Wall clock time and date at job start Wed Apr 1 2020 03:54:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47200 * 1 3 3 C 1.17393 * 179.97438 * 2 1 4 4 C 1.47200 * 179.97438 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.47133 * 269.40912 * 4 3 2 6 6 C 1.53006 * 109.47401 * 180.02562 * 5 4 3 7 7 C 1.50696 * 109.47087 * 179.97438 * 6 5 4 8 8 O 1.21286 * 120.00323 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00096 * 179.97438 * 7 6 5 10 10 C 1.47020 * 125.65045 * 180.02562 * 9 7 6 11 11 C 1.54332 * 107.27093 * 179.00003 * 10 9 7 12 12 H 1.08996 * 110.71916 * 96.16904 * 11 10 9 13 13 C 1.50693 * 110.86758 * 219.37275 * 11 10 9 14 14 C 1.34669 * 125.99551 * 28.32526 * 13 11 10 15 15 N 1.36879 * 106.81914 * 179.84663 * 14 13 11 16 16 C 1.46501 * 126.40131 * 180.11892 * 15 14 13 17 17 C 1.35045 * 107.20438 * 0.40886 * 15 14 13 18 18 N 1.30495 * 108.70433 * 359.74580 * 17 15 14 19 19 C 1.55163 * 102.93954 * 337.80436 * 11 10 9 20 20 H 1.08998 * 111.00125 * 277.39080 * 19 11 10 21 21 N 1.46498 * 111.00200 * 153.57572 * 19 11 10 22 22 C 1.36936 * 119.99972 * 158.17778 * 21 19 11 23 23 H 1.08002 * 119.99631 * 0.02562 * 22 21 19 24 24 C 1.38806 * 120.00202 * 180.02562 * 22 21 19 25 25 N 1.31624 * 120.00103 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 120.00201 * 179.72570 * 24 22 21 27 27 H 1.48501 * 109.47085 * 270.27640 * 26 24 22 28 28 H 1.48497 * 109.46789 * 30.27649 * 26 24 22 29 29 H 1.48490 * 109.47245 * 150.27799 * 26 24 22 30 30 C 1.47472 * 125.62459 * 0.02920 * 9 7 6 31 31 H 1.09011 * 109.46855 * 90.59394 * 1 2 3 32 32 H 1.08996 * 109.47107 * 210.58586 * 1 2 3 33 33 H 1.08997 * 109.47858 * 330.59443 * 1 2 3 34 34 H 1.09000 * 109.47422 * 149.41054 * 4 3 2 35 35 H 1.09004 * 109.47484 * 29.40486 * 4 3 2 36 36 H 1.09000 * 109.47567 * 59.99995 * 5 4 3 37 37 H 1.09000 * 109.47087 * 300.00136 * 5 4 3 38 38 H 1.08995 * 109.46629 * 59.99753 * 6 5 4 39 39 H 1.09000 * 109.46931 * 300.00011 * 6 5 4 40 40 H 1.08995 * 109.88668 * 59.58041 * 10 9 7 41 41 H 1.08999 * 110.00942 * 298.48171 * 10 9 7 42 42 H 1.07996 * 126.58846 * 359.96377 * 14 13 11 43 43 H 1.09001 * 109.47464 * 270.32745 * 16 15 14 44 44 H 1.09007 * 109.46924 * 30.31996 * 16 15 14 45 45 H 1.08994 * 109.47310 * 150.32076 * 16 15 14 46 46 H 1.08008 * 125.65056 * 179.71464 * 17 15 14 47 47 H 0.97001 * 120.00384 * 338.18595 * 21 19 11 48 48 H 0.97005 * 119.99717 * 359.71965 * 25 24 22 49 49 H 1.09003 * 110.34688 * 85.22902 * 30 9 7 50 50 H 1.09000 * 110.40730 * 322.89231 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6459 0.0005 0.0000 4 6 4.1179 0.0018 0.0000 5 6 4.6279 0.0172 1.4424 6 6 6.1580 0.0192 1.4425 7 6 6.6602 0.0349 2.8632 8 8 5.8721 0.0432 3.7850 9 7 7.9853 0.0388 3.1096 10 6 8.6093 0.0531 4.4407 11 6 10.1380 0.0267 4.2303 12 1 10.5500 1.0351 4.2683 13 6 10.8051 -0.8586 5.2512 14 6 10.2499 -1.9254 5.8572 15 7 11.1971 -2.4386 6.7016 16 6 11.0450 -3.6082 7.5706 17 6 12.2958 -1.6615 6.5889 18 7 12.0542 -0.7186 5.7198 19 6 10.2825 -0.5721 2.8062 20 1 10.2269 -1.6603 2.8326 21 7 11.5269 -0.1278 2.1736 22 6 12.0694 -0.8526 1.1463 23 1 11.5797 -1.7516 0.8021 24 6 13.2488 -0.4320 0.5472 25 7 13.8460 0.6633 0.9669 26 14 13.9930 -1.4249 -0.8492 27 1 14.9222 -2.4413 -0.2935 28 1 12.9104 -2.1046 -1.6049 29 1 14.7379 -0.5183 -1.7591 30 6 9.0489 0.0293 2.0881 31 1 -0.3633 -0.0107 -1.0277 32 1 -0.3633 -0.8846 0.5229 33 1 -0.3635 0.8952 0.5045 34 1 4.4805 0.8868 -0.5230 35 1 4.4821 -0.8931 -0.5046 36 1 4.2654 -0.8678 1.9655 37 1 4.2638 0.9121 1.9471 38 1 6.5201 0.9043 0.9196 39 1 6.5225 -0.8755 0.9378 40 1 8.2977 -0.8253 5.0058 41 1 8.3245 0.9586 4.9764 42 1 9.2502 -2.3044 5.7047 43 1 10.6569 -3.2933 8.5393 44 1 10.3508 -4.3131 7.1129 45 1 12.0140 -4.0886 7.7061 46 1 13.2212 -1.7976 7.1291 47 1 11.9667 0.6797 2.4825 48 1 13.4597 1.1787 1.6922 49 1 9.2624 1.0446 1.7539 50 1 8.7593 -0.5960 1.2436 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001130644650.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:24 Heat of formation + Delta-G solvation = 62.098515 kcal Electronic energy + Delta-G solvation = -29343.919781 eV Core-core repulsion = 25372.795935 eV Total energy + Delta-G solvation = -3971.123846 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.03350 -41.13489 -39.02463 -36.64800 -36.13549 -35.08974 -34.23775 -33.35790 -32.26501 -30.60528 -29.44798 -28.79532 -27.90330 -27.11613 -25.69282 -24.54126 -22.83877 -22.48811 -22.04832 -20.66816 -20.17248 -19.35468 -18.43912 -17.93586 -17.41377 -17.22916 -16.66185 -16.56461 -16.40060 -15.92851 -15.62068 -15.39258 -15.16257 -14.91222 -14.76845 -14.63238 -14.48934 -14.39177 -14.16380 -13.99740 -13.88098 -13.60412 -13.40254 -13.23482 -13.18903 -12.94236 -12.73482 -12.56526 -12.51269 -12.36766 -11.95383 -11.84237 -11.82922 -11.25254 -11.09496 -10.91462 -10.79981 -10.65361 -10.58055 -10.42789 -9.73227 -9.36579 -9.00552 -8.31195 -5.26126 1.11140 1.58636 1.61289 1.69146 1.71771 1.77940 1.85530 1.94252 2.00610 2.17180 2.75123 3.24459 3.37070 3.43585 3.58235 3.78041 3.85495 3.93228 3.99848 4.04639 4.05016 4.09304 4.20475 4.31201 4.31960 4.42217 4.45523 4.53001 4.59186 4.62751 4.67550 4.70684 4.71763 4.75371 4.80811 4.83814 4.86881 4.91944 4.98305 5.12386 5.16463 5.17889 5.27460 5.30692 5.32834 5.65361 5.78009 6.34712 6.48099 6.55613 6.72731 7.08854 7.13845 7.22297 8.02793 8.16326 9.19997 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.007482 B = 0.002825 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3741.568112 B = 9908.915569 C =12897.725349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 C -0.216 4.216 3 C -0.215 4.215 4 C -0.005 4.005 5 C -0.087 4.087 6 C -0.131 4.131 7 C 0.524 3.476 8 O -0.585 6.585 9 N -0.612 5.612 10 C 0.128 3.872 11 C -0.017 4.017 12 H 0.072 0.928 13 C -0.002 4.002 14 C -0.053 4.053 15 N -0.460 5.460 16 C 0.068 3.932 17 C 0.176 3.824 18 N -0.532 5.532 19 C 0.189 3.811 20 H 0.055 0.945 21 N -0.727 5.727 22 C -0.323 4.323 23 H 0.069 0.931 24 C -0.102 4.102 25 N -0.975 5.975 26 Si 1.127 2.873 27 H -0.292 1.292 28 H -0.267 1.267 29 H -0.296 1.296 30 C 0.089 3.911 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.058 0.942 37 H 0.056 0.944 38 H 0.113 0.887 39 H 0.117 0.883 40 H 0.078 0.922 41 H 0.067 0.933 42 H 0.191 0.809 43 H 0.093 0.907 44 H 0.095 0.905 45 H 0.106 0.894 46 H 0.233 0.767 47 H 0.361 0.639 48 H 0.244 0.756 49 H 0.064 0.936 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.294 -8.149 6.886 21.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.216 4.216 3 C -0.215 4.215 4 C -0.041 4.041 5 C -0.125 4.125 6 C -0.170 4.170 7 C 0.315 3.685 8 O -0.466 6.466 9 N -0.345 5.345 10 C 0.004 3.996 11 C -0.038 4.038 12 H 0.090 0.910 13 C -0.132 4.132 14 C -0.187 4.187 15 N -0.142 5.142 16 C -0.073 4.073 17 C -0.107 4.107 18 N -0.250 5.250 19 C 0.078 3.922 20 H 0.073 0.927 21 N -0.367 5.367 22 C -0.455 4.455 23 H 0.087 0.913 24 C -0.294 4.294 25 N -0.623 5.623 26 Si 0.952 3.048 27 H -0.220 1.220 28 H -0.192 1.192 29 H -0.222 1.222 30 C -0.037 4.037 31 H 0.113 0.887 32 H 0.109 0.891 33 H 0.108 0.892 34 H 0.120 0.880 35 H 0.121 0.879 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.131 0.869 39 H 0.135 0.865 40 H 0.096 0.904 41 H 0.085 0.915 42 H 0.208 0.792 43 H 0.111 0.889 44 H 0.114 0.886 45 H 0.125 0.875 46 H 0.249 0.751 47 H 0.193 0.807 48 H 0.054 0.946 49 H 0.082 0.918 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -17.089 -7.992 6.078 19.821 hybrid contribution -1.130 0.117 1.660 2.012 sum -18.219 -7.875 7.738 21.304 Atomic orbital electron populations 1.19061 0.82536 1.04028 1.04214 1.23412 0.95422 1.01784 1.00939 1.23001 0.94780 1.01708 1.02051 1.18764 0.83498 1.04878 0.96954 1.21139 0.92890 1.02608 0.95878 1.21700 0.96762 1.06679 0.91876 1.20978 0.79805 0.74871 0.92805 1.90661 1.55147 1.52629 1.48143 1.48555 1.05312 1.72378 1.08231 1.21784 0.90161 1.02430 0.85189 1.20506 0.92814 0.97670 0.92835 0.90999 1.20223 0.92060 0.99081 1.01789 1.22581 0.97335 0.99502 0.99264 1.45617 1.11435 1.24613 1.32536 1.22370 1.05894 0.85047 0.93985 1.25534 0.94395 0.90222 1.00530 1.70098 1.16701 1.25656 1.12595 1.21289 0.85289 0.96377 0.89224 0.92667 1.42334 1.24936 1.29333 1.40077 1.20323 1.07632 1.06894 1.10608 0.91263 1.27078 0.96026 1.00203 1.06052 1.70939 1.42664 1.18086 1.30604 0.82637 0.75506 0.73549 0.73079 1.21993 1.19171 1.22229 1.23160 0.87218 1.01620 0.91714 0.88745 0.89145 0.89200 0.88036 0.87865 0.92310 0.92562 0.86872 0.86524 0.90356 0.91500 0.79226 0.88883 0.88622 0.87530 0.75075 0.80692 0.94572 0.91756 0.89232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.52 10.32 70.18 0.72 0.20 16 2 C -0.22 -4.56 14.13 31.13 0.44 -4.12 16 3 C -0.22 -4.84 13.34 31.13 0.42 -4.43 16 4 C 0.00 -0.08 5.70 28.79 0.16 0.08 16 5 C -0.09 -1.85 4.46 30.60 0.14 -1.72 16 6 C -0.13 -2.73 4.71 29.85 0.14 -2.59 16 7 C 0.52 15.25 7.85 87.66 0.69 15.94 16 8 O -0.58 -20.73 16.31 -3.05 -0.05 -20.78 16 9 N -0.61 -18.21 3.33 -811.70 -2.70 -20.91 16 10 C 0.13 3.87 6.41 86.73 0.56 4.43 16 11 C -0.02 -0.61 3.10 -10.35 -0.03 -0.64 16 12 H 0.07 2.81 8.00 -2.39 -0.02 2.79 16 13 C 0.00 -0.09 6.16 41.39 0.25 0.17 16 14 C -0.05 -1.47 10.57 83.09 0.88 -0.59 16 15 N -0.46 -10.58 3.15 -552.53 -1.74 -12.32 16 16 C 0.07 0.76 11.18 127.77 1.43 2.18 16 17 C 0.18 4.94 12.56 180.26 2.26 7.21 16 18 N -0.53 -20.37 11.25 -188.31 -2.12 -22.49 16 19 C 0.19 7.36 3.13 46.38 0.15 7.50 16 20 H 0.06 2.25 8.01 -2.39 -0.02 2.23 16 21 N -0.73 -35.89 5.26 -316.40 -1.66 -37.55 16 22 C -0.32 -17.56 9.97 84.03 0.84 -16.73 16 23 H 0.07 3.63 7.83 -2.91 -0.02 3.60 16 24 C -0.10 -5.85 5.50 84.86 0.47 -5.38 16 25 N -0.98 -61.30 13.70 21.65 0.30 -61.00 16 26 Si 1.13 51.42 29.92 68.60 2.05 53.48 16 27 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 28 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 29 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 30 C 0.09 2.85 6.39 86.84 0.55 3.41 16 31 H 0.09 0.84 8.14 -2.38 -0.02 0.82 16 32 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.10 1.50 8.14 -2.39 -0.02 1.49 16 35 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.06 1.40 8.10 -2.39 -0.02 1.38 16 37 H 0.06 1.37 8.10 -2.39 -0.02 1.35 16 38 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 39 H 0.12 2.01 7.85 -2.39 -0.02 1.99 16 40 H 0.08 2.19 5.94 -2.39 -0.01 2.18 16 41 H 0.07 2.02 8.14 -2.39 -0.02 2.01 16 42 H 0.19 4.26 6.88 -2.91 -0.02 4.24 16 43 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.10 0.87 8.14 -2.38 -0.02 0.85 16 45 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 46 H 0.23 4.55 8.06 -2.91 -0.02 4.52 16 47 H 0.36 19.41 6.57 -92.71 -0.61 18.81 16 48 H 0.24 15.49 6.77 -92.70 -0.63 14.86 16 49 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 50 H 0.09 2.61 7.48 -2.39 -0.02 2.59 16 Total: -1.00 -82.15 418.85 4.61 -77.53 By element: Atomic # 1 Polarization: 38.64 SS G_CDS: 0.48 Total: 39.11 kcal Atomic # 6 Polarization: -5.13 SS G_CDS: 10.06 Total: 4.93 kcal Atomic # 7 Polarization: -146.35 SS G_CDS: -7.93 Total: -154.28 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: -0.05 Total: -20.78 kcal Atomic # 14 Polarization: 51.42 SS G_CDS: 2.05 Total: 53.48 kcal Total: -82.15 4.61 -77.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130644650.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.633 kcal (2) G-P(sol) polarization free energy of solvation -82.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds