Wall clock time and date at job start Wed Apr 1 2020 03:39:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.50694 * 109.47046 * 2 1
4 4 N 1.32170 * 120.53811 * 264.51803 * 3 2 1
5 5 C 1.31853 * 120.96964 * 180.02562 * 4 3 2
6 6 N 1.31882 * 122.09495 * 359.97438 * 5 4 3
7 7 C 1.32134 * 120.96582 * 359.70308 * 6 5 4
8 8 C 1.39924 * 120.53900 * 84.53958 * 3 2 1
9 9 C 1.47828 * 120.93938 * 359.97438 * 8 3 2
10 10 O 1.21551 * 120.00148 * 43.21437 * 9 8 3
11 11 N 1.34781 * 119.99711 * 223.22045 * 9 8 3
12 12 C 1.48119 * 127.84634 * 355.26869 * 11 9 8
13 13 C 1.54329 * 104.69275 * 140.25923 * 12 11 9
14 14 H 1.09000 * 111.85563 * 261.52007 * 13 12 11
15 15 C 1.54158 * 108.85730 * 137.44740 * 13 12 11
16 16 C 1.54841 * 104.44204 * 223.73078 * 15 13 12
17 17 C 1.55178 * 102.58093 * 38.17740 * 16 15 13
18 18 C 1.54155 * 104.36100 * 321.84164 * 17 16 15
19 19 C 1.53002 * 112.54994 * 260.79701 * 18 17 16
20 20 N 1.46497 * 109.47590 * 299.76620 * 19 18 17
21 21 C 1.36932 * 120.00386 * 180.02562 * 20 19 18
22 22 H 1.08008 * 119.99860 * 359.97438 * 21 20 19
23 23 C 1.38808 * 120.00062 * 180.02562 * 21 20 19
24 24 N 1.31618 * 120.00088 * 359.97438 * 23 21 20
25 25 Si 1.86806 * 119.99891 * 180.02562 * 23 21 20
26 26 H 1.48497 * 109.47315 * 89.99402 * 25 23 21
27 27 H 1.48503 * 109.46941 * 209.99698 * 25 23 21
28 28 H 1.48501 * 109.47140 * 329.99177 * 25 23 21
29 29 C 1.48116 * 127.83977 * 175.27658 * 11 9 8
30 30 H 1.08997 * 109.47271 * 60.00128 * 1 2 3
31 31 H 1.09004 * 109.46865 * 180.02562 * 1 2 3
32 32 H 1.09006 * 109.47024 * 299.99800 * 1 2 3
33 33 H 1.09005 * 109.46512 * 240.00120 * 2 1 3
34 34 H 1.08997 * 109.47271 * 119.99872 * 2 1 3
35 35 H 1.07994 * 118.95088 * 179.97438 * 5 4 3
36 36 H 1.07997 * 120.53851 * 180.30798 * 7 6 5
37 37 H 1.09000 * 110.38635 * 21.46389 * 12 11 9
38 38 H 1.08994 * 110.39725 * 259.06903 * 12 11 9
39 39 H 1.09009 * 110.46428 * 342.50630 * 15 13 12
40 40 H 1.09002 * 110.46607 * 104.95103 * 15 13 12
41 41 H 1.09001 * 110.76362 * 156.56515 * 16 15 13
42 42 H 1.09005 * 110.75488 * 279.94112 * 16 15 13
43 43 H 1.09001 * 110.44361 * 203.11961 * 17 16 15
44 44 H 1.09001 * 110.44160 * 80.56027 * 17 16 15
45 45 H 1.09009 * 109.46919 * 59.77086 * 19 18 17
46 46 H 1.09004 * 109.47053 * 179.76380 * 19 18 17
47 47 H 0.96998 * 119.99676 * 359.97438 * 20 19 18
48 48 H 0.97002 * 120.00054 * 180.02562 * 24 23 21
49 49 H 1.08996 * 110.39585 * 338.54502 * 29 11 9
50 50 H 1.09003 * 110.39529 * 100.82010 * 29 11 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0323 1.4208 0.0000
4 7 2.3587 2.0177 -1.1332
5 6 2.7995 3.2603 -1.1430
6 7 2.9358 3.9642 -0.0361
7 6 2.6267 3.4480 1.1403
8 6 2.1612 2.1293 1.1997
9 6 1.8088 1.5052 2.4926
10 8 2.1484 0.3621 2.7282
11 7 1.1110 2.2037 3.4100
12 6 0.6954 3.6240 3.3476
13 6 -0.7321 3.6402 3.9339
14 1 -1.4918 3.6414 3.1523
15 6 -0.8721 4.8563 4.8709
16 6 -1.6114 4.3030 6.1139
17 6 -0.9854 2.8928 6.2795
18 6 -0.8047 2.3828 4.8360
19 6 -1.9246 1.4339 4.4044
20 7 -1.9450 0.2673 5.2903
21 6 -2.8690 -0.7243 5.0957
22 1 -3.5832 -0.6461 4.2892
23 6 -2.8885 -1.8293 5.9354
24 7 -2.0186 -1.9243 6.9185
25 14 -4.1487 -3.1824 5.6694
26 1 -3.5910 -4.2039 4.7471
27 1 -4.4759 -3.8171 6.9715
28 1 -5.3811 -2.6019 5.0782
29 6 0.5858 1.7252 4.7097
30 1 -0.3633 0.5138 -0.8900
31 1 -0.3633 -1.0277 0.0005
32 1 -0.3633 0.5138 0.8901
33 1 1.8933 -0.5139 -0.8901
34 1 1.8934 -0.5138 0.8900
35 1 3.0573 3.7161 -2.0875
36 1 2.7363 4.0324 2.0419
37 1 0.6856 3.9717 2.3146
38 1 1.3608 4.2414 3.9509
39 1 0.1103 5.2374 5.1502
40 1 -1.4619 5.6391 4.3939
41 1 -1.4126 4.9218 6.9889
42 1 -2.6827 4.2308 5.9258
43 1 -1.6600 2.2394 6.8328
44 1 -0.0211 2.9611 6.7831
45 1 -2.8822 1.9516 4.4632
46 1 -1.7500 1.1084 3.3789
47 1 -1.3033 0.1970 6.0144
48 1 -2.0320 -2.6967 7.5051
49 1 0.4934 0.6392 4.7054
50 1 1.2354 2.0471 5.5236
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001112579977.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:39:55
Heat of formation + Delta-G solvation = 5.699056 kcal
Electronic energy + Delta-G solvation = -31643.071417 eV
Core-core repulsion = 27669.501907 eV
Total energy + Delta-G solvation = -3973.569510 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.195 amu
Computer time = 1.03 seconds
Orbital eigenvalues (eV)
-42.55742 -41.46547 -39.71271 -36.64170 -36.20473 -35.67557 -34.14627 -33.43678
-32.23806 -31.10174 -30.36504 -27.73595 -26.71892 -26.24658 -26.06913 -25.03402
-23.59973 -23.07418 -21.45489 -20.78514 -19.87895 -19.29745 -19.05460 -18.04270
-17.93815 -17.33657 -16.68176 -16.63224 -16.36652 -16.00286 -15.68670 -15.32838
-15.22933 -15.06696 -14.95483 -14.63578 -14.57789 -14.39574 -14.09472 -13.68597
-13.51872 -13.33474 -13.10039 -12.90880 -12.83660 -12.72618 -12.67273 -12.30335
-12.19271 -12.12604 -11.91590 -11.78496 -11.74893 -11.67271 -11.47970 -11.38635
-11.36427 -10.98072 -10.85894 -10.72300 -10.44178 -9.84192 -8.99475 -7.96199
-5.23928 -0.61062 -0.17088 1.43679 1.44391 1.46001 1.53751 1.78089
2.53702 2.56953 2.83950 3.01230 3.18992 3.19562 3.36548 3.40581
3.56457 3.66265 3.73527 4.07713 4.13491 4.16048 4.16526 4.18944
4.19987 4.29718 4.39179 4.43255 4.45110 4.54767 4.59909 4.64333
4.75443 4.84323 4.86955 4.87556 4.94232 4.98296 5.03244 5.05120
5.09979 5.20938 5.21953 5.25984 5.31204 5.41354 5.46127 5.50565
5.58513 5.72076 6.25932 6.40102 6.86337 6.91505 7.32981 8.08582
8.32657 9.27126
Molecular weight = 344.20amu
Principal moments of inertia in cm(-1)
A = 0.010452 B = 0.003904 C = 0.003093
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2678.295140 B = 7170.693191 C = 9049.532570
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.132 4.132
2 C -0.096 4.096
3 C 0.225 3.775
4 N -0.531 5.531
5 C 0.314 3.686
6 N -0.526 5.526
7 C 0.193 3.807
8 C -0.244 4.244
9 C 0.584 3.416
10 O -0.569 6.569
11 N -0.609 5.609
12 C 0.098 3.902
13 C -0.092 4.092
14 H 0.086 0.914
15 C -0.102 4.102
16 C -0.116 4.116
17 C -0.112 4.112
18 C -0.068 4.068
19 C 0.178 3.822
20 N -0.736 5.736
21 C -0.245 4.245
22 H 0.069 0.931
23 C -0.070 4.070
24 N -0.966 5.966
25 Si 0.968 3.032
26 H -0.291 1.291
27 H -0.292 1.292
28 H -0.269 1.269
29 C 0.118 3.882
30 H 0.070 0.930
31 H 0.071 0.929
32 H 0.032 0.968
33 H 0.102 0.898
34 H 0.087 0.913
35 H 0.239 0.761
36 H 0.201 0.799
37 H 0.090 0.910
38 H 0.116 0.884
39 H 0.094 0.906
40 H 0.086 0.914
41 H 0.084 0.916
42 H 0.056 0.944
43 H 0.044 0.956
44 H 0.079 0.921
45 H 0.022 0.978
46 H -0.001 1.001
47 H 0.376 0.624
48 H 0.251 0.749
49 H 0.045 0.955
50 H 0.090 0.910
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.610 20.205 -11.906 24.982
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.190 4.190
2 C -0.133 4.133
3 C 0.079 3.921
4 N -0.245 5.245
5 C 0.028 3.972
6 N -0.240 5.240
7 C 0.026 3.974
8 C -0.252 4.252
9 C 0.372 3.628
10 O -0.449 6.449
11 N -0.341 5.341
12 C -0.023 4.023
13 C -0.112 4.112
14 H 0.105 0.895
15 C -0.140 4.140
16 C -0.154 4.154
17 C -0.150 4.150
18 C -0.069 4.069
19 C 0.051 3.949
20 N -0.379 5.379
21 C -0.377 4.377
22 H 0.087 0.913
23 C -0.263 4.263
24 N -0.616 5.616
25 Si 0.797 3.203
26 H -0.218 1.218
27 H -0.219 1.219
28 H -0.194 1.194
29 C -0.004 4.004
30 H 0.089 0.911
31 H 0.090 0.910
32 H 0.051 0.949
33 H 0.121 0.879
34 H 0.106 0.894
35 H 0.255 0.745
36 H 0.217 0.783
37 H 0.108 0.892
38 H 0.133 0.867
39 H 0.112 0.888
40 H 0.105 0.895
41 H 0.103 0.897
42 H 0.074 0.926
43 H 0.063 0.937
44 H 0.098 0.902
45 H 0.040 0.960
46 H 0.017 0.983
47 H 0.209 0.791
48 H 0.060 0.940
49 H 0.064 0.936
50 H 0.108 0.892
Dipole moment (debyes) X Y Z Total
from point charges 8.950 19.908 -12.838 25.323
hybrid contribution -0.781 -2.125 1.187 2.556
sum 8.169 17.782 -11.651 22.775
Atomic orbital electron populations
1.21565 0.93090 1.03059 1.01279 1.20833 0.97211 0.90012 1.05282
1.21885 0.86791 0.96314 0.87148 1.68453 1.14295 1.12967 1.28770
1.26001 0.86955 0.85743 0.98466 1.68597 1.17983 1.38300 0.99107
1.23922 0.86324 0.89332 0.97779 1.21424 1.10128 0.98833 0.94786
1.17706 0.77664 0.84613 0.82791 1.90776 1.55452 1.19432 1.79202
1.48966 1.52731 1.13704 1.18665 1.23156 0.95599 0.80444 1.03117
1.22734 0.96624 0.94158 0.97686 0.89548 1.22426 1.02165 0.95363
0.94031 1.22517 0.99314 0.94440 0.99122 1.22464 1.01395 0.97366
0.93758 1.22126 0.92681 0.94914 0.97205 1.20564 0.95545 0.87019
0.91761 1.42489 1.39101 1.20532 1.35812 1.19557 1.08979 0.98627
1.10552 0.91254 1.25479 1.01488 1.01013 0.98289 1.69801 1.39814
1.31203 1.20815 0.85222 0.79097 0.79442 0.76514 1.21833 1.21885
1.19375 1.22547 0.93947 0.99330 0.84594 0.91100 0.91010 0.94920
0.87939 0.89429 0.74538 0.78272 0.89151 0.86658 0.88783 0.89529
0.89700 0.92565 0.93714 0.90230 0.96023 0.98309 0.79129 0.94030
0.93588 0.89206
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -3.61 9.89 71.98 0.71 -2.89 16
2 C -0.10 -2.63 5.78 29.85 0.17 -2.45 16
3 C 0.23 5.84 6.11 42.91 0.26 6.11 16
4 N -0.53 -11.84 10.36 -187.07 -1.94 -13.78 16
5 C 0.31 5.30 12.27 180.84 2.22 7.52 16
6 N -0.53 -9.33 10.42 -198.98 -2.07 -11.40 16
7 C 0.19 3.54 9.11 85.07 0.78 4.32 16
8 C -0.24 -6.13 5.44 -19.91 -0.11 -6.24 16
9 C 0.58 18.32 7.07 86.78 0.61 18.93 16
10 O -0.57 -23.21 14.94 -3.88 -0.06 -23.27 16
11 N -0.61 -16.50 3.31 -811.76 -2.69 -19.19 16
12 C 0.10 1.65 5.10 86.52 0.44 2.09 16
13 C -0.09 -1.83 3.54 -9.29 -0.03 -1.87 16
14 H 0.09 1.80 7.92 -2.39 -0.02 1.78 16
15 C -0.10 -1.42 6.35 31.61 0.20 -1.22 16
16 C -0.12 -2.26 6.93 31.97 0.22 -2.04 16
17 C -0.11 -3.04 5.71 31.73 0.18 -2.86 16
18 C -0.07 -2.00 0.62 -50.68 -0.03 -2.03 16
19 C 0.18 7.18 5.24 86.38 0.45 7.63 16
20 N -0.74 -37.84 4.63 -343.44 -1.59 -39.44 16
21 C -0.25 -14.06 9.99 84.03 0.84 -13.22 16
22 H 0.07 3.87 7.83 -2.91 -0.02 3.85 16
23 C -0.07 -4.12 5.50 84.86 0.47 -3.66 16
24 N -0.97 -60.13 13.06 21.65 0.28 -59.85 16
25 Si 0.97 47.36 29.55 68.60 2.03 49.39 16
26 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16
27 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16
28 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16
29 C 0.12 3.79 5.92 86.52 0.51 4.30 16
30 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16
31 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16
32 H 0.03 1.03 8.03 -2.38 -0.02 1.01 16
33 H 0.10 2.44 8.14 -2.38 -0.02 2.42 16
34 H 0.09 2.92 5.67 -2.39 -0.01 2.91 16
35 H 0.24 1.93 8.06 -2.91 -0.02 1.90 16
36 H 0.20 2.39 6.73 -2.91 -0.02 2.37 16
37 H 0.09 1.27 6.04 -2.39 -0.01 1.26 16
38 H 0.12 1.20 7.18 -2.39 -0.02 1.18 16
39 H 0.09 0.89 7.18 -2.38 -0.02 0.88 16
40 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16
41 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16
42 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16
43 H 0.04 1.58 7.19 -2.39 -0.02 1.57 16
44 H 0.08 1.91 7.18 -2.39 -0.02 1.89 16
45 H 0.02 0.88 8.14 -2.38 -0.02 0.86 16
46 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16
47 H 0.38 20.43 6.68 -92.71 -0.62 19.81 16
48 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16
49 H 0.05 1.99 7.03 -2.39 -0.02 1.97 16
50 H 0.09 2.51 7.19 -2.39 -0.02 2.50 16
Total: -1.00 -76.56 391.55 2.20 -74.36
By element:
Atomic # 1 Polarization: 30.42 SS G_CDS: 0.34 Total: 30.77 kcal
Atomic # 6 Polarization: 4.51 SS G_CDS: 7.90 Total: 12.41 kcal
Atomic # 7 Polarization: -135.64 SS G_CDS: -8.01 Total: -143.65 kcal
Atomic # 8 Polarization: -23.21 SS G_CDS: -0.06 Total: -23.27 kcal
Atomic # 14 Polarization: 47.36 SS G_CDS: 2.03 Total: 49.39 kcal
Total: -76.56 2.20 -74.36 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001112579977.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 80.059 kcal
(2) G-P(sol) polarization free energy of solvation -76.560 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.500 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.199 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.360 kcal
(6) G-S(sol) free energy of system = (1) + (5) 5.699 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.03 seconds