Wall clock time and date at job start Wed Apr 1 2020 03:54:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.35041 * 126.39740 * 2 1 4 4 N 1.30501 * 108.69899 * 179.97438 * 3 2 1 5 5 C 1.34126 * 109.25726 * 359.75796 * 4 3 2 6 6 C 1.34670 * 108.01436 * 0.39661 * 5 4 3 7 7 C 1.50708 * 126.58718 * 179.87807 * 6 5 4 8 8 H 1.08996 * 110.65738 * 201.49492 * 7 6 5 9 9 C 1.54593 * 110.99114 * 78.33391 * 7 6 5 10 10 N 1.48119 * 103.42415 * 204.37541 * 9 7 6 11 11 C 1.34776 * 127.03360 * 219.28497 * 10 9 7 12 12 O 1.21616 * 119.99968 * 359.71350 * 11 10 9 13 13 C 1.43199 * 119.99978 * 179.70548 * 11 10 9 14 14 C 8.17768 * 93.29238 * 172.00305 * 2 1 3 15 15 C 9.53490 * 94.23277 * 175.58770 * 2 1 3 16 16 C 1.53006 * 109.47093 * 153.54140 * 15 14 13 17 17 C 1.52999 * 109.47112 * 33.54772 * 15 14 13 18 18 C 1.52997 * 109.47145 * 273.54189 * 15 14 13 19 19 C 1.47489 * 105.93069 * 39.02505 * 10 9 7 20 20 C 1.54003 * 107.08617 * 334.77788 * 19 10 9 21 21 H 1.08997 * 110.32598 * 120.19236 * 20 19 10 22 22 N 1.46493 * 110.32736 * 242.41717 * 20 19 10 23 23 C 1.36944 * 119.99769 * 273.54268 * 22 20 19 24 24 H 1.08002 * 119.99805 * 0.02562 * 23 22 20 25 25 C 1.38811 * 119.99827 * 179.97438 * 23 22 20 26 26 N 1.31614 * 120.00041 * 0.02562 * 25 23 22 27 27 Si 1.86800 * 119.99610 * 180.02562 * 25 23 22 28 28 H 1.48498 * 109.47354 * 0.02562 * 27 25 23 29 29 H 1.48501 * 109.47227 * 120.00549 * 27 25 23 30 30 H 1.48501 * 109.47162 * 240.00238 * 27 25 23 31 31 H 1.08993 * 109.47341 * 270.00225 * 1 2 3 32 32 H 1.09001 * 109.47002 * 30.00105 * 1 2 3 33 33 H 1.08995 * 109.46995 * 149.99918 * 1 2 3 34 34 H 1.08001 * 125.65295 * 0.02576 * 3 2 1 35 35 H 1.07990 * 125.99259 * 180.24758 * 5 4 3 36 36 H 1.08999 * 110.61709 * 85.86175 * 9 7 6 37 37 H 1.08998 * 110.54875 * 322.85508 * 9 7 6 38 38 H 1.09001 * 109.46801 * 300.00145 * 16 15 14 39 39 H 1.09001 * 109.46998 * 59.99741 * 16 15 14 40 40 H 1.09000 * 109.47050 * 180.02562 * 16 15 14 41 41 H 1.09000 * 109.47160 * 180.02562 * 17 15 14 42 42 H 1.09002 * 109.46719 * 299.99744 * 17 15 14 43 43 H 1.08993 * 109.47839 * 59.99586 * 17 15 14 44 44 H 1.09001 * 109.47375 * 299.99961 * 18 15 14 45 45 H 1.09002 * 109.46777 * 60.00516 * 18 15 14 46 46 H 1.09000 * 109.47140 * 179.97438 * 18 15 14 47 47 H 1.09002 * 109.90988 * 94.14151 * 19 10 9 48 48 H 1.09003 * 109.90860 * 215.22588 * 19 10 9 49 49 H 0.96994 * 120.00336 * 93.54647 * 22 20 19 50 50 H 0.97002 * 119.99892 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2663 1.0870 0.0000 4 7 3.5096 0.6902 0.0006 5 6 3.5461 -0.6505 0.0063 6 6 2.2772 -1.1017 0.0005 7 6 1.8363 -2.5428 0.0012 8 1 0.8183 -2.6337 -0.3777 9 6 1.9458 -3.1548 1.4166 10 7 2.0807 -4.6063 1.1542 11 6 1.5197 -5.6131 1.8528 12 8 0.8199 -5.3682 2.8168 13 6 1.7475 -6.9711 1.4599 14 6 1.9347 -8.0848 1.1358 15 6 2.1688 -9.4807 0.7315 16 6 3.4944 -9.5767 -0.0265 17 6 1.0280 -9.9473 -0.1750 18 6 2.2274 -10.3690 1.9758 19 6 2.9494 -4.7242 -0.0319 20 6 2.8088 -3.4133 -0.8279 21 1 3.7762 -2.9193 -0.9178 22 7 2.2475 -3.6810 -2.1543 23 6 3.0740 -4.0233 -3.1911 24 1 4.1396 -4.0962 -3.0308 25 6 2.5421 -4.2775 -4.4479 26 7 1.2436 -4.1891 -4.6430 27 14 3.6696 -4.7450 -5.8620 28 1 5.0755 -4.7757 -5.3849 29 1 3.2915 -6.0868 -6.3737 30 1 3.5379 -3.7446 -6.9516 31 1 -0.3633 0.0000 1.0276 32 1 -0.3633 0.8900 -0.5139 33 1 -0.3633 -0.8899 -0.5138 34 1 1.9335 2.1144 0.0004 35 1 4.4367 -1.2611 0.0118 36 1 1.0441 -2.9505 1.9939 37 1 2.8278 -2.7734 1.9311 38 1 3.4526 -8.9438 -0.9130 39 1 4.3071 -9.2442 0.6192 40 1 3.6675 -10.6103 -0.3263 41 1 1.2011 -10.9811 -0.4740 42 1 0.0837 -9.8789 0.3650 43 1 0.9862 -9.3145 -1.0615 44 1 3.0401 -10.0366 2.6217 45 1 1.2830 -10.3007 2.5158 46 1 2.4003 -11.4027 1.6765 47 1 3.9853 -4.8607 0.2787 48 1 2.6308 -5.5688 -0.6429 49 1 1.2905 -3.6159 -2.2981 50 1 0.8719 -4.3663 -5.5213 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001130985167.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:28 Heat of formation + Delta-G solvation = 74.292656 kcal Electronic energy + Delta-G solvation = -30303.884100 eV Core-core repulsion = 26333.289032 eV Total energy + Delta-G solvation = -3970.595068 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.06504 -41.13354 -39.00117 -38.46943 -35.89429 -34.90127 -34.02916 -33.10035 -32.33767 -29.33799 -28.94909 -28.23946 -28.20564 -27.77005 -26.44100 -25.28072 -23.44931 -22.89881 -21.73032 -21.28353 -20.63291 -19.22515 -18.88391 -18.05337 -17.53594 -17.01359 -16.72128 -16.62180 -16.42709 -15.79323 -15.38074 -15.25463 -15.23950 -15.17443 -14.79705 -14.63651 -14.44884 -13.79523 -13.75808 -13.63958 -13.45115 -13.36972 -13.34215 -13.21389 -12.96622 -12.75942 -12.69953 -12.64840 -12.64383 -12.29749 -12.28254 -12.14197 -11.94198 -11.77044 -11.60865 -11.33809 -11.24915 -11.05399 -10.89146 -10.44395 -9.97817 -9.30065 -9.00234 -7.95513 -5.24915 0.39918 1.06249 1.17379 1.47654 1.49603 1.58180 1.81225 1.99143 2.24401 2.37215 2.55165 2.87939 3.32492 3.52094 3.53508 3.69717 3.90324 3.92594 3.93801 3.94964 3.98296 4.03257 4.15841 4.24392 4.29055 4.42398 4.47725 4.55354 4.56265 4.66522 4.71528 4.72517 4.73920 4.81342 4.84929 4.91044 4.93546 4.93988 4.96754 5.05651 5.17179 5.25758 5.32404 5.36208 5.46623 5.54745 5.80092 6.14923 6.21569 6.25837 6.36597 6.80724 7.16274 7.32618 8.01163 8.25648 9.27661 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.007223 B = 0.004113 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3875.363904 B = 6805.230406 C = 9742.367907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.458 5.458 3 C 0.182 3.818 4 N -0.531 5.531 5 C -0.036 4.036 6 C -0.008 4.008 7 C -0.020 4.020 8 H 0.078 0.922 9 C 0.128 3.872 10 N -0.601 5.601 11 C 0.651 3.349 12 O -0.570 6.570 13 C -0.267 4.267 14 C -0.043 4.043 15 C 0.031 3.969 16 C -0.141 4.141 17 C -0.142 4.142 18 C -0.137 4.137 19 C 0.084 3.916 20 C 0.180 3.820 21 H 0.082 0.918 22 N -0.721 5.721 23 C -0.235 4.235 24 H 0.082 0.918 25 C -0.067 4.067 26 N -0.967 5.967 27 Si 0.963 3.037 28 H -0.263 1.263 29 H -0.294 1.294 30 H -0.299 1.299 31 H 0.096 0.904 32 H 0.113 0.887 33 H 0.074 0.926 34 H 0.241 0.759 35 H 0.169 0.831 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.048 0.952 39 H 0.063 0.937 40 H 0.097 0.903 41 H 0.099 0.901 42 H 0.058 0.942 43 H 0.046 0.954 44 H 0.060 0.940 45 H 0.057 0.943 46 H 0.098 0.902 47 H 0.084 0.916 48 H 0.064 0.936 49 H 0.372 0.628 50 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.431 -3.492 12.334 12.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.140 5.140 3 C -0.100 4.100 4 N -0.249 5.249 5 C -0.183 4.183 6 C -0.124 4.124 7 C -0.041 4.041 8 H 0.097 0.903 9 C 0.005 3.995 10 N -0.332 5.332 11 C 0.441 3.559 12 O -0.452 6.452 13 C -0.270 4.270 14 C -0.045 4.045 15 C 0.031 3.969 16 C -0.198 4.198 17 C -0.199 4.199 18 C -0.194 4.194 19 C -0.041 4.041 20 C 0.069 3.931 21 H 0.100 0.900 22 N -0.360 5.360 23 C -0.367 4.367 24 H 0.100 0.900 25 C -0.260 4.260 26 N -0.618 5.618 27 Si 0.793 3.207 28 H -0.187 1.187 29 H -0.222 1.222 30 H -0.226 1.226 31 H 0.115 0.885 32 H 0.132 0.868 33 H 0.093 0.907 34 H 0.257 0.743 35 H 0.187 0.813 36 H 0.105 0.895 37 H 0.115 0.885 38 H 0.067 0.933 39 H 0.082 0.918 40 H 0.116 0.884 41 H 0.118 0.882 42 H 0.077 0.923 43 H 0.065 0.935 44 H 0.079 0.921 45 H 0.076 0.924 46 H 0.116 0.884 47 H 0.102 0.898 48 H 0.082 0.918 49 H 0.204 0.796 50 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 0.724 -2.913 12.767 13.115 hybrid contribution -0.850 -0.494 -1.237 1.580 sum -0.125 -3.407 11.529 12.023 Atomic orbital electron populations 1.22312 0.74755 1.05688 1.04951 1.45444 1.08820 1.06061 1.53715 1.25605 0.85051 0.94672 1.04685 1.70222 1.21215 1.12148 1.21347 1.22125 0.96230 0.91258 1.08725 1.20662 0.91407 0.88812 1.11497 1.20610 1.00056 0.87940 0.95499 0.90349 1.22455 1.03771 0.77647 0.95577 1.48552 1.48429 1.06401 1.29793 1.14368 0.78685 0.81396 0.81414 1.90776 1.40613 1.84707 1.29064 1.20622 1.06841 0.93996 1.05543 1.23454 0.92835 0.94532 0.93711 1.18306 0.98265 0.82624 0.97714 1.21928 0.94033 1.04191 0.99614 1.21929 0.96575 1.03028 0.98335 1.21906 1.02607 0.99941 0.94897 1.23271 0.94032 1.01551 0.85253 1.21296 0.96489 0.91098 0.84202 0.90028 1.42555 1.06387 1.82215 1.04831 1.19628 0.91140 1.36910 0.88974 0.90021 1.25439 0.96927 1.03528 1.00088 1.69807 1.11629 1.57757 1.22574 0.85217 0.79007 0.76745 0.79706 1.18723 1.22177 1.22645 0.88507 0.86824 0.90719 0.74286 0.81332 0.89507 0.88476 0.93306 0.91824 0.88395 0.88185 0.92263 0.93497 0.92051 0.92381 0.88363 0.89788 0.91778 0.79564 0.94170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.12 11.00 127.77 1.41 2.52 16 2 N -0.46 -11.53 3.15 -537.89 -1.70 -13.23 16 3 C 0.18 4.52 12.56 180.26 2.26 6.78 16 4 N -0.53 -16.90 11.25 -200.32 -2.25 -19.15 16 5 C -0.04 -1.14 10.87 83.52 0.91 -0.24 16 6 C -0.01 -0.24 5.95 40.96 0.24 0.00 16 7 C -0.02 -0.61 3.04 -10.44 -0.03 -0.64 16 8 H 0.08 2.62 6.70 -2.39 -0.02 2.61 16 9 C 0.13 3.67 6.51 86.61 0.56 4.23 16 10 N -0.60 -19.88 3.29 -819.00 -2.70 -22.58 16 11 C 0.65 24.02 7.73 85.49 0.66 24.69 16 12 O -0.57 -23.56 17.29 -4.08 -0.07 -23.63 16 13 C -0.27 -9.23 12.60 30.01 0.38 -8.86 16 14 C -0.04 -1.25 11.77 31.12 0.37 -0.89 16 15 C 0.03 0.64 0.95 -53.99 -0.05 0.59 16 16 C -0.14 -2.58 8.43 71.98 0.61 -1.97 16 17 C -0.14 -2.72 8.43 71.98 0.61 -2.12 16 18 C -0.14 -2.09 8.43 71.98 0.61 -1.49 16 19 C 0.08 2.84 6.53 86.53 0.56 3.41 16 20 C 0.18 6.48 3.16 45.89 0.15 6.62 16 21 H 0.08 2.90 6.26 -2.39 -0.01 2.89 16 22 N -0.72 -33.54 5.08 -318.73 -1.62 -35.16 16 23 C -0.24 -12.12 9.97 84.03 0.84 -11.28 16 24 H 0.08 4.02 7.83 -2.91 -0.02 4.00 16 25 C -0.07 -3.68 5.50 84.86 0.47 -3.21 16 26 N -0.97 -56.87 13.06 21.65 0.28 -56.58 16 27 Si 0.96 44.40 29.55 68.60 2.03 46.43 16 28 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 29 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 30 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 31 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.07 1.53 7.13 -2.39 -0.02 1.51 16 34 H 0.24 3.61 8.06 -2.91 -0.02 3.58 16 35 H 0.17 5.03 7.20 -2.92 -0.02 5.01 16 36 H 0.09 2.46 7.85 -2.39 -0.02 2.44 16 37 H 0.10 2.49 8.04 -2.39 -0.02 2.47 16 38 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 45 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 46 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 47 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 48 H 0.06 2.50 7.49 -2.39 -0.02 2.48 16 49 H 0.37 19.05 7.54 -92.71 -0.70 18.35 16 50 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 Total: -1.00 -73.67 417.56 4.76 -68.90 By element: Atomic # 1 Polarization: 36.60 SS G_CDS: 0.25 Total: 36.85 kcal Atomic # 6 Polarization: 7.62 SS G_CDS: 10.54 Total: 18.16 kcal Atomic # 7 Polarization: -138.73 SS G_CDS: -7.98 Total: -146.71 kcal Atomic # 8 Polarization: -23.56 SS G_CDS: -0.07 Total: -23.63 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -73.67 4.76 -68.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130985167.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.196 kcal (2) G-P(sol) polarization free energy of solvation -73.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds