Wall clock time and date at job start Wed Apr 1 2020 03:39:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.50694 * 109.47046 * 2 1
4 4 N 1.32170 * 120.53811 * 264.51803 * 3 2 1
5 5 C 1.31853 * 120.96964 * 180.02562 * 4 3 2
6 6 N 1.31882 * 122.09495 * 359.97438 * 5 4 3
7 7 C 1.32134 * 120.96582 * 359.70308 * 6 5 4
8 8 C 1.39924 * 120.53900 * 84.53958 * 3 2 1
9 9 C 1.47828 * 120.93938 * 359.97438 * 8 3 2
10 10 O 1.21551 * 120.00148 * 43.21437 * 9 8 3
11 11 N 1.34781 * 119.99711 * 223.22045 * 9 8 3
12 12 C 1.48119 * 127.84634 * 355.26869 * 11 9 8
13 13 C 1.54329 * 104.69275 * 140.25923 * 12 11 9
14 14 H 1.09000 * 111.85563 * 261.52007 * 13 12 11
15 15 C 1.54158 * 108.85730 * 137.44740 * 13 12 11
16 16 C 1.54841 * 104.44204 * 223.73078 * 15 13 12
17 17 C 1.55178 * 102.58093 * 38.17740 * 16 15 13
18 18 C 1.54155 * 104.36100 * 321.84164 * 17 16 15
19 19 C 1.53002 * 112.54994 * 260.79701 * 18 17 16
20 20 N 1.46497 * 109.47590 * 299.76620 * 19 18 17
21 21 C 1.36932 * 120.00386 * 180.02562 * 20 19 18
22 22 H 1.08008 * 119.99860 * 359.97438 * 21 20 19
23 23 C 1.38808 * 120.00062 * 180.02562 * 21 20 19
24 24 N 1.31618 * 120.00088 * 359.97438 * 23 21 20
25 25 Si 1.86806 * 119.99891 * 180.02562 * 23 21 20
26 26 H 1.48497 * 109.47315 * 89.99402 * 25 23 21
27 27 H 1.48503 * 109.46941 * 209.99698 * 25 23 21
28 28 H 1.48501 * 109.47140 * 329.99177 * 25 23 21
29 29 C 1.48116 * 127.83977 * 175.27658 * 11 9 8
30 30 H 1.08997 * 109.47271 * 60.00128 * 1 2 3
31 31 H 1.09004 * 109.46865 * 180.02562 * 1 2 3
32 32 H 1.09006 * 109.47024 * 299.99800 * 1 2 3
33 33 H 1.09005 * 109.46512 * 240.00120 * 2 1 3
34 34 H 1.08997 * 109.47271 * 119.99872 * 2 1 3
35 35 H 1.07994 * 118.95088 * 179.97438 * 5 4 3
36 36 H 1.07997 * 120.53851 * 180.30798 * 7 6 5
37 37 H 1.09000 * 110.38635 * 21.46389 * 12 11 9
38 38 H 1.08994 * 110.39725 * 259.06903 * 12 11 9
39 39 H 1.09009 * 110.46428 * 342.50630 * 15 13 12
40 40 H 1.09002 * 110.46607 * 104.95103 * 15 13 12
41 41 H 1.09001 * 110.76362 * 156.56515 * 16 15 13
42 42 H 1.09005 * 110.75488 * 279.94112 * 16 15 13
43 43 H 1.09001 * 110.44361 * 203.11961 * 17 16 15
44 44 H 1.09001 * 110.44160 * 80.56027 * 17 16 15
45 45 H 1.09009 * 109.46919 * 59.77086 * 19 18 17
46 46 H 1.09004 * 109.47053 * 179.76380 * 19 18 17
47 47 H 0.96998 * 119.99676 * 359.97438 * 20 19 18
48 48 H 0.97002 * 120.00054 * 180.02562 * 24 23 21
49 49 H 1.08996 * 110.39585 * 338.54502 * 29 11 9
50 50 H 1.09003 * 110.39529 * 100.82010 * 29 11 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0323 1.4208 0.0000
4 7 2.3587 2.0177 -1.1332
5 6 2.7995 3.2603 -1.1430
6 7 2.9358 3.9642 -0.0361
7 6 2.6267 3.4480 1.1403
8 6 2.1612 2.1293 1.1997
9 6 1.8088 1.5052 2.4926
10 8 2.1484 0.3621 2.7282
11 7 1.1110 2.2037 3.4100
12 6 0.6954 3.6240 3.3476
13 6 -0.7321 3.6402 3.9339
14 1 -1.4918 3.6414 3.1523
15 6 -0.8721 4.8563 4.8709
16 6 -1.6114 4.3030 6.1139
17 6 -0.9854 2.8928 6.2795
18 6 -0.8047 2.3828 4.8360
19 6 -1.9246 1.4339 4.4044
20 7 -1.9450 0.2673 5.2903
21 6 -2.8690 -0.7243 5.0957
22 1 -3.5832 -0.6461 4.2892
23 6 -2.8885 -1.8293 5.9354
24 7 -2.0186 -1.9243 6.9185
25 14 -4.1487 -3.1824 5.6694
26 1 -3.5910 -4.2039 4.7471
27 1 -4.4759 -3.8171 6.9715
28 1 -5.3811 -2.6019 5.0782
29 6 0.5858 1.7252 4.7097
30 1 -0.3633 0.5138 -0.8900
31 1 -0.3633 -1.0277 0.0005
32 1 -0.3633 0.5138 0.8901
33 1 1.8933 -0.5139 -0.8901
34 1 1.8934 -0.5138 0.8900
35 1 3.0573 3.7161 -2.0875
36 1 2.7363 4.0324 2.0419
37 1 0.6856 3.9717 2.3146
38 1 1.3608 4.2414 3.9509
39 1 0.1103 5.2374 5.1502
40 1 -1.4619 5.6391 4.3939
41 1 -1.4126 4.9218 6.9889
42 1 -2.6827 4.2308 5.9258
43 1 -1.6600 2.2394 6.8328
44 1 -0.0211 2.9611 6.7831
45 1 -2.8822 1.9516 4.4632
46 1 -1.7500 1.1084 3.3789
47 1 -1.3033 0.1970 6.0144
48 1 -2.0320 -2.6967 7.5051
49 1 0.4934 0.6392 4.7054
50 1 1.2354 2.0471 5.5236
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001112579977.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:39:56
Heat of formation + Delta-G solvation = 25.751390 kcal
Electronic energy + Delta-G solvation = -31642.201882 eV
Core-core repulsion = 27669.501907 eV
Total energy + Delta-G solvation = -3972.699975 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.195 amu
Computer time = 0.86 seconds
Orbital eigenvalues (eV)
-41.61239 -40.40143 -38.54332 -35.46431 -34.81161 -34.35578 -33.19524 -31.71688
-31.14801 -29.85628 -29.09269 -26.35203 -25.71307 -25.13269 -24.93225 -23.47391
-22.24216 -22.08237 -20.44444 -19.73898 -18.59791 -18.17811 -17.50014 -17.13559
-16.70029 -16.24351 -15.56346 -15.25891 -15.03266 -14.63342 -14.60695 -14.22316
-14.05950 -13.86309 -13.62244 -13.37433 -13.15407 -13.03924 -12.86302 -12.67123
-12.47905 -12.08013 -11.80221 -11.67362 -11.56719 -11.28989 -11.12255 -11.02661
-10.87316 -10.83544 -10.78286 -10.60461 -10.58415 -10.38848 -10.26313 -9.98168
-9.79210 -9.72737 -9.63912 -9.55311 -8.87477 -8.69943 -6.91257 -5.75600
-3.04029 0.28802 0.72743 2.57380 2.84969 3.44748 3.45680 3.49906
3.51175 3.73197 3.78312 4.07444 4.17516 4.37679 4.56311 4.58783
4.68502 4.71838 4.97034 5.06130 5.11478 5.20827 5.25713 5.28945
5.32802 5.34997 5.48298 5.50938 5.58112 5.60650 5.61131 5.73894
5.83036 5.89426 5.92991 5.95029 6.02978 6.08117 6.10383 6.14084
6.18281 6.25258 6.35576 6.40974 6.45242 6.61429 6.66789 6.73247
6.80055 7.49453 7.70858 7.72135 8.05999 8.42942 9.54662 10.10875
10.45807 11.47126
Molecular weight = 344.20amu
Principal moments of inertia in cm(-1)
A = 0.010452 B = 0.003904 C = 0.003093
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2678.295140 B = 7170.693191 C = 9049.532570
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.140 4.140
2 C -0.098 4.098
3 C 0.236 3.764
4 N -0.520 5.520
5 C 0.309 3.691
6 N -0.527 5.527
7 C 0.178 3.822
8 C -0.228 4.228
9 C 0.587 3.413
10 O -0.517 6.517
11 N -0.611 5.611
12 C 0.098 3.902
13 C -0.097 4.097
14 H 0.089 0.911
15 C -0.116 4.116
16 C -0.121 4.121
17 C -0.113 4.113
18 C -0.072 4.072
19 C 0.175 3.825
20 N -0.728 5.728
21 C -0.239 4.239
22 H 0.068 0.932
23 C -0.011 4.011
24 N -0.932 5.932
25 Si 0.905 3.095
26 H -0.290 1.290
27 H -0.292 1.292
28 H -0.283 1.283
29 C 0.115 3.885
30 H 0.054 0.946
31 H 0.072 0.928
32 H 0.057 0.943
33 H 0.088 0.912
34 H 0.115 0.885
35 H 0.200 0.800
36 H 0.172 0.828
37 H 0.072 0.928
38 H 0.079 0.921
39 H 0.067 0.933
40 H 0.064 0.936
41 H 0.064 0.936
42 H 0.068 0.932
43 H 0.085 0.915
44 H 0.064 0.936
45 H 0.022 0.978
46 H 0.017 0.983
47 H 0.384 0.616
48 H 0.255 0.745
49 H 0.100 0.900
50 H 0.071 0.929
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.112 16.430 -10.433 21.085
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.198 4.198
2 C -0.136 4.136
3 C 0.089 3.911
4 N -0.234 5.234
5 C 0.022 3.978
6 N -0.240 5.240
7 C 0.012 3.988
8 C -0.236 4.236
9 C 0.374 3.626
10 O -0.393 6.393
11 N -0.344 5.344
12 C -0.025 4.025
13 C -0.117 4.117
14 H 0.107 0.893
15 C -0.153 4.153
16 C -0.159 4.159
17 C -0.151 4.151
18 C -0.073 4.073
19 C 0.048 3.952
20 N -0.373 5.373
21 C -0.370 4.370
22 H 0.086 0.914
23 C -0.207 4.207
24 N -0.580 5.580
25 Si 0.736 3.264
26 H -0.217 1.217
27 H -0.218 1.218
28 H -0.208 1.208
29 C -0.007 4.007
30 H 0.073 0.927
31 H 0.091 0.909
32 H 0.076 0.924
33 H 0.107 0.893
34 H 0.133 0.867
35 H 0.217 0.783
36 H 0.189 0.811
37 H 0.091 0.909
38 H 0.097 0.903
39 H 0.086 0.914
40 H 0.083 0.917
41 H 0.083 0.917
42 H 0.087 0.913
43 H 0.104 0.896
44 H 0.083 0.917
45 H 0.040 0.960
46 H 0.035 0.965
47 H 0.219 0.781
48 H 0.065 0.935
49 H 0.119 0.881
50 H 0.090 0.910
Dipole moment (debyes) X Y Z Total
from point charges 8.480 16.064 -11.328 21.408
hybrid contribution -0.629 -0.978 0.791 1.407
sum 7.850 15.086 -10.537 20.006
Atomic orbital electron populations
1.21647 0.92897 1.03316 1.01913 1.20953 0.97397 0.89204 1.06000
1.21946 0.86293 0.96462 0.86377 1.68402 1.13553 1.11907 1.29513
1.25182 0.88922 0.86579 0.97124 1.68449 1.17990 1.38540 0.99070
1.23523 0.88201 0.90468 0.96632 1.21605 1.08063 0.97566 0.96355
1.17295 0.78165 0.85148 0.81990 1.90804 1.53195 1.17104 1.78176
1.48901 1.53614 1.12091 1.19753 1.22833 0.95910 0.82507 1.01276
1.22739 0.95768 0.95240 0.97976 0.89261 1.22442 1.00639 0.96314
0.95945 1.22537 1.00014 0.96245 0.97056 1.22511 1.01296 0.96164
0.95115 1.22262 0.95287 0.94367 0.95415 1.20493 0.93513 0.87656
0.93574 1.42337 1.39997 1.19563 1.35382 1.19172 1.08876 0.97876
1.11097 0.91365 1.24697 0.99263 0.98621 0.98088 1.69646 1.37943
1.30671 1.19747 0.86230 0.80944 0.82386 0.76867 1.21724 1.21802
1.20836 1.22720 0.92689 1.02453 0.82830 0.92670 0.90858 0.92388
0.89322 0.86713 0.78321 0.81099 0.90917 0.90338 0.91432 0.91730
0.91737 0.91313 0.89607 0.91713 0.96031 0.96544 0.78123 0.93522
0.88124 0.91039
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.82 9.89 37.16 0.37 -1.46 16
2 C -0.10 -1.29 5.78 -27.88 -0.16 -1.45 16
3 C 0.24 3.11 6.11 -81.82 -0.50 2.61 16
4 N -0.52 -6.29 10.36 -10.48 -0.11 -6.40 16
5 C 0.31 3.11 12.27 -92.03 -1.13 1.98 16
6 N -0.53 -5.63 10.42 -14.24 -0.15 -5.78 16
7 C 0.18 1.91 9.11 -16.77 -0.15 1.76 16
8 C -0.23 -2.97 5.44 -104.69 -0.57 -3.54 16
9 C 0.59 8.99 7.07 -12.34 -0.09 8.90 16
10 O -0.52 -9.81 14.94 5.32 0.08 -9.73 16
11 N -0.61 -8.39 3.31 -170.55 -0.57 -8.96 16
12 C 0.10 0.99 5.10 -2.46 -0.01 0.98 16
13 C -0.10 -1.09 3.54 -88.30 -0.31 -1.41 16
14 H 0.09 1.03 7.92 -51.93 -0.41 0.62 16
15 C -0.12 -1.07 6.35 -25.16 -0.16 -1.23 16
16 C -0.12 -1.33 6.93 -24.61 -0.17 -1.50 16
17 C -0.11 -1.56 5.71 -24.97 -0.14 -1.70 16
18 C -0.07 -1.06 0.62 -152.19 -0.09 -1.15 16
19 C 0.18 3.38 5.24 -4.04 -0.02 3.35 16
20 N -0.73 -17.66 4.63 -59.91 -0.28 -17.94 16
21 C -0.24 -6.58 9.99 -15.06 -0.15 -6.73 16
22 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16
23 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16
24 N -0.93 -27.82 13.06 55.49 0.72 -27.10 16
25 Si 0.90 22.41 29.55 -169.99 -5.02 17.39 16
26 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16
27 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16
28 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16
29 C 0.11 1.78 5.92 -2.46 -0.01 1.77 16
30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16
31 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16
32 H 0.06 0.86 8.03 -51.93 -0.42 0.44 16
33 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16
34 H 0.11 1.75 5.67 -51.93 -0.29 1.46 16
35 H 0.20 1.25 8.06 -52.49 -0.42 0.82 16
36 H 0.17 1.41 6.73 -52.49 -0.35 1.06 16
37 H 0.07 0.67 6.04 -51.93 -0.31 0.35 16
38 H 0.08 0.64 7.18 -51.93 -0.37 0.26 16
39 H 0.07 0.54 7.18 -51.92 -0.37 0.17 16
40 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16
41 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16
42 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16
43 H 0.09 1.46 7.19 -51.93 -0.37 1.09 16
44 H 0.06 0.82 7.18 -51.93 -0.37 0.44 16
45 H 0.02 0.43 8.14 -51.92 -0.42 0.00 16
46 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16
47 H 0.38 9.76 6.68 -40.82 -0.27 9.49 16
48 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16
49 H 0.10 2.01 7.03 -51.93 -0.37 1.64 16
50 H 0.07 1.01 7.19 -51.93 -0.37 0.63 16
LS Contribution 391.55 15.07 5.90 5.90
Total: -1.00 -32.50 391.55 -10.47 -42.97
By element:
Atomic # 1 Polarization: 16.49 SS G_CDS: -7.64 Total: 8.85 kcal
Atomic # 6 Polarization: 4.21 SS G_CDS: -3.41 Total: 0.80 kcal
Atomic # 7 Polarization: -65.80 SS G_CDS: -0.38 Total: -66.18 kcal
Atomic # 8 Polarization: -9.81 SS G_CDS: 0.08 Total: -9.73 kcal
Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal
Total LS contribution 5.90 Total: 5.90 kcal
Total: -32.50 -10.47 -42.97 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001112579977.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 68.724 kcal
(2) G-P(sol) polarization free energy of solvation -32.504 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.220 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.469 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.972 kcal
(6) G-S(sol) free energy of system = (1) + (5) 25.751 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.86 seconds