Wall clock time and date at job start Wed Apr 1 2020 03:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.47101 * 119.99726 * 2 1 4 4 O 1.21619 * 119.99740 * 180.02562 * 3 2 1 5 5 N 1.34768 * 120.00268 * 0.02562 * 3 2 1 6 6 C 1.46510 * 120.00099 * 179.97438 * 5 3 2 7 7 C 1.50696 * 109.46934 * 180.02562 * 6 5 3 8 8 C 1.35318 * 126.03736 * 259.96948 * 7 6 5 9 9 N 1.34944 * 107.75011 * 180.02562 * 8 7 6 10 10 H 0.96997 * 126.04420 * 180.02562 * 9 8 7 11 11 N 1.40092 * 107.92398 * 359.75542 * 9 8 7 12 12 C 1.30840 * 108.20060 * 0.41338 * 11 9 8 13 13 C 1.50700 * 125.89493 * 179.84624 * 12 11 9 14 14 H 1.09004 * 110.91549 * 177.24464 * 13 12 11 15 15 C 1.55448 * 111.11612 * 53.25676 * 13 12 11 16 16 C 1.54321 * 102.96961 * 206.45980 * 15 13 12 17 17 N 1.47026 * 107.26791 * 22.19024 * 16 15 13 18 18 C 1.36940 * 125.64258 * 181.03445 * 17 16 15 19 19 H 1.08003 * 119.99660 * 180.02562 * 18 17 16 20 20 C 1.38811 * 120.00559 * 0.02875 * 18 17 16 21 21 N 1.31617 * 119.99776 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00230 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46543 * 89.99925 * 22 20 18 24 24 H 1.48496 * 109.46962 * 209.99740 * 22 20 18 25 25 H 1.48497 * 109.47197 * 330.00191 * 22 20 18 26 26 C 1.47419 * 108.70576 * 1.06162 * 17 16 15 27 27 C 1.32995 * 120.00081 * 180.02562 * 2 1 3 28 28 C 1.51401 * 136.31561 * 179.63109 * 27 2 1 29 29 C 1.53380 * 87.51732 * 206.05300 * 28 27 2 30 30 C 1.51406 * 136.31338 * 359.97438 * 27 2 1 31 31 H 1.08999 * 109.47040 * 89.99458 * 1 2 3 32 32 H 1.08997 * 109.47020 * 209.99843 * 1 2 3 33 33 H 1.09000 * 109.47279 * 329.99666 * 1 2 3 34 34 H 0.97000 * 120.00476 * 359.97438 * 5 3 2 35 35 H 1.08995 * 109.47208 * 59.99759 * 6 5 3 36 36 H 1.09002 * 109.46760 * 299.99605 * 6 5 3 37 37 H 1.08006 * 126.12837 * 359.97438 * 8 7 6 38 38 H 1.08998 * 110.70855 * 88.08784 * 15 13 12 39 39 H 1.08997 * 110.70436 * 324.83532 * 15 13 12 40 40 H 1.08998 * 109.88101 * 262.77542 * 16 15 13 41 41 H 1.08997 * 110.01327 * 141.67909 * 16 15 13 42 42 H 0.97004 * 120.00521 * 179.97438 * 21 20 18 43 43 H 1.09002 * 110.36926 * 94.70918 * 26 17 16 44 44 H 1.08995 * 110.36556 * 216.92202 * 26 17 16 45 45 H 1.09001 * 113.56049 * 320.63074 * 28 27 2 46 46 H 1.08994 * 113.56338 * 91.36816 * 28 27 2 47 47 H 1.08995 * 113.96835 * 220.29174 * 29 28 27 48 48 H 1.09002 * 113.70861 * 88.80916 * 29 28 27 49 49 H 1.09001 * 113.55983 * 268.62347 * 30 27 2 50 50 H 1.08997 * 113.55870 * 39.36912 * 30 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2424 1.2740 0.0000 4 8 3.4586 1.2740 -0.0005 5 7 1.5686 2.4411 0.0005 6 6 2.3011 3.7099 0.0011 7 6 1.3218 4.8553 0.0022 8 6 0.9489 5.5849 -1.0746 9 7 0.0608 6.5109 -0.6566 10 1 -0.3768 7.1741 -1.2130 11 7 -0.1224 6.3413 0.7219 12 6 0.6381 5.3524 1.1165 13 6 0.7528 4.8345 2.5271 14 1 1.4196 3.9734 2.5724 15 6 -0.6452 4.4882 3.1119 16 6 -0.4362 4.6561 4.6317 17 7 0.7216 5.5430 4.8176 18 6 1.2476 5.9266 6.0223 19 1 2.1035 6.5846 6.0529 20 6 0.6810 5.4697 7.2043 21 7 -0.3623 4.6681 7.1671 22 14 1.3991 5.9924 8.8476 23 1 0.7359 7.2406 9.3029 24 1 1.1754 4.9192 9.8493 25 1 2.8567 6.2328 8.6969 26 6 1.2219 5.9515 3.4924 27 6 2.1720 -1.1518 -0.0005 28 6 3.6250 -1.5771 -0.0074 29 6 3.1708 -2.8815 -0.6743 30 6 1.8138 -2.6228 -0.0007 31 1 -0.3633 0.0001 -1.0277 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3634 0.8899 0.5139 34 1 0.5986 2.4412 0.0005 35 1 2.9278 3.7681 -0.8888 36 1 2.9277 3.7672 0.8912 37 1 1.2999 5.4508 -2.0872 38 1 -0.9199 3.4611 2.8716 39 1 -1.3991 5.1856 2.7469 40 1 -0.2373 3.6863 5.0878 41 1 -1.3219 5.1032 5.0829 42 1 -0.7581 4.3484 7.9930 43 1 0.7900 6.9094 3.2026 44 1 2.3100 6.0137 3.5004 45 1 4.2566 -0.9599 -0.6465 46 1 4.0421 -1.7196 0.9894 47 1 3.6835 -3.7695 -0.3048 48 1 3.1394 -2.8295 -1.7626 49 1 1.7344 -3.0520 0.9981 50 1 0.9600 -2.8632 -0.6342 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001130387011.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:30:10 Heat of formation + Delta-G solvation = 99.678086 kcal Electronic energy + Delta-G solvation = -30045.781588 eV Core-core repulsion = 26076.287315 eV Total energy + Delta-G solvation = -3969.494273 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.33664 -39.94948 -38.39048 -37.24914 -34.95344 -33.39025 -32.98784 -31.23885 -30.49470 -29.06656 -27.47140 -26.76068 -26.04473 -25.60735 -24.58931 -22.94745 -22.06891 -20.56040 -20.31890 -19.96188 -18.82087 -18.56707 -17.61891 -16.74605 -16.49629 -16.09532 -15.76370 -15.16934 -14.85241 -14.65159 -14.44813 -14.17267 -14.11086 -13.79600 -13.62379 -13.26085 -12.78155 -12.63445 -12.55272 -12.47441 -12.28396 -12.16056 -12.10313 -11.80168 -11.75653 -11.65789 -11.16784 -10.92035 -10.78927 -10.75604 -10.65864 -10.54775 -10.07141 -9.92179 -9.76041 -9.69650 -9.59363 -9.12785 -9.10401 -8.85019 -8.60466 -8.51484 -6.74282 -5.63528 -2.96285 1.27454 1.83773 2.61160 2.87690 3.29379 3.44446 3.45845 3.50499 3.52498 4.22840 4.34058 4.52910 4.55211 4.68550 4.72349 4.84693 4.88618 5.10125 5.16190 5.28079 5.35308 5.43287 5.44141 5.45584 5.52226 5.54749 5.59796 5.60739 5.69983 5.76952 5.85417 5.88274 5.95830 5.98735 6.02958 6.10318 6.15106 6.43499 6.47309 6.52752 6.55448 6.60053 6.72834 6.77675 7.01487 7.26889 7.59872 7.63928 7.71782 7.78368 7.90627 8.29895 8.33834 9.30106 9.90308 10.56869 11.48285 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.008805 B = 0.003009 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3179.420144 B = 9303.460173 C =11445.903109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.164 4.164 3 C 0.556 3.444 4 O -0.544 6.544 5 N -0.720 5.720 6 C 0.202 3.798 7 C -0.261 4.261 8 C 0.075 3.925 9 N -0.481 5.481 10 H 0.438 0.562 11 N -0.282 5.282 12 C 0.122 3.878 13 C -0.032 4.032 14 H 0.091 0.909 15 C -0.130 4.130 16 C 0.178 3.822 17 N -0.605 5.605 18 C -0.225 4.225 19 H 0.077 0.923 20 C -0.009 4.009 21 N -0.922 5.922 22 Si 0.911 3.089 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.281 1.281 26 C 0.149 3.851 27 C -0.072 4.072 28 C -0.102 4.102 29 C -0.142 4.142 30 C -0.106 4.106 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.401 0.599 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.174 0.826 38 H 0.058 0.942 39 H 0.062 0.938 40 H 0.046 0.954 41 H 0.043 0.957 42 H 0.251 0.749 43 H 0.025 0.975 44 H 0.038 0.962 45 H 0.084 0.916 46 H 0.097 0.903 47 H 0.076 0.924 48 H 0.082 0.918 49 H 0.100 0.900 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.015 -10.165 -22.569 24.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.167 4.167 3 C 0.345 3.655 4 O -0.423 6.423 5 N -0.372 5.372 6 C 0.079 3.921 7 C -0.273 4.273 8 C -0.074 4.074 9 N -0.187 5.187 10 H 0.282 0.718 11 N -0.104 5.104 12 C -0.046 4.046 13 C -0.054 4.054 14 H 0.109 0.891 15 C -0.169 4.169 16 C 0.054 3.946 17 N -0.331 5.331 18 C -0.353 4.353 19 H 0.095 0.905 20 C -0.205 4.205 21 N -0.570 5.570 22 Si 0.742 3.258 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.207 1.207 26 C 0.022 3.978 27 C -0.074 4.074 28 C -0.138 4.138 29 C -0.180 4.180 30 C -0.142 4.142 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.236 0.764 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.191 0.809 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.064 0.936 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.043 0.957 44 H 0.056 0.944 45 H 0.103 0.897 46 H 0.115 0.885 47 H 0.095 0.905 48 H 0.101 0.899 49 H 0.118 0.882 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.007 -9.282 -21.984 23.884 hybrid contribution 0.120 0.165 0.218 0.299 sum 1.127 -9.117 -21.765 23.625 Atomic orbital electron populations 1.20679 0.90535 1.03288 1.02172 1.20457 0.95834 0.91357 1.09068 1.18214 0.87165 0.83778 0.76350 1.90768 1.13497 1.87764 1.50272 1.46091 1.10574 1.05319 1.75172 1.19371 0.91483 0.78735 1.02559 1.19962 1.09421 1.05204 0.92747 1.22355 0.93754 0.91754 0.99569 1.46348 1.35664 1.28780 1.07915 0.71842 1.77490 1.23777 1.20349 0.88746 1.22268 0.93251 0.92801 0.96286 1.20987 0.99352 0.99230 0.85792 0.89067 1.22972 0.94605 0.99972 0.99352 1.21146 0.90633 0.95029 0.87822 1.44462 1.33233 1.55493 0.99887 1.19063 1.10301 1.23819 0.82119 0.90480 1.24786 0.98218 0.99893 0.97641 1.69966 1.24039 1.37277 1.25748 0.86122 0.78377 0.77532 0.83775 1.21702 1.21716 1.20706 1.21514 0.96767 0.93926 0.85550 1.23215 0.98084 0.93663 0.92411 1.22163 0.94047 0.95705 1.01925 1.22717 0.96750 0.98294 1.00221 1.22295 0.98374 0.91761 1.01809 0.91349 0.91143 0.91266 0.76378 0.91161 0.90424 0.80862 0.92367 0.91896 0.93588 0.93856 0.93853 0.95736 0.94390 0.89699 0.88473 0.90540 0.89928 0.88188 0.90617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.93 9.57 36.01 0.34 -0.59 16 2 C -0.16 -1.84 6.00 -102.85 -0.62 -2.46 16 3 C 0.56 7.50 7.75 -12.67 -0.10 7.40 16 4 O -0.54 -9.02 15.15 5.26 0.08 -8.94 16 5 N -0.72 -8.47 5.49 -62.67 -0.34 -8.81 16 6 C 0.20 2.47 5.65 -5.19 -0.03 2.44 16 7 C -0.26 -3.22 5.47 -105.06 -0.57 -3.79 16 8 C 0.08 0.72 11.90 -17.22 -0.20 0.51 16 9 N -0.48 -5.12 7.36 30.45 0.22 -4.90 16 10 H 0.44 3.12 8.96 -182.61 -1.64 1.48 16 11 N -0.28 -4.37 12.39 33.67 0.42 -3.96 16 12 C 0.12 1.90 5.90 -82.41 -0.49 1.41 16 13 C -0.03 -0.59 3.46 -89.47 -0.31 -0.90 16 14 H 0.09 1.67 7.33 -51.93 -0.38 1.29 16 15 C -0.13 -2.52 6.42 -24.74 -0.16 -2.68 16 16 C 0.18 4.46 5.38 -3.06 -0.02 4.44 16 17 N -0.60 -16.02 3.39 -170.08 -0.58 -16.60 16 18 C -0.22 -6.46 10.28 -15.06 -0.15 -6.62 16 19 H 0.08 2.14 7.83 -52.48 -0.41 1.73 16 20 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 21 N -0.92 -27.62 10.31 55.49 0.57 -27.05 16 22 Si 0.91 22.64 29.55 -169.99 -5.02 17.62 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 24 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 25 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 26 C 0.15 3.30 6.68 -2.53 -0.02 3.28 16 27 C -0.07 -0.76 6.59 -100.48 -0.66 -1.42 16 28 C -0.10 -1.03 6.99 -27.56 -0.19 -1.23 16 29 C -0.14 -1.05 8.17 -26.18 -0.21 -1.27 16 30 C -0.11 -0.80 7.72 -27.39 -0.21 -1.01 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.54 7.91 -51.93 -0.41 0.13 16 33 H 0.07 0.58 6.70 -51.93 -0.35 0.23 16 34 H 0.40 4.15 6.56 -40.82 -0.27 3.89 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.08 1.11 7.78 -51.93 -0.40 0.70 16 37 H 0.17 0.96 8.06 -52.48 -0.42 0.54 16 38 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 39 H 0.06 1.22 7.85 -51.93 -0.41 0.81 16 40 H 0.05 1.25 7.38 -51.93 -0.38 0.87 16 41 H 0.04 1.20 7.50 -51.93 -0.39 0.81 16 42 H 0.25 7.29 8.31 -40.82 -0.34 6.96 16 43 H 0.02 0.57 7.95 -51.93 -0.41 0.15 16 44 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.08 0.99 7.49 -51.93 -0.39 0.60 16 46 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 47 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 48 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 49 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 50 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 405.26 15.07 6.11 6.11 Total: -1.00 -35.29 405.26 -11.45 -46.74 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -9.20 Total: 2.63 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: -3.70 Total: -2.84 kcal Atomic # 7 Polarization: -61.60 SS G_CDS: 0.29 Total: -61.31 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: 0.08 Total: -8.94 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -35.29 -11.45 -46.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130387011.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.415 kcal (2) G-P(sol) polarization free energy of solvation -35.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds