429
26 C 0.001 3.999
27 C -0.046 4.046
28 N -0.466 5.466
29 C 0.157 3.843
30 H 0.095 0.905
31 H 0.095 0.905
32 H 0.110 0.890
33 H 0.074 0.926
34 H 0.080 0.920
35 H 0.064 0.936
36 H 0.069 0.931
37 H 0.062 0.938
38 H 0.060 0.940
39 H 0.069 0.931
40 H 0.062 0.938
41 H 0.403 0.597
42 H 0.101 0.899
43 H 0.106 0.894
44 H 0.048 0.952
45 H 0.076 0.924
46 H 0.256 0.744
47 H 0.052 0.948
48 H 0.055 0.945
49 H 0.168 0.832
50 H 0.168 0.832
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.093 2.315 -3.504 14.705
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.236 4.236
2 C -0.163 4.163
3 C -0.108 4.108
4 C -0.078 4.078
5 C -0.201 4.201
6 C -0.197 4.197
7 C 0.313 3.687
8 O -0.400 6.400
9 N -0.368 5.368
10 C 0.125 3.875
11 H 0.129 0.871
12 C -0.162 4.162
13 C 0.013 3.987
14 C 0.045 3.955
15 N -0.331 5.331
16 C -0.358 4.358
17 H 0.100 0.900
18 C -0.198 4.198
19 N -0.562 5.562
20 Si 0.742 3.258
21 H -0.214 1.214
22 H -0.215 1.215
23 H -0.205 1.205
24 C -0.006 4.006
25 N -0.111 5.111
26 C -0.134 4.134
27 C -0.195 4.195
28 N -0.185 5.185
29 C -0.106 4.106
30 H 0.113 0.887
31 H 0.113 0.887
32 H 0.128 0.872
33 H 0.092 0.908
34 H 0.099 0.901
35 H 0.083 0.917
36 H 0.088 0.912
37 H 0.081 0.919
38 H 0.079 0.921
39 H 0.088 0.912
40 H 0.081 0.919
41 H 0.239 0.761
42 H 0.119 0.881
43 H 0.125 0.875
44 H 0.065 0.935
45 H 0.095 0.905
46 H 0.066 0.934
47 H 0.070 0.930
48 H 0.073 0.927
49 H 0.186 0.814
50 H 0.185 0.815
Dipole moment (debyes) X Y Z Total
from point charges -14.383 2.708 -4.532 15.321
hybrid contribution 1.890 -1.047 1.415 2.582
sum -12.493 1.661 -3.117 12.982
Atomic orbital electron populations
1.23823 0.95919 1.01660 1.02173 1.22991 0.95935 0.98486 0.98890
1.20597 0.97375 0.95338 0.97517 1.20734 0.95994 0.93273 0.97771
1.21920 0.98288 0.96820 1.03085 1.21882 1.00082 1.02880 0.94901
1.20516 0.79146 0.88387 0.80622 1.90717 1.65571 1.47675 1.36061
1.46004 1.40048 1.19477 1.31274 1.19650 0.88203 0.87972 0.91678
0.87088 1.22849 0.94359 1.03350 0.95653 1.22974 0.93653 1.02739
0.79377 1.22469 0.86627 0.92062 0.94337 1.45942 1.07434 0.99267
1.80437 1.18972 0.85366 0.90829 1.40664 0.90014 1.24813 0.97959
0.95883 1.01116 1.69792 1.30343 1.03514 1.52585 0.86106 0.82399
0.78629 0.78668 1.21424 1.21549 1.20467 1.22761 0.92594 0.90644
0.94616 1.45791 1.07630 1.50716 1.06913 1.22410 0.93308 1.08825
0.88828 1.22182 0.90559 1.10463 0.96283 1.69793 1.12755 1.19165
1.16776 1.24435 0.90033 1.08207 0.87960 0.88674 0.88695 0.87211
0.90763 0.90121 0.91740 0.91235 0.91906 0.92128 0.91176 0.91945
0.76087 0.88101 0.87526 0.93458 0.90534 0.93386 0.93015 0.92720
0.81433 0.81457
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.20 -1.62 14.32 29.01 0.42 -1.21 16
2 C -0.15 -1.30 7.65 -36.02 -0.28 -1.58 16
3 C -0.07 -0.77 4.02 -27.88 -0.11 -0.88 16
4 C -0.07 -0.82 0.64 -155.66 -0.10 -0.92 16
5 C -0.14 -1.57 8.11 37.16 0.30 -1.27 16
6 C -0.14 -1.24 8.13 37.16 0.30 -0.94 16
7 C 0.53 7.46 6.47 -10.99 -0.07 7.39 16
8 O -0.53 -9.35 15.69 5.56 0.09 -9.26 16
9 N -0.72 -9.48 4.91 -53.58 -0.26 -9.74 16
10 C 0.23 3.35 3.23 -67.70 -0.22 3.13 16
11 H 0.11 1.60 7.67 -51.93 -0.40 1.20 16
12 C -0.12 -1.51 6.12 -25.55 -0.16 -1.67 16
13 C 0.10 1.66 1.55 -136.72 -0.21 1.45 16
14 C 0.17 3.52 6.88 -3.34 -0.02 3.49 16
15 N -0.60 -13.98 3.70 -182.65 -0.68 -14.65 16
16 C -0.23 -6.03 10.69 -15.06 -0.16 -6.19 16
17 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16
18 C 0.00 -0.01 5.50 -17.43 -0.10 -0.10 16
19 N -0.92 -25.33 11.52 55.49 0.64 -24.69 16
20 Si 0.91 21.10 29.56 -169.99 -5.02 16.08 16
21 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16
22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16
23 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16
24 C 0.12 2.19 8.45 -3.35 -0.03 2.16 16
25 N -0.43 -7.90 3.37 -103.51 -0.35 -8.25 16
26 C 0.00 0.01 12.03 -16.43 -0.20 -0.18 16
27 C -0.05 -0.84 11.86 -17.93 -0.21 -1.06 16
28 N -0.47 -9.34 11.25 -10.50 -0.12 -9.45 16
29 C 0.16 2.86 8.21 -154.60 -1.27 1.59 16
30 H 0.09 0.75 7.84 -52.49 -0.41 0.34 16
31 H 0.09 0.66 8.06 -52.49 -0.42 0.23 16
32 H 0.11 0.91 6.80 -52.48 -0.36 0.55 16
33 H 0.07 0.84 7.75 -51.93 -0.40 0.44 16
34 H 0.08 1.00 8.10 -51.93 -0.42 0.58 16
35 H 0.06 0.73 7.57 -51.93 -0.39 0.34 16
36 H 0.07 0.63 6.53 -51.93 -0.34 0.29 16
37 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16
38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16
39 H 0.07 0.56 7.22 -51.93 -0.37 0.19 16
40 H 0.06 0.51 7.56 -51.93 -0.39 0.12 16
41 H 0.40 4.81 7.40 -40.82 -0.30 4.50 16
42 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16
43 H 0.11 1.08 7.73 -51.93 -0.40 0.68 16
44 H 0.05 0.94 7.95 -51.93 -0.41 0.52 16
45 H 0.08 1.84 7.39 -51.93 -0.38 1.46 16
46 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16
47 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16
48 H 0.06 0.89 8.13 -51.93 -0.42 0.47 16
49 H 0.17 3.08 8.06 -52.49 -0.42 2.66 16
50 H 0.17 2.54 8.06 -52.49 -0.42 2.11 16
LS Contribution 403.69 15.07 6.08 6.08
Total: -1.00 -33.02 403.69 -9.65 -42.67
By element:
Atomic # 1 Polarization: 15.93 SS G_CDS: -7.92 Total: 8.01 kcal
Atomic # 6 Polarization: 5.32 SS G_CDS: -2.11 Total: 3.21 kcal
Atomic # 7 Polarization: -66.02 SS G_CDS: -0.77 Total: -66.79 kcal
Atomic # 8 Polarization: -9.35 SS G_CDS: 0.09 Total: -9.26 kcal
Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal
Total LS contribution 6.08 Total: 6.08 kcal
Total: -33.02 -9.65 -42.67 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001101646509.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 155.699 kcal
(2) G-P(sol) polarization free energy of solvation -33.019 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.681 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.652 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.671 kcal
(6) G-S(sol) free energy of system = (1) + (5) 113.028 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.06 seconds