Wall clock time and date at job start Wed Apr 1 2020 03:52:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50700 * 120.00610 * 2 1 4 4 C 1.52998 * 109.47292 * 124.99267 * 3 2 1 5 5 C 1.53003 * 109.46962 * 183.65822 * 4 3 2 6 6 C 1.50697 * 115.54937 * 63.73550 * 5 4 3 7 7 O 1.21283 * 120.00139 * 246.25715 * 6 5 4 8 8 N 1.34772 * 120.00216 * 66.26491 * 6 5 4 9 9 C 1.46502 * 120.00367 * 175.59645 * 8 6 5 10 10 C 1.50697 * 109.47155 * 179.97438 * 9 8 6 11 11 C 1.40079 * 126.12488 * 259.97555 * 10 9 8 12 12 N 1.31012 * 108.25574 * 180.02562 * 11 10 9 13 13 N 1.39750 * 108.17557 * 0.16129 * 12 11 10 14 14 C 1.34649 * 126.12660 * 79.99414 * 10 9 8 15 15 C 1.51036 * 127.90995 * 359.66975 * 14 10 9 16 16 N 1.47494 * 107.00005 * 169.44604 * 15 14 10 17 17 C 1.36934 * 121.01743 * 222.96544 * 16 15 14 18 18 H 1.07995 * 120.00875 * 158.99851 * 17 16 15 19 19 C 1.38822 * 119.99562 * 338.98884 * 17 16 15 20 20 N 1.31616 * 120.00064 * 348.12105 * 19 17 16 21 21 Si 1.86796 * 119.99834 * 168.11684 * 19 17 16 22 22 H 1.48500 * 109.47159 * 94.96990 * 21 19 17 23 23 H 1.48496 * 109.47227 * 214.97272 * 21 19 17 24 24 H 1.48503 * 109.47245 * 334.97505 * 21 19 17 25 25 C 1.47085 * 117.97164 * 42.93724 * 16 15 14 26 26 C 1.46555 * 127.32068 * 179.44833 * 13 12 11 27 27 C 1.53001 * 117.49747 * 209.40763 * 5 4 3 28 28 C 1.53002 * 117.49681 * 278.06915 * 5 4 3 29 29 H 1.08001 * 120.00340 * 180.02562 * 1 2 3 30 30 H 1.08002 * 119.99569 * 0.02562 * 1 2 3 31 31 H 1.08000 * 119.99539 * 179.97438 * 2 1 3 32 32 H 1.09005 * 109.46822 * 4.99814 * 3 2 1 33 33 H 1.08993 * 109.47170 * 245.00270 * 3 2 1 34 34 H 1.09001 * 109.47194 * 63.66309 * 4 3 2 35 35 H 1.08995 * 109.47434 * 303.65674 * 4 3 2 36 36 H 0.97011 * 119.99890 * 355.58704 * 8 6 5 37 37 H 1.08995 * 109.46945 * 59.99576 * 9 8 6 38 38 H 1.08995 * 109.46510 * 299.99337 * 9 8 6 39 39 H 1.07996 * 125.86909 * 0.09047 * 11 10 9 40 40 H 1.09007 * 109.94664 * 288.82026 * 15 14 10 41 41 H 1.08999 * 109.94805 * 50.06889 * 15 14 10 42 42 H 0.96994 * 119.99955 * 179.97438 * 20 19 17 43 43 H 1.09001 * 109.50926 * 176.49594 * 25 16 15 44 44 H 1.09000 * 109.50827 * 56.34744 * 25 16 15 45 45 H 1.09000 * 109.50949 * 281.50827 * 26 13 12 46 46 H 1.09008 * 109.50780 * 41.63658 * 26 13 12 47 47 H 1.08999 * 117.49875 * 214.99840 * 27 5 4 48 48 H 1.08992 * 117.49922 * 0.02562 * 27 5 4 49 49 H 1.09000 * 117.50113 * 359.97204 * 28 5 4 50 50 H 1.09006 * 117.49992 * 144.97850 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0350 1.3330 1.1817 5 6 3.7340 2.6930 1.2352 6 6 2.8358 3.8757 1.4915 7 8 2.6772 4.7146 0.6302 8 7 2.2091 4.0013 2.6780 9 6 1.4134 5.1979 2.9632 10 6 0.8226 5.0907 4.3454 11 6 -0.4890 4.7090 4.6555 12 7 -0.6270 4.7356 5.9581 13 7 0.5890 5.1377 6.5172 14 6 1.4609 5.3449 5.5034 15 6 2.8934 5.7827 5.6968 16 7 3.0376 6.1737 7.1117 17 6 3.7284 7.3020 7.4651 18 1 3.5533 7.7639 8.4254 19 6 4.6541 7.8519 6.5889 20 7 5.0412 7.1736 5.5294 21 14 5.3504 9.5546 6.9134 22 1 6.6396 9.4319 7.6401 23 1 5.5745 10.2522 5.6218 24 1 4.3905 10.3333 7.7366 25 6 2.4161 5.3151 8.1315 26 6 0.8967 5.3189 7.9386 27 6 5.1467 2.7387 1.8209 28 6 4.9367 2.9059 0.3138 29 1 -0.5401 -0.9353 0.0004 30 1 -0.5399 0.9354 -0.0004 31 1 1.8499 -0.9353 0.0004 32 1 1.3587 2.1316 0.0895 33 1 2.6214 1.4025 -0.9313 34 1 3.7796 0.5465 1.0587 35 1 2.4847 1.1707 2.1084 36 1 2.2846 3.2992 3.3432 37 1 0.6107 5.2834 2.2309 38 1 2.0514 6.0799 2.9078 39 1 -1.2544 4.4384 3.9434 40 1 3.5684 4.9579 5.4683 41 1 3.1126 6.6334 5.0517 42 1 5.6877 7.5580 4.9170 43 1 2.6587 5.6947 9.1240 44 1 2.7917 4.2971 8.0283 45 1 0.4909 6.2710 8.2804 46 1 0.4530 4.5060 8.5136 47 1 5.4266 3.6242 2.3915 48 1 5.5784 1.7999 2.1676 49 1 5.2303 2.0770 -0.3302 50 1 5.0782 3.9014 -0.1073 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001128475899.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:25 Heat of formation + Delta-G solvation = 86.832858 kcal Electronic energy + Delta-G solvation = -30729.319820 eV Core-core repulsion = 26759.268536 eV Total energy + Delta-G solvation = -3970.051284 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.43996 -41.09831 -38.15280 -37.94373 -36.13776 -35.80686 -34.64540 -32.86768 -31.84358 -31.04546 -30.29547 -27.92177 -26.75283 -25.31411 -24.96737 -23.65348 -23.31729 -23.05230 -21.60548 -20.58983 -20.49160 -19.83243 -18.57127 -18.01952 -17.46276 -17.12566 -16.68750 -16.50101 -16.41583 -16.15383 -15.61189 -15.52373 -15.21905 -15.14793 -14.90666 -14.70065 -14.47314 -14.04743 -13.97831 -13.88383 -13.46192 -13.32709 -13.17614 -13.06842 -12.94135 -12.76451 -12.62375 -12.41654 -12.32996 -12.02733 -12.01886 -11.96429 -11.91319 -11.63104 -11.29129 -11.04539 -10.82674 -10.76133 -10.14162 -10.06150 -10.01510 -9.39023 -8.98672 -7.96686 -5.40444 0.92904 1.44889 1.45005 1.48167 1.55044 1.58165 1.62402 1.65614 2.43728 2.46668 2.81161 3.21907 3.42756 3.59620 3.60144 3.79040 3.84311 3.90527 3.98407 4.14192 4.17034 4.18765 4.22788 4.36585 4.38783 4.45238 4.52040 4.60622 4.72487 4.74887 4.77497 4.77803 4.88010 4.92189 4.99541 5.03719 5.05109 5.09710 5.17670 5.23654 5.24477 5.31928 5.42344 5.47478 5.57483 5.74092 5.79072 5.95813 6.09776 6.19639 6.61650 6.79423 6.99631 7.27895 7.65808 8.14983 9.10970 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.010620 B = 0.003457 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2635.784150 B = 8097.944671 C = 9823.208414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.153 4.153 3 C -0.091 4.091 4 C -0.061 4.061 5 C -0.163 4.163 6 C 0.546 3.454 7 O -0.586 6.586 8 N -0.705 5.705 9 C 0.217 3.783 10 C -0.276 4.276 11 C 0.066 3.934 12 N -0.326 5.326 13 N -0.367 5.367 14 C 0.097 3.903 15 C 0.246 3.754 16 N -0.618 5.618 17 C -0.262 4.262 18 H 0.082 0.918 19 C -0.047 4.047 20 N -0.933 5.933 21 Si 0.968 3.032 22 H -0.283 1.283 23 H -0.297 1.297 24 H -0.271 1.271 25 C 0.129 3.871 26 C 0.116 3.884 27 C -0.152 4.152 28 C -0.142 4.142 29 H 0.110 0.890 30 H 0.086 0.914 31 H 0.127 0.873 32 H 0.043 0.957 33 H 0.076 0.924 34 H 0.100 0.900 35 H 0.072 0.928 36 H 0.407 0.593 37 H 0.080 0.920 38 H 0.041 0.959 39 H 0.212 0.788 40 H 0.033 0.967 41 H 0.084 0.916 42 H 0.251 0.749 43 H 0.100 0.900 44 H 0.041 0.959 45 H 0.075 0.925 46 H 0.113 0.887 47 H 0.076 0.924 48 H 0.132 0.868 49 H 0.131 0.869 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.287 -15.152 -5.914 17.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.171 4.171 3 C -0.129 4.129 4 C -0.098 4.098 5 C -0.166 4.166 6 C 0.333 3.667 7 O -0.467 6.467 8 N -0.355 5.355 9 C 0.093 3.907 10 C -0.289 4.289 11 C -0.120 4.120 12 N -0.146 5.146 13 N -0.148 5.148 14 C -0.034 4.034 15 C 0.119 3.881 16 N -0.341 5.341 17 C -0.392 4.392 18 H 0.100 0.900 19 C -0.242 4.242 20 N -0.579 5.579 21 Si 0.796 3.204 22 H -0.210 1.210 23 H -0.224 1.224 24 H -0.195 1.195 25 C 0.002 3.998 26 C -0.006 4.006 27 C -0.189 4.189 28 C -0.179 4.179 29 H 0.128 0.872 30 H 0.104 0.896 31 H 0.145 0.855 32 H 0.061 0.939 33 H 0.094 0.906 34 H 0.119 0.881 35 H 0.091 0.909 36 H 0.242 0.758 37 H 0.098 0.902 38 H 0.060 0.940 39 H 0.229 0.771 40 H 0.051 0.949 41 H 0.102 0.898 42 H 0.061 0.939 43 H 0.119 0.881 44 H 0.060 0.940 45 H 0.094 0.906 46 H 0.131 0.869 47 H 0.095 0.905 48 H 0.150 0.850 49 H 0.149 0.851 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.074 -14.629 -5.401 16.735 hybrid contribution 0.999 1.287 -0.261 1.650 sum -5.075 -13.342 -5.662 15.357 Atomic orbital electron populations 1.23998 0.96317 1.02114 1.01501 1.23038 0.96053 0.98439 0.99582 1.20686 0.97912 0.95183 0.99079 1.21021 0.98241 0.91825 0.98738 1.21501 0.90044 0.95252 1.09799 1.20070 0.79299 0.86139 0.81182 1.90650 1.64894 1.45094 1.46033 1.46044 1.50414 1.22116 1.16908 1.19128 0.93552 0.86874 0.91144 1.19508 0.95860 1.19649 0.93845 1.24208 0.96486 0.98418 0.92888 1.77156 1.03635 1.23670 1.10158 1.48687 1.07546 1.51450 1.07159 1.22295 0.95582 0.96708 0.88843 1.19521 0.83750 0.98203 0.86620 1.44468 1.61917 1.26607 1.01121 1.19558 1.14946 1.01551 1.03103 0.90045 1.25679 0.97994 1.02217 0.98339 1.70040 1.34395 1.37633 1.15838 0.85244 0.78369 0.80100 0.76655 1.20978 1.22386 1.19548 1.21413 0.89018 0.94763 0.94646 1.22532 0.99040 1.03138 0.75939 1.23155 0.94688 1.04488 0.96559 1.23050 0.97716 1.03780 0.93392 0.87177 0.89565 0.85528 0.93865 0.90580 0.88134 0.90888 0.75807 0.90211 0.94020 0.77107 0.94943 0.89766 0.93929 0.88148 0.94044 0.90643 0.86932 0.90537 0.85040 0.85098 0.90279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.27 14.32 67.78 0.97 -2.30 16 2 C -0.15 -2.40 9.52 25.65 0.24 -2.16 16 3 C -0.09 -1.71 5.56 29.85 0.17 -1.54 16 4 C -0.06 -1.05 5.07 30.59 0.16 -0.90 16 5 C -0.16 -3.83 1.91 -52.93 -0.10 -3.94 16 6 C 0.55 17.41 6.33 87.66 0.55 17.97 16 7 O -0.59 -23.36 16.72 -3.04 -0.05 -23.41 16 8 N -0.71 -21.48 5.55 -466.81 -2.59 -24.07 16 9 C 0.22 7.33 5.96 85.63 0.51 7.84 16 10 C -0.28 -9.55 5.46 -20.24 -0.11 -9.66 16 11 C 0.07 2.04 11.97 85.26 1.02 3.06 16 12 N -0.33 -11.36 12.61 -56.79 -0.72 -12.07 16 13 N -0.37 -13.57 4.03 -334.19 -1.35 -14.91 16 14 C 0.10 3.86 6.71 41.31 0.28 4.14 16 15 C 0.25 11.41 5.16 85.55 0.44 11.85 16 16 N -0.62 -28.71 3.03 -701.35 -2.12 -30.83 16 17 C -0.26 -13.36 9.72 84.04 0.82 -12.55 16 18 H 0.08 3.94 7.85 -2.91 -0.02 3.92 16 19 C -0.05 -2.48 5.12 84.87 0.43 -2.05 16 20 N -0.93 -51.96 10.62 21.65 0.23 -51.73 16 21 Si 0.97 43.29 29.57 68.60 2.03 45.32 16 22 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 23 H -0.30 -13.67 7.11 99.48 0.71 -12.96 16 24 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 25 C 0.13 4.59 6.49 86.32 0.56 5.15 16 26 C 0.12 3.71 7.44 86.42 0.64 4.36 16 27 C -0.15 -3.38 9.93 30.62 0.30 -3.07 16 28 C -0.14 -3.12 9.78 30.62 0.30 -2.82 16 29 H 0.11 1.42 8.06 -2.91 -0.02 1.39 16 30 H 0.09 1.54 7.84 -2.91 -0.02 1.52 16 31 H 0.13 1.49 8.06 -2.91 -0.02 1.47 16 32 H 0.04 1.02 7.20 -2.38 -0.02 1.01 16 33 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.10 1.25 8.10 -2.39 -0.02 1.23 16 35 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.41 11.21 8.47 -92.70 -0.78 10.42 16 37 H 0.08 2.48 8.14 -2.39 -0.02 2.47 16 38 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.21 4.73 8.06 -2.91 -0.02 4.71 16 40 H 0.03 1.60 8.14 -2.38 -0.02 1.58 16 41 H 0.08 4.55 6.08 -2.39 -0.01 4.53 16 42 H 0.25 13.84 8.31 -92.71 -0.77 13.07 16 43 H 0.10 3.21 7.94 -2.39 -0.02 3.20 16 44 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 45 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 46 H 0.11 2.87 8.14 -2.38 -0.02 2.85 16 47 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 48 H 0.13 2.14 8.14 -2.39 -0.02 2.12 16 49 H 0.13 2.02 8.14 -2.39 -0.02 2.00 16 50 H 0.08 2.13 8.01 -2.38 -0.02 2.11 16 Total: -1.00 -66.90 413.44 2.76 -64.13 By element: Atomic # 1 Polarization: 34.07 SS G_CDS: 0.15 Total: 34.22 kcal Atomic # 6 Polarization: 6.18 SS G_CDS: 7.19 Total: 13.37 kcal Atomic # 7 Polarization: -127.08 SS G_CDS: -6.55 Total: -133.63 kcal Atomic # 8 Polarization: -23.36 SS G_CDS: -0.05 Total: -23.41 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -66.90 2.76 -64.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128475899.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.964 kcal (2) G-P(sol) polarization free energy of solvation -66.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds