Wall clock time and date at job start Wed Apr 1 2020 03:54:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47200 * 1 3 3 C 1.17393 * 179.97438 * 2 1 4 4 C 1.47200 * 179.97438 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.47133 * 269.40912 * 4 3 2 6 6 C 1.53006 * 109.47401 * 180.02562 * 5 4 3 7 7 C 1.50696 * 109.47087 * 179.97438 * 6 5 4 8 8 O 1.21286 * 120.00323 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00096 * 179.97438 * 7 6 5 10 10 C 1.47020 * 125.65045 * 180.02562 * 9 7 6 11 11 C 1.54332 * 107.27093 * 179.00003 * 10 9 7 12 12 H 1.08996 * 110.71916 * 96.16904 * 11 10 9 13 13 C 1.50693 * 110.86758 * 219.37275 * 11 10 9 14 14 C 1.34669 * 125.99551 * 28.32526 * 13 11 10 15 15 N 1.36879 * 106.81914 * 179.84663 * 14 13 11 16 16 C 1.46501 * 126.40131 * 180.11892 * 15 14 13 17 17 C 1.35045 * 107.20438 * 0.40886 * 15 14 13 18 18 N 1.30495 * 108.70433 * 359.74580 * 17 15 14 19 19 C 1.55163 * 102.93954 * 337.80436 * 11 10 9 20 20 H 1.08998 * 111.00125 * 277.39080 * 19 11 10 21 21 N 1.46498 * 111.00200 * 153.57572 * 19 11 10 22 22 C 1.36936 * 119.99972 * 158.17778 * 21 19 11 23 23 H 1.08002 * 119.99631 * 0.02562 * 22 21 19 24 24 C 1.38806 * 120.00202 * 180.02562 * 22 21 19 25 25 N 1.31624 * 120.00103 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 120.00201 * 179.72570 * 24 22 21 27 27 H 1.48501 * 109.47085 * 270.27640 * 26 24 22 28 28 H 1.48497 * 109.46789 * 30.27649 * 26 24 22 29 29 H 1.48490 * 109.47245 * 150.27799 * 26 24 22 30 30 C 1.47472 * 125.62459 * 0.02920 * 9 7 6 31 31 H 1.09011 * 109.46855 * 90.59394 * 1 2 3 32 32 H 1.08996 * 109.47107 * 210.58586 * 1 2 3 33 33 H 1.08997 * 109.47858 * 330.59443 * 1 2 3 34 34 H 1.09000 * 109.47422 * 149.41054 * 4 3 2 35 35 H 1.09004 * 109.47484 * 29.40486 * 4 3 2 36 36 H 1.09000 * 109.47567 * 59.99995 * 5 4 3 37 37 H 1.09000 * 109.47087 * 300.00136 * 5 4 3 38 38 H 1.08995 * 109.46629 * 59.99753 * 6 5 4 39 39 H 1.09000 * 109.46931 * 300.00011 * 6 5 4 40 40 H 1.08995 * 109.88668 * 59.58041 * 10 9 7 41 41 H 1.08999 * 110.00942 * 298.48171 * 10 9 7 42 42 H 1.07996 * 126.58846 * 359.96377 * 14 13 11 43 43 H 1.09001 * 109.47464 * 270.32745 * 16 15 14 44 44 H 1.09007 * 109.46924 * 30.31996 * 16 15 14 45 45 H 1.08994 * 109.47310 * 150.32076 * 16 15 14 46 46 H 1.08008 * 125.65056 * 179.71464 * 17 15 14 47 47 H 0.97001 * 120.00384 * 338.18595 * 21 19 11 48 48 H 0.97005 * 119.99717 * 359.71965 * 25 24 22 49 49 H 1.09003 * 110.34688 * 85.22902 * 30 9 7 50 50 H 1.09000 * 110.40730 * 322.89231 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6459 0.0005 0.0000 4 6 4.1179 0.0018 0.0000 5 6 4.6279 0.0172 1.4424 6 6 6.1580 0.0192 1.4425 7 6 6.6602 0.0349 2.8632 8 8 5.8721 0.0432 3.7850 9 7 7.9853 0.0388 3.1096 10 6 8.6093 0.0531 4.4407 11 6 10.1380 0.0267 4.2303 12 1 10.5500 1.0351 4.2683 13 6 10.8051 -0.8586 5.2512 14 6 10.2499 -1.9254 5.8572 15 7 11.1971 -2.4386 6.7016 16 6 11.0450 -3.6082 7.5706 17 6 12.2958 -1.6615 6.5889 18 7 12.0542 -0.7186 5.7198 19 6 10.2825 -0.5721 2.8062 20 1 10.2269 -1.6603 2.8326 21 7 11.5269 -0.1278 2.1736 22 6 12.0694 -0.8526 1.1463 23 1 11.5797 -1.7516 0.8021 24 6 13.2488 -0.4320 0.5472 25 7 13.8460 0.6633 0.9669 26 14 13.9930 -1.4249 -0.8492 27 1 14.9222 -2.4413 -0.2935 28 1 12.9104 -2.1046 -1.6049 29 1 14.7379 -0.5183 -1.7591 30 6 9.0489 0.0293 2.0881 31 1 -0.3633 -0.0107 -1.0277 32 1 -0.3633 -0.8846 0.5229 33 1 -0.3635 0.8952 0.5045 34 1 4.4805 0.8868 -0.5230 35 1 4.4821 -0.8931 -0.5046 36 1 4.2654 -0.8678 1.9655 37 1 4.2638 0.9121 1.9471 38 1 6.5201 0.9043 0.9196 39 1 6.5225 -0.8755 0.9378 40 1 8.2977 -0.8253 5.0058 41 1 8.3245 0.9586 4.9764 42 1 9.2502 -2.3044 5.7047 43 1 10.6569 -3.2933 8.5393 44 1 10.3508 -4.3131 7.1129 45 1 12.0140 -4.0886 7.7061 46 1 13.2212 -1.7976 7.1291 47 1 11.9667 0.6797 2.4825 48 1 13.4597 1.1787 1.6922 49 1 9.2624 1.0446 1.7539 50 1 8.7593 -0.5960 1.2436 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001130644650.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:25 Heat of formation + Delta-G solvation = 83.320182 kcal Electronic energy + Delta-G solvation = -29342.999540 eV Core-core repulsion = 25372.795935 eV Total energy + Delta-G solvation = -3970.203605 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.91109 -39.85543 -37.65815 -35.76311 -34.30115 -34.04077 -33.41476 -31.92484 -30.61881 -29.76549 -28.29193 -27.26997 -27.06707 -26.22767 -23.94026 -23.12939 -21.85772 -21.10368 -20.85761 -19.37848 -18.95610 -17.52640 -17.26082 -16.83122 -16.37548 -16.13456 -15.56668 -15.41788 -15.10698 -14.49622 -14.29065 -14.09214 -14.03127 -13.85538 -13.69975 -13.67540 -13.52445 -13.30088 -13.04630 -12.84405 -12.79789 -12.72954 -12.51397 -12.22651 -12.05209 -11.68656 -11.33926 -11.20947 -10.99771 -10.76341 -10.66365 -10.38076 -10.03159 -9.93717 -9.83183 -9.69486 -9.63371 -9.35429 -9.17722 -8.98597 -8.41028 -8.10376 -7.05337 -6.09347 -3.10530 2.20511 2.54014 2.58595 2.79707 2.89436 3.16768 3.39860 3.51048 3.55815 3.69652 4.07603 4.50142 4.59142 4.68267 4.71127 4.89849 4.93251 4.94668 4.95664 5.09775 5.14790 5.18720 5.24873 5.27181 5.31094 5.37296 5.41831 5.44246 5.50332 5.54267 5.58969 5.64422 5.68056 5.77431 5.80150 5.82166 5.98834 6.02604 6.14456 6.18045 6.27420 6.32325 6.39421 6.48508 6.79553 6.94996 7.34177 7.52028 7.73992 7.79638 8.32836 8.36722 8.76720 9.21088 10.07566 10.21538 11.38777 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.007482 B = 0.002825 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3741.568112 B = 9908.915569 C =12897.725349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 C -0.204 4.204 3 C -0.179 4.179 4 C -0.009 4.009 5 C -0.097 4.097 6 C -0.137 4.137 7 C 0.526 3.474 8 O -0.555 6.555 9 N -0.613 5.613 10 C 0.121 3.879 11 C -0.030 4.030 12 H 0.094 0.906 13 C 0.037 3.963 14 C -0.064 4.064 15 N -0.467 5.467 16 C 0.076 3.924 17 C 0.178 3.822 18 N -0.471 5.471 19 C 0.193 3.807 20 H 0.065 0.935 21 N -0.715 5.715 22 C -0.336 4.336 23 H 0.064 0.936 24 C -0.039 4.039 25 N -0.939 5.939 26 Si 1.081 2.919 27 H -0.296 1.296 28 H -0.295 1.295 29 H -0.288 1.288 30 C 0.071 3.929 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.067 0.933 41 H 0.066 0.934 42 H 0.170 0.830 43 H 0.073 0.927 44 H 0.082 0.918 45 H 0.085 0.915 46 H 0.202 0.798 47 H 0.373 0.627 48 H 0.258 0.742 49 H 0.071 0.929 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.652 -5.983 7.061 19.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.204 4.204 3 C -0.179 4.179 4 C -0.046 4.046 5 C -0.135 4.135 6 C -0.177 4.177 7 C 0.315 3.685 8 O -0.434 6.434 9 N -0.347 5.347 10 C -0.002 4.002 11 C -0.051 4.051 12 H 0.112 0.888 13 C -0.093 4.093 14 C -0.196 4.196 15 N -0.151 5.151 16 C -0.067 4.067 17 C -0.104 4.104 18 N -0.188 5.188 19 C 0.080 3.920 20 H 0.083 0.917 21 N -0.355 5.355 22 C -0.467 4.467 23 H 0.082 0.918 24 C -0.238 4.238 25 N -0.583 5.583 26 Si 0.912 3.088 27 H -0.224 1.224 28 H -0.222 1.222 29 H -0.214 1.214 30 C -0.055 4.055 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.114 0.886 39 H 0.114 0.886 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.187 0.813 43 H 0.091 0.909 44 H 0.101 0.899 45 H 0.104 0.896 46 H 0.218 0.782 47 H 0.207 0.793 48 H 0.070 0.930 49 H 0.090 0.910 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -15.377 -5.778 6.215 17.563 hybrid contribution -1.547 -0.498 1.441 2.172 sum -16.924 -6.276 7.656 19.607 Atomic orbital electron populations 1.18818 0.84823 1.02929 1.02797 1.22391 0.93964 1.02311 1.01730 1.22375 0.93673 1.00827 1.01014 1.18739 0.84339 1.03473 0.98020 1.21268 0.93119 1.04098 0.94970 1.21646 0.96796 1.04941 0.94310 1.20318 0.80538 0.76050 0.91545 1.90671 1.54684 1.51297 1.46768 1.48552 1.05227 1.72270 1.08663 1.21853 0.91593 1.01873 0.84914 1.20727 0.91614 0.98910 0.93805 0.88750 1.20119 0.91617 0.97329 1.00227 1.22339 0.96510 1.00642 1.00081 1.45344 1.12705 1.24041 1.33042 1.21972 1.04049 0.86631 0.94053 1.24972 0.93014 0.90981 1.01452 1.70193 1.15401 1.22963 1.10245 1.21182 0.86155 0.96874 0.87785 0.91712 1.42225 1.23273 1.29849 1.40172 1.20001 1.08249 1.07336 1.11076 0.91821 1.25718 0.94798 0.99707 1.03552 1.70819 1.41478 1.16354 1.29658 0.83229 0.75448 0.74719 0.75416 1.22433 1.22153 1.21386 1.23562 0.88241 1.02035 0.91630 0.90398 0.90359 0.90344 0.89403 0.89418 0.90927 0.90911 0.88577 0.88574 0.91511 0.91546 0.81310 0.90853 0.89930 0.89601 0.78165 0.79314 0.93023 0.91050 0.90830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.26 10.32 34.37 0.35 0.09 16 2 C -0.20 -2.26 14.13 -37.12 -0.52 -2.79 16 3 C -0.18 -2.09 13.34 -37.12 -0.50 -2.59 16 4 C -0.01 -0.09 5.70 -29.52 -0.17 -0.26 16 5 C -0.10 -1.08 4.46 -26.73 -0.12 -1.20 16 6 C -0.14 -1.57 4.71 -27.88 -0.13 -1.70 16 7 C 0.53 7.99 7.85 -10.99 -0.09 7.91 16 8 O -0.56 -10.03 16.31 5.55 0.09 -9.94 16 9 N -0.61 -9.44 3.33 -170.49 -0.57 -10.00 16 10 C 0.12 1.85 6.41 -3.06 -0.02 1.83 16 11 C -0.03 -0.51 3.10 -89.93 -0.28 -0.79 16 12 H 0.09 1.73 8.00 -51.93 -0.42 1.31 16 13 C 0.04 0.64 6.16 -82.85 -0.51 0.13 16 14 C -0.06 -0.92 10.57 -16.56 -0.17 -1.10 16 15 N -0.47 -5.83 3.15 -125.99 -0.40 -6.23 16 16 C 0.08 0.55 11.18 59.85 0.67 1.22 16 17 C 0.18 2.58 12.56 -90.38 -1.14 1.44 16 18 N -0.47 -8.82 11.25 -10.87 -0.12 -8.94 16 19 C 0.19 3.73 3.13 -65.79 -0.21 3.52 16 20 H 0.06 1.33 8.01 -51.93 -0.42 0.91 16 21 N -0.71 -17.22 5.26 -51.36 -0.27 -17.49 16 22 C -0.34 -9.08 9.97 -15.06 -0.15 -9.23 16 23 H 0.06 1.70 7.83 -52.49 -0.41 1.29 16 24 C -0.04 -1.11 5.50 -17.43 -0.10 -1.21 16 25 N -0.94 -28.67 13.70 55.49 0.76 -27.91 16 26 Si 1.08 25.57 29.92 -169.99 -5.09 20.48 16 27 H -0.30 -6.91 7.11 56.52 0.40 -6.51 16 28 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 29 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 30 C 0.07 1.18 6.39 -2.51 -0.02 1.16 16 31 H 0.08 0.43 8.14 -51.92 -0.42 0.01 16 32 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.07 0.89 8.10 -51.93 -0.42 0.47 16 37 H 0.07 0.90 8.10 -51.93 -0.42 0.48 16 38 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 39 H 0.10 0.98 7.85 -51.93 -0.41 0.57 16 40 H 0.07 0.97 5.94 -51.93 -0.31 0.66 16 41 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.17 2.08 6.88 -52.49 -0.36 1.72 16 43 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.20 2.12 8.06 -52.48 -0.42 1.70 16 47 H 0.37 9.54 6.57 -40.82 -0.27 9.28 16 48 H 0.26 7.83 6.77 -40.82 -0.28 7.56 16 49 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 50 H 0.07 1.15 7.48 -51.93 -0.39 0.76 16 LS Contribution 418.85 15.07 6.31 6.31 Total: -1.00 -36.55 418.85 -10.33 -46.88 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: -7.96 Total: 10.39 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: -3.09 Total: -3.56 kcal Atomic # 7 Polarization: -69.97 SS G_CDS: -0.60 Total: -70.57 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: 0.09 Total: -9.94 kcal Atomic # 14 Polarization: 25.57 SS G_CDS: -5.09 Total: 20.48 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -36.55 -10.33 -46.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130644650.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.203 kcal (2) G-P(sol) polarization free energy of solvation -36.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds