Wall clock time and date at job start Wed Apr 1 2020 03:30:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.47101 * 119.99726 * 2 1 4 4 O 1.21619 * 119.99740 * 180.02562 * 3 2 1 5 5 N 1.34768 * 120.00268 * 0.02562 * 3 2 1 6 6 C 1.46510 * 120.00099 * 179.97438 * 5 3 2 7 7 C 1.50696 * 109.46934 * 180.02562 * 6 5 3 8 8 C 1.35318 * 126.03736 * 259.96948 * 7 6 5 9 9 N 1.34944 * 107.75011 * 180.02562 * 8 7 6 10 10 H 0.96997 * 126.04420 * 180.02562 * 9 8 7 11 11 N 1.40092 * 107.92398 * 359.75542 * 9 8 7 12 12 C 1.30840 * 108.20060 * 0.41338 * 11 9 8 13 13 C 1.50700 * 125.89493 * 179.84624 * 12 11 9 14 14 H 1.09004 * 110.91549 * 177.24464 * 13 12 11 15 15 C 1.55448 * 111.11612 * 53.25676 * 13 12 11 16 16 C 1.54321 * 102.96961 * 206.45980 * 15 13 12 17 17 N 1.47026 * 107.26791 * 22.19024 * 16 15 13 18 18 C 1.36940 * 125.64258 * 181.03445 * 17 16 15 19 19 H 1.08003 * 119.99660 * 180.02562 * 18 17 16 20 20 C 1.38811 * 120.00559 * 0.02875 * 18 17 16 21 21 N 1.31617 * 119.99776 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00230 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46543 * 89.99925 * 22 20 18 24 24 H 1.48496 * 109.46962 * 209.99740 * 22 20 18 25 25 H 1.48497 * 109.47197 * 330.00191 * 22 20 18 26 26 C 1.47419 * 108.70576 * 1.06162 * 17 16 15 27 27 C 1.32995 * 120.00081 * 180.02562 * 2 1 3 28 28 C 1.51401 * 136.31561 * 179.63109 * 27 2 1 29 29 C 1.53380 * 87.51732 * 206.05300 * 28 27 2 30 30 C 1.51406 * 136.31338 * 359.97438 * 27 2 1 31 31 H 1.08999 * 109.47040 * 89.99458 * 1 2 3 32 32 H 1.08997 * 109.47020 * 209.99843 * 1 2 3 33 33 H 1.09000 * 109.47279 * 329.99666 * 1 2 3 34 34 H 0.97000 * 120.00476 * 359.97438 * 5 3 2 35 35 H 1.08995 * 109.47208 * 59.99759 * 6 5 3 36 36 H 1.09002 * 109.46760 * 299.99605 * 6 5 3 37 37 H 1.08006 * 126.12837 * 359.97438 * 8 7 6 38 38 H 1.08998 * 110.70855 * 88.08784 * 15 13 12 39 39 H 1.08997 * 110.70436 * 324.83532 * 15 13 12 40 40 H 1.08998 * 109.88101 * 262.77542 * 16 15 13 41 41 H 1.08997 * 110.01327 * 141.67909 * 16 15 13 42 42 H 0.97004 * 120.00521 * 179.97438 * 21 20 18 43 43 H 1.09002 * 110.36926 * 94.70918 * 26 17 16 44 44 H 1.08995 * 110.36556 * 216.92202 * 26 17 16 45 45 H 1.09001 * 113.56049 * 320.63074 * 28 27 2 46 46 H 1.08994 * 113.56338 * 91.36816 * 28 27 2 47 47 H 1.08995 * 113.96835 * 220.29174 * 29 28 27 48 48 H 1.09002 * 113.70861 * 88.80916 * 29 28 27 49 49 H 1.09001 * 113.55983 * 268.62347 * 30 27 2 50 50 H 1.08997 * 113.55870 * 39.36912 * 30 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2424 1.2740 0.0000 4 8 3.4586 1.2740 -0.0005 5 7 1.5686 2.4411 0.0005 6 6 2.3011 3.7099 0.0011 7 6 1.3218 4.8553 0.0022 8 6 0.9489 5.5849 -1.0746 9 7 0.0608 6.5109 -0.6566 10 1 -0.3768 7.1741 -1.2130 11 7 -0.1224 6.3413 0.7219 12 6 0.6381 5.3524 1.1165 13 6 0.7528 4.8345 2.5271 14 1 1.4196 3.9734 2.5724 15 6 -0.6452 4.4882 3.1119 16 6 -0.4362 4.6561 4.6317 17 7 0.7216 5.5430 4.8176 18 6 1.2476 5.9266 6.0223 19 1 2.1035 6.5846 6.0529 20 6 0.6810 5.4697 7.2043 21 7 -0.3623 4.6681 7.1671 22 14 1.3991 5.9924 8.8476 23 1 0.7359 7.2406 9.3029 24 1 1.1754 4.9192 9.8493 25 1 2.8567 6.2328 8.6969 26 6 1.2219 5.9515 3.4924 27 6 2.1720 -1.1518 -0.0005 28 6 3.6250 -1.5771 -0.0074 29 6 3.1708 -2.8815 -0.6743 30 6 1.8138 -2.6228 -0.0007 31 1 -0.3633 0.0001 -1.0277 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3634 0.8899 0.5139 34 1 0.5986 2.4412 0.0005 35 1 2.9278 3.7681 -0.8888 36 1 2.9277 3.7672 0.8912 37 1 1.2999 5.4508 -2.0872 38 1 -0.9199 3.4611 2.8716 39 1 -1.3991 5.1856 2.7469 40 1 -0.2373 3.6863 5.0878 41 1 -1.3219 5.1032 5.0829 42 1 -0.7581 4.3484 7.9930 43 1 0.7900 6.9094 3.2026 44 1 2.3100 6.0137 3.5004 45 1 4.2566 -0.9599 -0.6465 46 1 4.0421 -1.7196 0.9894 47 1 3.6835 -3.7695 -0.3048 48 1 3.1394 -2.8295 -1.7626 49 1 1.7344 -3.0520 0.9981 50 1 0.9600 -2.8632 -0.6342 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001130387011.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:30:09 Heat of formation + Delta-G solvation = 76.492016 kcal Electronic energy + Delta-G solvation = -30046.787011 eV Core-core repulsion = 26076.287315 eV Total energy + Delta-G solvation = -3970.499697 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.35206 -40.86633 -39.18863 -39.03708 -35.99565 -34.89724 -34.11634 -32.74565 -31.48140 -30.89566 -29.18007 -27.46240 -26.94256 -26.60431 -26.31457 -23.75162 -23.47729 -21.97253 -21.41712 -21.34904 -20.14659 -19.50639 -18.82013 -18.47578 -17.35193 -17.02460 -16.81558 -16.53411 -16.33493 -15.97052 -15.76331 -15.59616 -15.02013 -14.95551 -14.65006 -14.17551 -14.09993 -13.92967 -13.70511 -13.67940 -13.57147 -13.30487 -13.24937 -13.13324 -12.86692 -12.80800 -12.71754 -12.42851 -12.30112 -12.02870 -11.93530 -11.85059 -11.75618 -11.65335 -11.40688 -11.25620 -10.71115 -10.69938 -10.27696 -10.09230 -9.67162 -9.54951 -8.90343 -7.84623 -5.20676 0.42329 0.95580 1.44860 1.47519 1.51357 1.56485 2.02558 2.32805 2.49051 2.53693 3.32942 3.49236 3.52186 3.64235 3.71969 3.86024 3.87630 4.01403 4.06886 4.14803 4.16852 4.27823 4.32508 4.45714 4.54961 4.64666 4.68211 4.74936 4.78142 4.79264 4.83509 4.85341 4.88330 4.99911 5.03605 5.04102 5.07327 5.12174 5.14689 5.34586 5.38958 5.41889 5.43761 5.51372 5.56619 5.66547 5.76021 5.79479 6.19432 6.50905 6.66953 6.76434 7.10236 7.32256 7.76329 8.41801 9.25809 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.008805 B = 0.003009 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3179.420144 B = 9303.460173 C =11445.903109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.182 4.182 3 C 0.548 3.452 4 O -0.585 6.585 5 N -0.709 5.709 6 C 0.208 3.792 7 C -0.273 4.273 8 C 0.109 3.891 9 N -0.463 5.463 10 H 0.455 0.545 11 N -0.321 5.321 12 C 0.106 3.894 13 C -0.012 4.012 14 H 0.088 0.912 15 C -0.112 4.112 16 C 0.187 3.813 17 N -0.626 5.626 18 C -0.245 4.245 19 H 0.080 0.920 20 C -0.065 4.065 21 N -0.950 5.950 22 Si 0.980 3.020 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.270 1.270 26 C 0.147 3.853 27 C -0.083 4.083 28 C -0.115 4.115 29 C -0.130 4.130 30 C -0.095 4.095 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.067 0.933 34 H 0.409 0.591 35 H 0.085 0.915 36 H 0.049 0.951 37 H 0.225 0.775 38 H 0.084 0.916 39 H 0.065 0.935 40 H 0.015 0.985 41 H 0.006 0.994 42 H 0.247 0.753 43 H 0.018 0.982 44 H 0.037 0.963 45 H 0.062 0.938 46 H 0.092 0.908 47 H 0.092 0.908 48 H 0.088 0.912 49 H 0.110 0.890 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.712 -10.732 -25.165 27.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.185 4.185 3 C 0.338 3.662 4 O -0.467 6.467 5 N -0.361 5.361 6 C 0.084 3.916 7 C -0.285 4.285 8 C -0.041 4.041 9 N -0.171 5.171 10 H 0.303 0.697 11 N -0.144 5.144 12 C -0.061 4.061 13 C -0.033 4.033 14 H 0.106 0.894 15 C -0.151 4.151 16 C 0.062 3.938 17 N -0.352 5.352 18 C -0.374 4.374 19 H 0.097 0.903 20 C -0.258 4.258 21 N -0.599 5.599 22 Si 0.808 3.192 23 H -0.212 1.212 24 H -0.217 1.217 25 H -0.194 1.194 26 C 0.021 3.979 27 C -0.085 4.085 28 C -0.152 4.152 29 C -0.167 4.167 30 C -0.132 4.132 31 H 0.104 0.896 32 H 0.098 0.902 33 H 0.086 0.914 34 H 0.246 0.754 35 H 0.103 0.897 36 H 0.068 0.932 37 H 0.241 0.759 38 H 0.103 0.897 39 H 0.083 0.917 40 H 0.033 0.967 41 H 0.024 0.976 42 H 0.057 0.943 43 H 0.036 0.964 44 H 0.055 0.945 45 H 0.080 0.920 46 H 0.110 0.890 47 H 0.111 0.889 48 H 0.107 0.893 49 H 0.128 0.872 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.675 -9.814 -24.612 26.506 hybrid contribution 0.256 0.420 0.942 1.063 sum 0.932 -9.394 -23.670 25.483 Atomic orbital electron populations 1.20696 0.88445 1.03626 1.03375 1.20616 0.97250 0.90411 1.10175 1.18705 0.86892 0.84937 0.75657 1.90742 1.15250 1.88383 1.52375 1.46042 1.10938 1.04887 1.74240 1.19257 0.91444 0.78989 1.01933 1.19902 1.09982 1.06004 0.92641 1.22992 0.91224 0.89143 1.00737 1.46322 1.35361 1.29015 1.06420 0.69745 1.77389 1.24677 1.20771 0.91539 1.21786 0.95012 0.93972 0.95325 1.20619 0.97898 0.97582 0.87196 0.89393 1.22766 0.95593 1.01669 0.95059 1.20901 0.88779 0.92762 0.91334 1.44775 1.33854 1.55674 1.00941 1.19452 1.10524 1.23955 0.83506 0.90254 1.25668 0.98776 1.00206 1.01177 1.70189 1.25183 1.38253 1.26228 0.85054 0.78143 0.76936 0.79055 1.21248 1.21738 1.19437 1.21599 0.96554 0.95013 0.84706 1.23665 0.98434 0.95203 0.91214 1.22253 0.93917 0.97387 1.01650 1.22697 0.96415 0.97153 1.00426 1.22325 0.99040 0.89148 1.02688 0.89635 0.90250 0.91447 0.75387 0.89690 0.93218 0.75861 0.89719 0.91667 0.96691 0.97563 0.94323 0.96392 0.94487 0.91964 0.88972 0.88901 0.89310 0.87222 0.88810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.57 9.57 71.24 0.68 -0.89 16 2 C -0.18 -3.93 6.00 -18.70 -0.11 -4.04 16 3 C 0.55 14.76 7.75 86.57 0.67 15.43 16 4 O -0.59 -20.01 15.15 -4.09 -0.06 -20.07 16 5 N -0.71 -16.02 5.49 -470.44 -2.58 -18.61 16 6 C 0.21 4.85 5.65 85.63 0.48 5.33 16 7 C -0.27 -6.11 5.47 -20.15 -0.11 -6.22 16 8 C 0.11 1.62 11.90 83.54 0.99 2.61 16 9 N -0.46 -8.25 7.36 -57.59 -0.42 -8.67 16 10 H 0.46 4.73 8.96 -213.33 -1.91 2.82 16 11 N -0.32 -9.40 12.39 -47.38 -0.59 -9.99 16 12 C 0.11 3.17 5.90 43.10 0.25 3.43 16 13 C -0.01 -0.43 3.46 -10.05 -0.03 -0.46 16 14 H 0.09 3.28 7.33 -2.38 -0.02 3.26 16 15 C -0.11 -4.39 6.42 31.88 0.20 -4.19 16 16 C 0.19 9.79 5.38 86.73 0.47 10.25 16 17 N -0.63 -34.49 3.39 -692.01 -2.35 -36.84 16 18 C -0.25 -14.56 10.28 84.03 0.86 -13.70 16 19 H 0.08 4.52 7.83 -2.91 -0.02 4.50 16 20 C -0.07 -3.87 5.49 84.86 0.47 -3.41 16 21 N -0.95 -59.00 10.31 21.65 0.22 -58.77 16 22 Si 0.98 47.49 29.55 68.60 2.03 49.52 16 23 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 24 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 25 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 26 C 0.15 6.68 6.68 86.85 0.58 7.26 16 27 C -0.08 -1.69 6.59 -17.17 -0.11 -1.80 16 28 C -0.12 -2.36 6.99 30.06 0.21 -2.15 16 29 C -0.13 -1.70 8.17 30.95 0.25 -1.44 16 30 C -0.10 -1.24 7.72 30.17 0.23 -1.01 16 31 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.08 1.04 7.91 -2.39 -0.02 1.03 16 33 H 0.07 1.02 6.70 -2.39 -0.02 1.00 16 34 H 0.41 7.80 6.56 -92.71 -0.61 7.20 16 35 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.05 1.44 7.78 -2.39 -0.02 1.42 16 37 H 0.23 1.05 8.06 -2.91 -0.02 1.03 16 38 H 0.08 2.85 8.14 -2.39 -0.02 2.83 16 39 H 0.06 2.54 7.85 -2.39 -0.02 2.52 16 40 H 0.01 0.86 7.38 -2.39 -0.02 0.84 16 41 H 0.01 0.36 7.50 -2.39 -0.02 0.34 16 42 H 0.25 14.86 8.31 -92.70 -0.77 14.09 16 43 H 0.02 0.85 7.95 -2.39 -0.02 0.83 16 44 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 45 H 0.06 1.53 7.49 -2.39 -0.02 1.51 16 46 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 47 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 48 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 49 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 50 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -81.49 405.26 0.68 -80.80 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: -1.55 Total: 17.62 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: 5.99 Total: 5.01 kcal Atomic # 7 Polarization: -127.16 SS G_CDS: -5.72 Total: -132.88 kcal Atomic # 8 Polarization: -20.01 SS G_CDS: -0.06 Total: -20.07 kcal Atomic # 14 Polarization: 47.49 SS G_CDS: 2.03 Total: 49.52 kcal Total: -81.49 0.68 -80.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130387011.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.297 kcal (2) G-P(sol) polarization free energy of solvation -81.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds