Wall clock time and date at job start Wed Apr 1 2020 03:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50700 * 120.00610 * 2 1 4 4 C 1.52998 * 109.47292 * 124.99267 * 3 2 1 5 5 C 1.53003 * 109.46962 * 183.65822 * 4 3 2 6 6 C 1.50697 * 115.54937 * 63.73550 * 5 4 3 7 7 O 1.21283 * 120.00139 * 246.25715 * 6 5 4 8 8 N 1.34772 * 120.00216 * 66.26491 * 6 5 4 9 9 C 1.46502 * 120.00367 * 175.59645 * 8 6 5 10 10 C 1.50697 * 109.47155 * 179.97438 * 9 8 6 11 11 C 1.40079 * 126.12488 * 259.97555 * 10 9 8 12 12 N 1.31012 * 108.25574 * 180.02562 * 11 10 9 13 13 N 1.39750 * 108.17557 * 0.16129 * 12 11 10 14 14 C 1.34649 * 126.12660 * 79.99414 * 10 9 8 15 15 C 1.51036 * 127.90995 * 359.66975 * 14 10 9 16 16 N 1.47494 * 107.00005 * 169.44604 * 15 14 10 17 17 C 1.36934 * 121.01743 * 222.96544 * 16 15 14 18 18 H 1.07995 * 120.00875 * 158.99851 * 17 16 15 19 19 C 1.38822 * 119.99562 * 338.98884 * 17 16 15 20 20 N 1.31616 * 120.00064 * 348.12105 * 19 17 16 21 21 Si 1.86796 * 119.99834 * 168.11684 * 19 17 16 22 22 H 1.48500 * 109.47159 * 94.96990 * 21 19 17 23 23 H 1.48496 * 109.47227 * 214.97272 * 21 19 17 24 24 H 1.48503 * 109.47245 * 334.97505 * 21 19 17 25 25 C 1.47085 * 117.97164 * 42.93724 * 16 15 14 26 26 C 1.46555 * 127.32068 * 179.44833 * 13 12 11 27 27 C 1.53001 * 117.49747 * 209.40763 * 5 4 3 28 28 C 1.53002 * 117.49681 * 278.06915 * 5 4 3 29 29 H 1.08001 * 120.00340 * 180.02562 * 1 2 3 30 30 H 1.08002 * 119.99569 * 0.02562 * 1 2 3 31 31 H 1.08000 * 119.99539 * 179.97438 * 2 1 3 32 32 H 1.09005 * 109.46822 * 4.99814 * 3 2 1 33 33 H 1.08993 * 109.47170 * 245.00270 * 3 2 1 34 34 H 1.09001 * 109.47194 * 63.66309 * 4 3 2 35 35 H 1.08995 * 109.47434 * 303.65674 * 4 3 2 36 36 H 0.97011 * 119.99890 * 355.58704 * 8 6 5 37 37 H 1.08995 * 109.46945 * 59.99576 * 9 8 6 38 38 H 1.08995 * 109.46510 * 299.99337 * 9 8 6 39 39 H 1.07996 * 125.86909 * 0.09047 * 11 10 9 40 40 H 1.09007 * 109.94664 * 288.82026 * 15 14 10 41 41 H 1.08999 * 109.94805 * 50.06889 * 15 14 10 42 42 H 0.96994 * 119.99955 * 179.97438 * 20 19 17 43 43 H 1.09001 * 109.50926 * 176.49594 * 25 16 15 44 44 H 1.09000 * 109.50827 * 56.34744 * 25 16 15 45 45 H 1.09000 * 109.50949 * 281.50827 * 26 13 12 46 46 H 1.09008 * 109.50780 * 41.63658 * 26 13 12 47 47 H 1.08999 * 117.49875 * 214.99840 * 27 5 4 48 48 H 1.08992 * 117.49922 * 0.02562 * 27 5 4 49 49 H 1.09000 * 117.50113 * 359.97204 * 28 5 4 50 50 H 1.09006 * 117.49992 * 144.97850 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0350 1.3330 1.1817 5 6 3.7340 2.6930 1.2352 6 6 2.8358 3.8757 1.4915 7 8 2.6772 4.7146 0.6302 8 7 2.2091 4.0013 2.6780 9 6 1.4134 5.1979 2.9632 10 6 0.8226 5.0907 4.3454 11 6 -0.4890 4.7090 4.6555 12 7 -0.6270 4.7356 5.9581 13 7 0.5890 5.1377 6.5172 14 6 1.4609 5.3449 5.5034 15 6 2.8934 5.7827 5.6968 16 7 3.0376 6.1737 7.1117 17 6 3.7284 7.3020 7.4651 18 1 3.5533 7.7639 8.4254 19 6 4.6541 7.8519 6.5889 20 7 5.0412 7.1736 5.5294 21 14 5.3504 9.5546 6.9134 22 1 6.6396 9.4319 7.6401 23 1 5.5745 10.2522 5.6218 24 1 4.3905 10.3333 7.7366 25 6 2.4161 5.3151 8.1315 26 6 0.8967 5.3189 7.9386 27 6 5.1467 2.7387 1.8209 28 6 4.9367 2.9059 0.3138 29 1 -0.5401 -0.9353 0.0004 30 1 -0.5399 0.9354 -0.0004 31 1 1.8499 -0.9353 0.0004 32 1 1.3587 2.1316 0.0895 33 1 2.6214 1.4025 -0.9313 34 1 3.7796 0.5465 1.0587 35 1 2.4847 1.1707 2.1084 36 1 2.2846 3.2992 3.3432 37 1 0.6107 5.2834 2.2309 38 1 2.0514 6.0799 2.9078 39 1 -1.2544 4.4384 3.9434 40 1 3.5684 4.9579 5.4683 41 1 3.1126 6.6334 5.0517 42 1 5.6877 7.5580 4.9170 43 1 2.6587 5.6947 9.1240 44 1 2.7917 4.2971 8.0283 45 1 0.4909 6.2710 8.2804 46 1 0.4530 4.5060 8.5136 47 1 5.4266 3.6242 2.3915 48 1 5.5784 1.7999 2.1676 49 1 5.2303 2.0770 -0.3302 50 1 5.0782 3.9014 -0.1073 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001128475899.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:26 Heat of formation + Delta-G solvation = 103.688783 kcal Electronic energy + Delta-G solvation = -30728.588892 eV Core-core repulsion = 26759.268536 eV Total energy + Delta-G solvation = -3969.320356 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.98403 -39.91946 -37.05548 -36.32399 -35.11259 -34.66195 -33.00059 -31.24220 -30.27680 -30.21040 -28.84213 -26.25729 -25.31373 -24.19387 -23.49241 -22.55195 -22.16041 -21.70345 -20.15378 -19.88558 -19.24594 -18.31260 -16.84394 -16.76446 -16.02554 -15.82003 -15.46609 -15.37496 -15.15314 -14.75997 -14.37052 -14.10081 -13.85858 -13.65959 -13.48887 -13.33463 -13.21290 -13.13443 -12.68761 -12.48677 -12.45081 -12.16222 -11.70336 -11.59358 -11.50684 -11.27001 -11.23440 -11.17686 -11.04151 -10.89542 -10.71074 -10.40332 -10.21682 -10.19383 -10.09980 -10.07044 -9.55127 -9.41880 -8.95966 -8.68311 -8.53776 -7.90319 -7.13500 -6.01338 -3.44208 2.12402 2.43730 2.86222 2.94820 3.02200 3.27417 3.35466 3.36719 3.61790 3.86119 4.29568 4.46873 4.75969 4.83630 4.91306 4.94850 4.97737 5.05963 5.16384 5.20936 5.27714 5.38012 5.40167 5.51152 5.54837 5.57472 5.60411 5.66451 5.71387 5.73981 5.85881 5.87988 5.93086 6.01562 6.07216 6.17724 6.17967 6.20296 6.38317 6.39677 6.47553 6.56964 6.62712 6.77536 6.94344 7.10142 7.21118 7.54749 7.62324 7.86181 8.07748 8.24427 8.53095 8.91610 9.52947 10.03704 11.08300 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.010620 B = 0.003457 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2635.784150 B = 8097.944671 C = 9823.208414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.153 4.153 3 C -0.093 4.093 4 C -0.069 4.069 5 C -0.160 4.160 6 C 0.551 3.449 7 O -0.545 6.545 8 N -0.712 5.712 9 C 0.210 3.790 10 C -0.288 4.288 11 C 0.056 3.944 12 N -0.319 5.319 13 N -0.359 5.359 14 C 0.120 3.880 15 C 0.227 3.773 16 N -0.599 5.599 17 C -0.258 4.258 18 H 0.075 0.925 19 C 0.004 3.996 20 N -0.908 5.908 21 Si 0.911 3.089 22 H -0.286 1.286 23 H -0.287 1.287 24 H -0.279 1.279 25 C 0.129 3.871 26 C 0.114 3.886 27 C -0.157 4.157 28 C -0.146 4.146 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.107 0.893 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.400 0.600 37 H 0.067 0.933 38 H 0.073 0.927 39 H 0.175 0.825 40 H 0.054 0.946 41 H 0.122 0.878 42 H 0.259 0.741 43 H 0.084 0.916 44 H 0.036 0.964 45 H 0.075 0.925 46 H 0.080 0.920 47 H 0.105 0.895 48 H 0.101 0.899 49 H 0.099 0.901 50 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.293 -12.952 -6.473 15.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.171 4.171 3 C -0.131 4.131 4 C -0.106 4.106 5 C -0.163 4.163 6 C 0.336 3.664 7 O -0.422 6.422 8 N -0.362 5.362 9 C 0.086 3.914 10 C -0.301 4.301 11 C -0.130 4.130 12 N -0.139 5.139 13 N -0.140 5.140 14 C -0.012 4.012 15 C 0.100 3.900 16 N -0.321 5.321 17 C -0.387 4.387 18 H 0.093 0.907 19 C -0.194 4.194 20 N -0.552 5.552 21 Si 0.741 3.259 22 H -0.213 1.213 23 H -0.213 1.213 24 H -0.204 1.204 25 C 0.001 3.999 26 C -0.010 4.010 27 C -0.194 4.194 28 C -0.183 4.183 29 H 0.113 0.887 30 H 0.115 0.885 31 H 0.125 0.875 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.233 0.767 37 H 0.085 0.915 38 H 0.091 0.909 39 H 0.192 0.808 40 H 0.071 0.929 41 H 0.140 0.860 42 H 0.069 0.931 43 H 0.102 0.898 44 H 0.054 0.946 45 H 0.093 0.907 46 H 0.098 0.902 47 H 0.123 0.877 48 H 0.120 0.880 49 H 0.117 0.883 50 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -5.061 -12.403 -6.016 14.684 hybrid contribution 0.747 0.596 -0.092 0.961 sum -4.313 -11.806 -6.109 13.975 Atomic orbital electron populations 1.23872 0.96056 1.01797 1.01480 1.22964 0.96043 0.98404 0.99657 1.20734 0.98233 0.95290 0.98798 1.21003 0.97870 0.92938 0.98823 1.21485 0.90324 0.95520 1.08985 1.19399 0.79521 0.85601 0.81857 1.90677 1.63454 1.43289 1.44790 1.46140 1.50760 1.22574 1.16761 1.19308 0.93699 0.87277 0.91067 1.19420 0.95388 1.20909 0.94349 1.23664 0.96508 0.99910 0.92959 1.77164 1.04063 1.23373 1.09287 1.48489 1.07545 1.51283 1.06690 1.22655 0.96373 0.94667 0.87469 1.20116 0.82257 1.00476 0.87116 1.44239 1.61708 1.26132 1.00037 1.19223 1.15552 1.00757 1.03138 0.90720 1.24994 0.96990 0.99330 0.98102 1.69868 1.33752 1.36576 1.15053 0.86135 0.78897 0.83481 0.77413 1.21259 1.21271 1.20398 1.21240 0.88299 0.95286 0.95096 1.22516 1.00366 1.01761 0.76374 1.23142 0.95261 1.04290 0.96682 1.22970 0.98449 1.03795 0.93094 0.88698 0.88545 0.87541 0.91293 0.90729 0.90906 0.91083 0.76662 0.91457 0.90883 0.80846 0.92880 0.86033 0.93058 0.89770 0.94628 0.90661 0.90209 0.87655 0.88045 0.88289 0.87905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.74 14.32 29.01 0.42 -1.33 16 2 C -0.15 -1.37 9.52 -36.03 -0.34 -1.71 16 3 C -0.09 -0.94 5.56 -27.88 -0.16 -1.09 16 4 C -0.07 -0.67 5.07 -26.73 -0.14 -0.81 16 5 C -0.16 -1.93 1.91 -155.66 -0.30 -2.23 16 6 C 0.55 8.52 6.33 -10.99 -0.07 8.45 16 7 O -0.54 -10.35 16.72 5.55 0.09 -10.26 16 8 N -0.71 -10.59 5.55 -61.48 -0.34 -10.93 16 9 C 0.21 3.44 5.96 -5.19 -0.03 3.41 16 10 C -0.29 -5.03 5.46 -105.20 -0.57 -5.60 16 11 C 0.06 0.93 11.97 -17.21 -0.21 0.72 16 12 N -0.32 -5.91 12.61 30.70 0.39 -5.52 16 13 N -0.36 -6.87 4.03 -56.98 -0.23 -7.10 16 14 C 0.12 2.37 6.71 -82.17 -0.55 1.82 16 15 C 0.23 5.06 5.16 -4.49 -0.02 5.04 16 16 N -0.60 -13.76 3.03 -173.03 -0.52 -14.28 16 17 C -0.26 -6.51 9.72 -15.06 -0.15 -6.66 16 18 H 0.08 1.83 7.85 -52.49 -0.41 1.41 16 19 C 0.00 0.11 5.12 -17.43 -0.09 0.02 16 20 N -0.91 -24.22 10.62 55.49 0.59 -23.63 16 21 Si 0.91 20.66 29.57 -169.99 -5.03 15.63 16 22 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 24 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 25 C 0.13 2.38 6.49 -3.64 -0.02 2.36 16 26 C 0.11 1.92 7.44 -3.93 -0.03 1.89 16 27 C -0.16 -1.79 9.93 -26.69 -0.27 -2.06 16 28 C -0.15 -1.65 9.78 -26.69 -0.26 -1.91 16 29 H 0.09 0.72 8.06 -52.49 -0.42 0.29 16 30 H 0.10 0.89 7.84 -52.49 -0.41 0.48 16 31 H 0.11 0.81 8.06 -52.49 -0.42 0.39 16 32 H 0.07 0.82 7.20 -51.93 -0.37 0.45 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.40 5.49 8.47 -40.82 -0.35 5.14 16 37 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 39 H 0.17 2.25 8.06 -52.49 -0.42 1.83 16 40 H 0.05 1.24 8.14 -51.93 -0.42 0.81 16 41 H 0.12 3.08 6.08 -51.93 -0.32 2.77 16 42 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 43 H 0.08 1.42 7.94 -51.93 -0.41 1.01 16 44 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 46 H 0.08 1.14 8.14 -51.92 -0.42 0.72 16 47 H 0.11 1.42 8.14 -51.93 -0.42 1.00 16 48 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 49 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 50 H 0.10 1.33 8.01 -51.93 -0.42 0.92 16 LS Contribution 413.44 15.07 6.23 6.23 Total: -1.00 -29.86 413.44 -9.77 -39.63 By element: Atomic # 1 Polarization: 18.09 SS G_CDS: -8.16 Total: 9.92 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: -2.79 Total: 0.31 kcal Atomic # 7 Polarization: -61.35 SS G_CDS: -0.12 Total: -61.46 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: 0.09 Total: -10.26 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.03 Total: 15.63 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -29.86 -9.77 -39.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128475899.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.314 kcal (2) G-P(sol) polarization free energy of solvation -29.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds