Wall clock time and date at job start Wed Apr 1 2020 03:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.35041 * 126.39740 * 2 1 4 4 N 1.30501 * 108.69899 * 179.97438 * 3 2 1 5 5 C 1.34126 * 109.25726 * 359.75796 * 4 3 2 6 6 C 1.34670 * 108.01436 * 0.39661 * 5 4 3 7 7 C 1.50708 * 126.58718 * 179.87807 * 6 5 4 8 8 H 1.08996 * 110.65738 * 201.49492 * 7 6 5 9 9 C 1.54593 * 110.99114 * 78.33391 * 7 6 5 10 10 N 1.48119 * 103.42415 * 204.37541 * 9 7 6 11 11 C 1.34776 * 127.03360 * 219.28497 * 10 9 7 12 12 O 1.21616 * 119.99968 * 359.71350 * 11 10 9 13 13 C 1.43199 * 119.99978 * 179.70548 * 11 10 9 14 14 C 8.17768 * 93.29238 * 172.00305 * 2 1 3 15 15 C 9.53490 * 94.23277 * 175.58770 * 2 1 3 16 16 C 1.53006 * 109.47093 * 153.54140 * 15 14 13 17 17 C 1.52999 * 109.47112 * 33.54772 * 15 14 13 18 18 C 1.52997 * 109.47145 * 273.54189 * 15 14 13 19 19 C 1.47489 * 105.93069 * 39.02505 * 10 9 7 20 20 C 1.54003 * 107.08617 * 334.77788 * 19 10 9 21 21 H 1.08997 * 110.32598 * 120.19236 * 20 19 10 22 22 N 1.46493 * 110.32736 * 242.41717 * 20 19 10 23 23 C 1.36944 * 119.99769 * 273.54268 * 22 20 19 24 24 H 1.08002 * 119.99805 * 0.02562 * 23 22 20 25 25 C 1.38811 * 119.99827 * 179.97438 * 23 22 20 26 26 N 1.31614 * 120.00041 * 0.02562 * 25 23 22 27 27 Si 1.86800 * 119.99610 * 180.02562 * 25 23 22 28 28 H 1.48498 * 109.47354 * 0.02562 * 27 25 23 29 29 H 1.48501 * 109.47227 * 120.00549 * 27 25 23 30 30 H 1.48501 * 109.47162 * 240.00238 * 27 25 23 31 31 H 1.08993 * 109.47341 * 270.00225 * 1 2 3 32 32 H 1.09001 * 109.47002 * 30.00105 * 1 2 3 33 33 H 1.08995 * 109.46995 * 149.99918 * 1 2 3 34 34 H 1.08001 * 125.65295 * 0.02576 * 3 2 1 35 35 H 1.07990 * 125.99259 * 180.24758 * 5 4 3 36 36 H 1.08999 * 110.61709 * 85.86175 * 9 7 6 37 37 H 1.08998 * 110.54875 * 322.85508 * 9 7 6 38 38 H 1.09001 * 109.46801 * 300.00145 * 16 15 14 39 39 H 1.09001 * 109.46998 * 59.99741 * 16 15 14 40 40 H 1.09000 * 109.47050 * 180.02562 * 16 15 14 41 41 H 1.09000 * 109.47160 * 180.02562 * 17 15 14 42 42 H 1.09002 * 109.46719 * 299.99744 * 17 15 14 43 43 H 1.08993 * 109.47839 * 59.99586 * 17 15 14 44 44 H 1.09001 * 109.47375 * 299.99961 * 18 15 14 45 45 H 1.09002 * 109.46777 * 60.00516 * 18 15 14 46 46 H 1.09000 * 109.47140 * 179.97438 * 18 15 14 47 47 H 1.09002 * 109.90988 * 94.14151 * 19 10 9 48 48 H 1.09003 * 109.90860 * 215.22588 * 19 10 9 49 49 H 0.96994 * 120.00336 * 93.54647 * 22 20 19 50 50 H 0.97002 * 119.99892 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2663 1.0870 0.0000 4 7 3.5096 0.6902 0.0006 5 6 3.5461 -0.6505 0.0063 6 6 2.2772 -1.1017 0.0005 7 6 1.8363 -2.5428 0.0012 8 1 0.8183 -2.6337 -0.3777 9 6 1.9458 -3.1548 1.4166 10 7 2.0807 -4.6063 1.1542 11 6 1.5197 -5.6131 1.8528 12 8 0.8199 -5.3682 2.8168 13 6 1.7475 -6.9711 1.4599 14 6 1.9347 -8.0848 1.1358 15 6 2.1688 -9.4807 0.7315 16 6 3.4944 -9.5767 -0.0265 17 6 1.0280 -9.9473 -0.1750 18 6 2.2274 -10.3690 1.9758 19 6 2.9494 -4.7242 -0.0319 20 6 2.8088 -3.4133 -0.8279 21 1 3.7762 -2.9193 -0.9178 22 7 2.2475 -3.6810 -2.1543 23 6 3.0740 -4.0233 -3.1911 24 1 4.1396 -4.0962 -3.0308 25 6 2.5421 -4.2775 -4.4479 26 7 1.2436 -4.1891 -4.6430 27 14 3.6696 -4.7450 -5.8620 28 1 5.0755 -4.7757 -5.3849 29 1 3.2915 -6.0868 -6.3737 30 1 3.5379 -3.7446 -6.9516 31 1 -0.3633 0.0000 1.0276 32 1 -0.3633 0.8900 -0.5139 33 1 -0.3633 -0.8899 -0.5138 34 1 1.9335 2.1144 0.0004 35 1 4.4367 -1.2611 0.0118 36 1 1.0441 -2.9505 1.9939 37 1 2.8278 -2.7734 1.9311 38 1 3.4526 -8.9438 -0.9130 39 1 4.3071 -9.2442 0.6192 40 1 3.6675 -10.6103 -0.3263 41 1 1.2011 -10.9811 -0.4740 42 1 0.0837 -9.8789 0.3650 43 1 0.9862 -9.3145 -1.0615 44 1 3.0401 -10.0366 2.6217 45 1 1.2830 -10.3007 2.5158 46 1 2.4003 -11.4027 1.6765 47 1 3.9853 -4.8607 0.2787 48 1 2.6308 -5.5688 -0.6429 49 1 1.2905 -3.6159 -2.2981 50 1 0.8719 -4.3663 -5.5213 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001130985167.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:29 Heat of formation + Delta-G solvation = 92.721397 kcal Electronic energy + Delta-G solvation = -30303.084970 eV Core-core repulsion = 26333.289032 eV Total energy + Delta-G solvation = -3969.795938 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.94352 -39.74854 -37.68360 -37.41857 -34.11659 -33.86702 -32.64947 -31.74039 -30.70302 -27.98355 -27.50674 -27.47161 -27.41632 -26.85841 -24.95277 -23.58888 -22.29086 -21.62733 -20.50189 -20.10644 -19.33939 -17.76331 -17.30772 -16.75978 -16.20053 -15.76775 -15.60170 -15.47926 -14.85298 -14.47733 -14.40488 -14.33735 -13.72976 -13.59607 -13.47518 -13.27870 -13.25602 -12.82590 -12.69621 -12.62114 -12.55102 -12.36317 -12.03801 -11.87572 -11.84472 -11.83952 -11.45132 -11.37795 -11.34026 -10.92522 -10.88932 -10.64510 -10.35233 -10.20947 -10.14101 -9.99793 -9.84091 -9.71374 -9.37208 -9.14472 -8.57350 -8.06565 -7.13115 -5.89995 -3.20743 1.70927 2.20892 2.38695 2.92000 3.14861 3.35829 3.40481 3.42727 3.44215 3.68365 4.05655 4.46461 4.72387 4.75129 4.76803 4.78407 4.79305 4.87310 4.93235 5.00470 5.12659 5.30129 5.36242 5.41725 5.42335 5.47584 5.49570 5.51788 5.59400 5.61649 5.67987 5.72696 5.73279 5.78611 5.87526 5.90410 5.93257 6.06589 6.13710 6.14502 6.16837 6.27412 6.38740 6.57139 6.74223 6.97368 7.36232 7.37204 7.58689 7.63461 8.19904 8.26298 8.28723 9.39079 9.90688 10.25407 11.32057 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.007223 B = 0.004113 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3875.363904 B = 6805.230406 C = 9742.367907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.457 5.457 3 C 0.171 3.829 4 N -0.494 5.494 5 C -0.020 4.020 6 C 0.006 3.994 7 C -0.037 4.037 8 H 0.089 0.911 9 C 0.123 3.877 10 N -0.604 5.604 11 C 0.652 3.348 12 O -0.540 6.540 13 C -0.212 4.212 14 C -0.071 4.071 15 C 0.039 3.961 16 C -0.143 4.143 17 C -0.143 4.143 18 C -0.141 4.141 19 C 0.071 3.929 20 C 0.182 3.818 21 H 0.078 0.922 22 N -0.711 5.711 23 C -0.245 4.245 24 H 0.074 0.926 25 C -0.007 4.007 26 N -0.930 5.930 27 Si 0.906 3.094 28 H -0.278 1.278 29 H -0.291 1.291 30 H -0.291 1.291 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.201 0.799 35 H 0.168 0.832 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.068 0.932 39 H 0.060 0.940 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.060 0.940 43 H 0.067 0.933 44 H 0.060 0.940 45 H 0.061 0.939 46 H 0.068 0.932 47 H 0.062 0.938 48 H 0.088 0.912 49 H 0.385 0.615 50 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.380 -2.994 11.629 12.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.140 5.140 3 C -0.110 4.110 4 N -0.212 5.212 5 C -0.167 4.167 6 C -0.109 4.109 7 C -0.058 4.058 8 H 0.108 0.892 9 C 0.000 4.000 10 N -0.336 5.336 11 C 0.442 3.558 12 O -0.419 6.419 13 C -0.215 4.215 14 C -0.073 4.073 15 C 0.039 3.961 16 C -0.200 4.200 17 C -0.200 4.200 18 C -0.198 4.198 19 C -0.054 4.054 20 C 0.069 3.931 21 H 0.095 0.905 22 N -0.351 5.351 23 C -0.376 4.376 24 H 0.092 0.908 25 C -0.203 4.203 26 N -0.577 5.577 27 Si 0.736 3.264 28 H -0.203 1.203 29 H -0.218 1.218 30 H -0.218 1.218 31 H 0.093 0.907 32 H 0.105 0.895 33 H 0.107 0.893 34 H 0.217 0.783 35 H 0.185 0.815 36 H 0.101 0.899 37 H 0.098 0.902 38 H 0.087 0.913 39 H 0.079 0.921 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.079 0.921 43 H 0.086 0.914 44 H 0.079 0.921 45 H 0.080 0.920 46 H 0.087 0.913 47 H 0.080 0.920 48 H 0.106 0.894 49 H 0.219 0.781 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.118 -2.423 12.025 12.267 hybrid contribution -0.595 -0.668 -1.074 1.398 sum -0.714 -3.090 10.951 11.401 Atomic orbital electron populations 1.22039 0.76903 1.04999 1.03292 1.45220 1.07471 1.06730 1.54593 1.24798 0.85782 0.93213 1.07223 1.70238 1.19345 1.12091 1.19498 1.21964 0.95745 0.90836 1.08185 1.20783 0.91107 0.88603 1.10366 1.20884 1.01534 0.87709 0.95717 0.89241 1.22368 1.02738 0.78865 0.96051 1.48548 1.48931 1.05761 1.30327 1.14206 0.79154 0.80712 0.81721 1.90814 1.39240 1.84133 1.27763 1.20518 1.04413 0.93436 1.03107 1.22465 0.95155 0.93874 0.95856 1.17915 0.97432 0.84500 0.96303 1.21917 0.94708 1.02745 1.00627 1.21908 0.96910 1.01696 0.99471 1.21903 1.02708 0.98959 0.96206 1.23564 0.92958 1.03438 0.85474 1.21149 0.95897 0.90208 0.85805 0.90466 1.42442 1.07189 1.82073 1.03421 1.19267 0.90558 1.39324 0.88450 0.90768 1.24739 0.95801 1.02087 0.97695 1.69664 1.10028 1.55419 1.22594 0.86144 0.79830 0.77731 0.82644 1.20330 1.21809 1.21791 0.90653 0.89523 0.89348 0.78266 0.81496 0.89934 0.90197 0.91293 0.92059 0.91299 0.91239 0.92072 0.91401 0.92071 0.92024 0.91282 0.91973 0.89391 0.78111 0.93437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.68 11.00 59.85 0.66 1.34 16 2 N -0.46 -6.11 3.15 -121.37 -0.38 -6.49 16 3 C 0.17 2.31 12.56 -90.38 -1.14 1.18 16 4 N -0.49 -8.13 11.25 -14.67 -0.17 -8.30 16 5 C -0.02 -0.32 10.87 -17.81 -0.19 -0.51 16 6 C 0.01 0.10 5.95 -81.60 -0.49 -0.39 16 7 C -0.04 -0.57 3.04 -90.08 -0.27 -0.85 16 8 H 0.09 1.46 6.70 -51.93 -0.35 1.12 16 9 C 0.12 1.78 6.51 -2.31 -0.02 1.77 16 10 N -0.60 -9.90 3.29 -172.84 -0.57 -10.47 16 11 C 0.65 11.77 7.73 -14.34 -0.11 11.66 16 12 O -0.54 -10.93 17.29 5.26 0.09 -10.84 16 13 C -0.21 -3.58 12.60 -38.83 -0.49 -4.07 16 14 C -0.07 -1.04 11.77 -37.11 -0.44 -1.48 16 15 C 0.04 0.42 0.95 -157.29 -0.15 0.28 16 16 C -0.14 -1.44 8.43 37.16 0.31 -1.12 16 17 C -0.14 -1.47 8.43 37.16 0.31 -1.16 16 18 C -0.14 -1.25 8.43 37.16 0.31 -0.94 16 19 C 0.07 1.20 6.53 -2.98 -0.02 1.18 16 20 C 0.18 3.26 3.16 -66.56 -0.21 3.05 16 21 H 0.08 1.39 6.26 -51.93 -0.33 1.06 16 22 N -0.71 -16.26 5.08 -52.09 -0.26 -16.52 16 23 C -0.25 -6.29 9.97 -15.06 -0.15 -6.44 16 24 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 25 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 26 N -0.93 -26.67 13.06 55.49 0.72 -25.95 16 27 Si 0.91 21.44 29.55 -169.99 -5.02 16.42 16 28 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 29 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 30 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.09 0.93 7.13 -51.93 -0.37 0.56 16 34 H 0.20 1.85 8.06 -52.49 -0.42 1.43 16 35 H 0.17 2.50 7.20 -52.49 -0.38 2.12 16 36 H 0.08 1.19 7.85 -51.93 -0.41 0.78 16 37 H 0.08 1.07 8.04 -51.93 -0.42 0.65 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 44 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 48 H 0.09 1.68 7.49 -51.93 -0.39 1.29 16 49 H 0.38 9.54 7.54 -40.82 -0.31 9.23 16 50 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 417.56 15.07 6.29 6.29 Total: -1.00 -33.22 417.56 -9.45 -42.67 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: -7.99 Total: 9.97 kcal Atomic # 6 Polarization: 5.39 SS G_CDS: -2.17 Total: 3.22 kcal Atomic # 7 Polarization: -67.07 SS G_CDS: -0.66 Total: -67.73 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: 0.09 Total: -10.84 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -33.22 -9.45 -42.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130985167.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.393 kcal (2) G-P(sol) polarization free energy of solvation -33.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds