Wall clock time and date at job start Wed Apr 1 2020 03:55:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.31000 * 1
3 3 C 1.50705 * 120.00413 * 2 1
4 4 C 1.52992 * 109.47211 * 124.99722 * 3 2 1
5 5 C 1.53000 * 109.47119 * 60.00385 * 4 3 2
6 6 C 1.53001 * 109.47580 * 300.00479 * 4 3 2
7 7 C 1.50705 * 109.47211 * 179.97438 * 4 3 2
8 8 O 1.21276 * 119.99674 * 0.02562 * 7 4 3
9 9 N 1.34770 * 119.99828 * 179.97438 * 7 4 3
10 10 C 1.46509 * 119.99627 * 180.02562 * 9 7 4
11 11 H 1.09002 * 110.51646 * 36.11103 * 10 9 7
12 12 C 1.54735 * 110.46400 * 158.66206 * 10 9 7
13 13 C 1.53512 * 101.49394 * 94.39524 * 12 10 9
14 14 C 1.53036 * 115.28948 * 254.69297 * 13 12 10
15 15 N 1.47755 * 85.82525 * 220.08122 * 14 13 12
16 16 C 1.36942 * 134.41325 * 203.96931 * 15 14 13
17 17 H 1.07996 * 119.99716 * 173.51342 * 16 15 14
18 18 C 1.38810 * 119.99735 * 353.50870 * 16 15 14
19 19 N 1.31620 * 120.00167 * 5.08923 * 18 16 15
20 20 Si 1.86799 * 119.99829 * 185.08343 * 18 16 15
21 21 H 1.48504 * 109.46996 * 94.98777 * 20 18 16
22 22 H 1.48500 * 109.47369 * 214.99062 * 20 18 16
23 23 H 1.48501 * 109.47005 * 334.99033 * 20 18 16
24 24 C 1.47754 * 91.17401 * 23.97492 * 15 14 13
25 25 N 1.46160 * 106.64554 * 24.92413 * 13 12 10
26 26 C 1.37267 * 142.22018 * 163.53246 * 25 13 12
27 27 C 1.34523 * 106.91472 * 180.02562 * 26 25 13
28 28 N 1.33983 * 108.04710 * 359.79257 * 27 26 25
29 29 C 1.30859 * 109.34600 * 0.31939 * 28 27 26
30 30 H 1.07994 * 119.99535 * 0.02562 * 1 2 3
31 31 H 1.07996 * 120.00079 * 180.02562 * 1 2 3
32 32 H 1.08003 * 120.00127 * 179.97438 * 2 1 3
33 33 H 1.09004 * 109.46435 * 4.99954 * 3 2 1
34 34 H 1.09000 * 109.47055 * 245.00058 * 3 2 1
35 35 H 1.09001 * 109.47334 * 180.02562 * 5 4 3
36 36 H 1.09007 * 109.47347 * 299.99651 * 5 4 3
37 37 H 1.09000 * 109.47197 * 59.99632 * 5 4 3
38 38 H 1.09005 * 109.46447 * 299.99879 * 6 4 3
39 39 H 1.09000 * 109.46965 * 59.99532 * 6 4 3
40 40 H 1.08992 * 109.47490 * 180.02562 * 6 4 3
41 41 H 0.97001 * 120.00482 * 0.02562 * 9 7 4
42 42 H 1.08996 * 111.01866 * 212.44554 * 12 10 9
43 43 H 1.09002 * 111.02200 * 336.30439 * 12 10 9
44 44 H 1.09003 * 113.81756 * 334.30864 * 14 13 12
45 45 H 1.08995 * 113.81349 * 105.85535 * 14 13 12
46 46 H 0.97002 * 119.99537 * 179.97438 * 19 18 16
47 47 H 1.09004 * 113.81383 * 221.79859 * 24 15 14
48 48 H 1.08998 * 113.81972 * 90.25388 * 24 15 14
49 49 H 1.08001 * 126.53962 * 0.07795 * 26 25 13
50 50 H 1.07996 * 125.97378 * 180.02562 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3100 0.0000 0.0000
3 6 2.0636 1.3051 0.0000
4 6 3.0351 1.3331 1.1816
5 6 4.0245 0.1729 1.0559
6 6 2.2522 1.1962 2.4890
7 6 3.7891 2.6379 1.1812
8 8 3.5706 3.4642 0.3209
9 7 4.7055 2.8868 2.1376
10 6 5.4381 4.1556 2.1375
11 1 4.7928 4.9693 1.8066
12 6 6.0047 4.4532 3.5463
13 6 7.4248 3.8814 3.4320
14 6 7.6549 2.5530 4.1563
15 7 8.9650 3.1155 4.5442
16 6 10.1700 2.5758 4.9076
17 1 11.0278 3.2164 5.0495
18 6 10.2888 1.2053 5.0935
19 7 9.2721 0.4140 4.8241
20 14 11.8917 0.4841 5.7260
21 1 11.8130 0.3198 7.1998
22 1 12.1235 -0.8387 5.0921
23 1 13.0127 1.3978 5.3889
24 6 8.4554 4.4930 4.3834
25 7 7.7720 3.9036 2.0124
26 6 8.8414 3.8220 1.1557
27 6 8.3520 3.9300 -0.0927
28 7 7.0221 4.0689 -0.0065
29 6 6.6658 4.0582 1.2526
30 1 -0.5399 0.9353 -0.0004
31 1 -0.5400 -0.9353 0.0004
32 1 1.8500 -0.9353 0.0004
33 1 1.3586 2.1316 0.0896
34 1 2.6214 1.4025 -0.9314
35 1 4.7164 0.1925 1.8980
36 1 3.4795 -0.7712 1.0559
37 1 4.5823 0.2703 0.1245
38 1 1.5473 2.0228 2.5785
39 1 1.7071 0.2522 2.4889
40 1 2.9442 1.2166 3.3308
41 1 4.8800 2.2260 2.8260
42 1 6.0295 5.5257 3.7392
43 1 5.4338 3.9328 4.3153
44 1 6.9808 2.3873 4.9967
45 1 7.7249 1.6942 3.4888
46 1 9.3553 -0.5437 4.9538
47 1 9.1584 5.1682 3.8955
48 1 8.0221 4.9109 5.2920
49 1 9.8779 3.6946 1.4313
50 1 8.9295 3.9049 -1.0049
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001101646509.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:55:51
Heat of formation + Delta-G solvation = 93.124454 kcal
Electronic energy + Delta-G solvation = -31512.806018 eV
Core-core repulsion = 27543.027558 eV
Total energy + Delta-G solvation = -3969.778460 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.195 amu
Computer time = 1.01 seconds
Orbital eigenvalues (eV)
-43.61867 -41.20305 -39.99540 -37.74145 -36.74855 -34.84030 -33.88267 -33.22802
-31.71210 -29.83888 -28.86591 -28.26830 -27.54471 -26.93082 -26.17236 -24.18380
-23.11235 -22.86003 -21.26465 -21.13546 -20.13426 -19.79140 -18.83339 -17.95540
-17.71457 -17.05347 -16.59627 -16.31015 -16.23590 -15.91643 -15.62160 -15.52947
-15.30982 -15.05219 -14.82396 -14.76417 -14.52486 -14.20471 -13.78554 -13.73684
-13.52737 -13.30292 -13.24082 -13.20733 -13.09275 -12.97396 -12.84889 -12.57570
-12.36173 -12.06509 -11.96445 -11.81738 -11.79113 -11.71878 -11.53789 -11.02450
-10.86733 -10.70268 -10.43728 -10.29602 -10.14059 -9.36780 -9.00351 -7.98714
-5.30351 1.00504 1.42866 1.43757 1.45314 1.51703 1.61801 1.84691
1.96511 2.40105 2.43624 2.83610 3.12576 3.29654 3.36899 3.53559
3.58626 3.72868 3.77535 3.92036 4.08292 4.23272 4.25655 4.27188
4.36543 4.43079 4.57163 4.61585 4.67853 4.72549 4.73094 4.76950
4.80596 4.82739 4.86938 4.93143 4.98154 5.08820 5.12632 5.15058
5.17958 5.31370 5.34720 5.37520 5.39703 5.49770 5.81209 5.83111
5.90040 5.95955 6.19856 6.47563 6.84671 7.17687 7.22867 7.53328
8.43249 9.17942
Molecular weight = 344.20amu
Principal moments of inertia in cm(-1)
A = 0.012397 B = 0.003361 C = 0.002981
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2258.033300 B = 8327.748014 C = 9389.966673
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.187 4.187
2 C -0.156 4.156
3 C -0.066 4.066
4 C -0.068 4.068
5 C -0.140 4.140
6 C -0.135 4.135
7 C 0.524 3.476
8 O -0.566 6.566
9 N -0.708 5.708
10 C 0.231 3.769
11 H 0.116 0.884
12 C -0.105 4.105
13 C 0.112 3.888
14 C 0.175 3.825
15 N -0.636 5.636
16 C -0.234 4.234
17 H 0.080 0.920
18 C -0.055 4.055
19 N -0.944 5.944
20 Si 0.970 3.030
21 H -0.285 1.285
22 H -0.298 1.298
23 H -0.272 1.272
24 C 0.124 3.876
25 N -0.437 5.437
26 C -0.022 4.022
27 C -0.045 4.045
28 N -0.504 5.504
29 C 0.156 3.844
30 H 0.096 0.904
31 H 0.112 0.888
32 H 0.119 0.881
33 H 0.067 0.933
34 H 0.056 0.944
35 H 0.058 0.942
36 H 0.092 0.908
37 H 0.040 0.960
38 H 0.063 0.937
39 H 0.083 0.917
40 H 0.071 0.929
41 H 0.411 0.589
42 H 0.134 0.866
43 H 0.138 0.862
44 H 0.061 0.939
45 H 0.034 0.966
46 H 0.249 0.751
47 H 0.048 0.952
48 H 0.090 0.910
49 H 0.164 0.836
50 H 0.190 0.810
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.665 2.754 -2.062 16.038
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.224 4.224
2 C -0.174 4.174
3 C -0.104 4.104
4 C -0.071 4.071
5 C -0.198 4.198
6 C -0.193 4.193
7 C 0.311 3.689
8 O -0.443 6.443
9 N -0.360 5.360
10 C 0.124 3.876
11 H 0.134 0.866
12 C -0.143 4.143
13 C 0.027 3.973
14 C 0.049 3.951
15 N -0.363 5.363
16 C -0.362 4.362
17 H 0.098 0.902
18 C -0.249 4.249
19 N -0.592 5.592
20 Si 0.798 3.202
21 H -0.212 1.212
22 H -0.225 1.225
23 H -0.197 1.197
24 C -0.001 4.001
25 N -0.119 5.119
26 C -0.157 4.157
27 C -0.193 4.193
28 N -0.223 5.223
29 C -0.107 4.107
30 H 0.114 0.886
31 H 0.130 0.870
32 H 0.137 0.863
33 H 0.086 0.914
34 H 0.074 0.926
35 H 0.078 0.922
36 H 0.111 0.889
37 H 0.059 0.941
38 H 0.082 0.918
39 H 0.102 0.898
40 H 0.090 0.910
41 H 0.248 0.752
42 H 0.152 0.848
43 H 0.156 0.844
44 H 0.078 0.922
45 H 0.052 0.948
46 H 0.058 0.942
47 H 0.067 0.933
48 H 0.107 0.893
49 H 0.181 0.819
50 H 0.207 0.793
Dipole moment (debyes) X Y Z Total
from point charges -15.948 3.171 -3.069 16.548
hybrid contribution 2.376 -1.131 0.885 2.776
sum -13.572 2.040 -2.184 13.898
Atomic orbital electron populations
1.23999 0.95599 1.02554 1.00219 1.22902 0.96229 0.97655 1.00607
1.20511 0.97090 0.96440 0.96368 1.20739 0.95845 0.91304 0.99254
1.21905 0.98251 0.97993 1.01625 1.21876 1.00088 1.03763 0.93545
1.21127 0.78957 0.88961 0.79837 1.90696 1.66877 1.49216 1.37526
1.45983 1.39391 1.19411 1.31231 1.19843 0.87097 0.88554 0.92132
0.86621 1.22996 0.90776 1.05573 0.94997 1.22838 0.96069 1.00220
0.78193 1.22373 0.86054 0.92331 0.94335 1.46224 1.07507 1.01944
1.80580 1.19242 0.86899 0.91070 1.39036 0.90231 1.25487 1.00666
0.96445 1.02316 1.69942 1.31849 1.03089 1.54278 0.85199 0.79645
0.77416 0.77896 1.21214 1.22460 1.19681 1.22962 0.92630 0.88521
0.96007 1.45983 1.07560 1.50709 1.07610 1.22506 0.93559 1.10136
0.89455 1.22586 0.90324 1.09333 0.97057 1.69806 1.13575 1.20794
1.18159 1.25191 0.91321 1.06498 0.87739 0.88573 0.86989 0.86310
0.91449 0.92573 0.92245 0.88943 0.94126 0.91820 0.89791 0.91029
0.75170 0.84772 0.84423 0.92186 0.94765 0.94184 0.93328 0.89266
0.81867 0.79276
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.19 -2.64 14.32 67.78 0.97 -1.67 16
2 C -0.16 -2.57 7.65 25.65 0.20 -2.38 16
3 C -0.07 -1.44 4.02 29.85 0.12 -1.32 16
4 C -0.07 -1.45 0.64 -52.93 -0.03 -1.48 16
5 C -0.14 -3.01 8.11 71.98 0.58 -2.43 16
6 C -0.14 -2.11 8.13 71.98 0.58 -1.52 16
7 C 0.52 14.62 6.47 87.66 0.57 15.18 16
8 O -0.57 -20.32 15.69 -3.02 -0.05 -20.36 16
9 N -0.71 -17.90 4.91 -441.81 -2.17 -20.07 16
10 C 0.23 6.26 3.23 45.14 0.15 6.41 16
11 H 0.12 3.11 7.67 -2.39 -0.02 3.09 16
12 C -0.10 -2.21 6.12 31.36 0.19 -2.02 16
13 C 0.11 3.58 1.55 5.61 0.01 3.59 16
14 C 0.17 7.07 6.88 86.15 0.59 7.66 16
15 N -0.64 -29.00 3.70 -731.77 -2.71 -31.71 16
16 C -0.23 -12.23 10.69 84.03 0.90 -11.33 16
17 H 0.08 4.06 7.83 -2.91 -0.02 4.03 16
18 C -0.05 -2.95 5.50 84.86 0.47 -2.48 16
19 N -0.94 -53.05 11.52 21.65 0.25 -52.80 16
20 Si 0.97 43.79 29.56 68.60 2.03 45.82 16
21 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16
22 H -0.30 -13.73 7.11 99.48 0.71 -13.02 16
23 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16
24 C 0.12 4.23 8.45 86.14 0.73 4.96 16
25 N -0.44 -15.92 3.37 -481.40 -1.62 -17.54 16
26 C -0.02 -0.86 12.03 82.99 1.00 0.14 16
27 C -0.05 -1.67 11.86 83.51 0.99 -0.68 16
28 N -0.50 -20.36 11.25 -187.12 -2.11 -22.47 16
29 C 0.16 5.62 8.21 138.31 1.14 6.76 16
30 H 0.10 1.34 7.84 -2.91 -0.02 1.32 16
31 H 0.11 1.22 8.06 -2.91 -0.02 1.20 16
32 H 0.12 1.74 6.80 -2.91 -0.02 1.72 16
33 H 0.07 1.52 7.75 -2.38 -0.02 1.50 16
34 H 0.06 1.46 8.10 -2.39 -0.02 1.44 16
35 H 0.06 1.32 7.57 -2.39 -0.02 1.31 16
36 H 0.09 1.54 6.53 -2.38 -0.02 1.52 16
37 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16
38 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16
39 H 0.08 1.10 7.22 -2.39 -0.02 1.09 16
40 H 0.07 0.99 7.56 -2.39 -0.02 0.97 16
41 H 0.41 9.15 7.40 -92.71 -0.69 8.46 16
42 H 0.13 2.07 8.14 -2.39 -0.02 2.05 16
43 H 0.14 2.14 7.73 -2.39 -0.02 2.12 16
44 H 0.06 2.27 7.95 -2.39 -0.02 2.25 16
45 H 0.03 1.67 7.39 -2.39 -0.02 1.66 16
46 H 0.25 13.78 8.31 -92.71 -0.77 13.01 16
47 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16
48 H 0.09 2.52 8.13 -2.39 -0.02 2.50 16
49 H 0.16 6.22 8.06 -2.91 -0.02 6.20 16
50 H 0.19 5.77 8.06 -2.91 -0.02 5.75 16
Total: -1.00 -73.95 403.69 3.02 -70.94
By element:
Atomic # 1 Polarization: 30.53 SS G_CDS: 0.25 Total: 30.79 kcal
Atomic # 6 Polarization: 8.26 SS G_CDS: 9.15 Total: 17.41 kcal
Atomic # 7 Polarization: -136.23 SS G_CDS: -8.36 Total: -144.59 kcal
Atomic # 8 Polarization: -20.32 SS G_CDS: -0.05 Total: -20.36 kcal
Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal
Total: -73.95 3.02 -70.94 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001101646509.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 164.062 kcal
(2) G-P(sol) polarization free energy of solvation -73.955 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.108 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.017 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.938 kcal
(6) G-S(sol) free energy of system = (1) + (5) 93.124 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.01 seconds