Wall clock time and date at job start Wed Apr 1 2020 02:51:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30105 * 124.94949 * 2 1 4 4 C 1.35785 * 109.64533 * 180.02562 * 3 2 1 5 5 C 1.39739 * 133.59990 * 180.02562 * 4 3 2 6 6 C 1.36601 * 119.88634 * 179.97438 * 5 4 3 7 7 C 1.38776 * 120.66615 * 0.02562 * 6 5 4 8 8 C 1.37854 * 120.45555 * 359.97438 * 7 6 5 9 9 C 1.38832 * 119.68517 * 359.71406 * 8 7 6 10 10 N 1.36035 * 124.95329 * 180.02562 * 2 1 3 11 11 C 1.46504 * 126.34698 * 359.97438 * 10 2 1 12 12 C 1.50707 * 109.47063 * 90.01739 * 11 10 2 13 13 O 1.21272 * 120.00150 * 0.02562 * 12 11 10 14 14 N 1.34779 * 119.99511 * 179.97438 * 12 11 10 15 15 C 1.46496 * 119.99550 * 180.02562 * 14 12 11 16 16 H 1.09004 * 109.47509 * 324.99724 * 15 14 12 17 17 C 1.52999 * 109.47410 * 85.00095 * 15 14 12 18 18 C 1.52998 * 109.47164 * 205.00192 * 15 14 12 19 19 C 1.52998 * 109.47384 * 64.99625 * 18 15 14 20 20 H 1.09003 * 109.47082 * 305.00221 * 19 18 15 21 21 C 1.52995 * 109.47443 * 185.00170 * 19 18 15 22 22 N 1.46498 * 109.47009 * 65.00045 * 19 18 15 23 23 C 1.36935 * 120.00239 * 204.99963 * 22 19 18 24 24 H 1.08004 * 120.00069 * 0.02562 * 23 22 19 25 25 C 1.38811 * 120.00368 * 180.02562 * 23 22 19 26 26 N 1.31624 * 119.99540 * 359.72375 * 25 23 22 27 27 Si 1.86800 * 120.00451 * 180.02562 * 25 23 22 28 28 H 1.48501 * 109.47364 * 179.72253 * 27 25 23 29 29 H 1.48508 * 109.46883 * 299.72375 * 27 25 23 30 30 H 1.48497 * 109.46870 * 59.72186 * 27 25 23 31 31 H 1.08999 * 109.46828 * 269.97694 * 1 2 3 32 32 H 1.08998 * 109.47021 * 29.97862 * 1 2 3 33 33 H 1.09003 * 109.47060 * 149.98000 * 1 2 3 34 34 H 1.08002 * 120.05596 * 359.93847 * 5 4 3 35 35 H 1.08000 * 119.66938 * 180.02562 * 6 5 4 36 36 H 1.08004 * 119.77315 * 179.97438 * 7 6 5 37 37 H 1.07997 * 120.15577 * 180.02562 * 8 7 6 38 38 H 1.09002 * 109.47099 * 330.01796 * 11 10 2 39 39 H 1.08994 * 109.46977 * 210.01687 * 11 10 2 40 40 H 0.96994 * 120.00258 * 0.02562 * 14 12 11 41 41 H 1.08996 * 109.47126 * 60.00048 * 17 15 14 42 42 H 1.09004 * 109.47346 * 179.97438 * 17 15 14 43 43 H 1.09003 * 109.47191 * 299.99550 * 17 15 14 44 44 H 1.08997 * 109.46877 * 305.00014 * 18 15 14 45 45 H 1.08999 * 109.47306 * 185.00166 * 18 15 14 46 46 H 1.09003 * 109.46933 * 60.00266 * 21 19 18 47 47 H 1.09004 * 109.47411 * 179.97438 * 21 19 18 48 48 H 1.08996 * 109.47329 * 300.00343 * 21 19 18 49 49 H 0.97004 * 119.99747 * 25.00702 * 22 19 18 50 50 H 0.97000 * 120.00481 * 0.27542 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2523 1.0664 0.0000 4 6 3.5620 0.7080 -0.0006 5 6 4.7586 1.4297 -0.0004 6 6 5.9532 0.7671 -0.0006 7 6 5.9931 -0.6201 -0.0016 8 6 4.8253 -1.3527 -0.0018 9 6 3.6020 -0.6964 0.0050 10 7 2.2864 -1.1150 -0.0005 11 6 1.8167 -2.5027 -0.0006 12 6 1.6555 -2.9784 -1.4215 13 8 1.9085 -2.2320 -2.3432 14 7 1.2311 -4.2337 -1.6678 15 6 1.0750 -4.6963 -3.0490 16 1 0.7321 -3.8704 -3.6723 17 6 2.4199 -5.2053 -3.5715 18 6 0.0483 -5.8297 -3.0943 19 6 -1.3252 -5.2901 -2.6904 20 1 -1.2537 -4.8071 -1.7158 21 6 -2.3251 -6.4456 -2.6147 22 7 -1.7792 -4.3159 -3.6859 23 6 -2.6763 -3.3434 -3.3329 24 1 -3.0489 -3.2943 -2.3204 25 6 -3.1069 -2.4207 -4.2763 26 7 -2.6486 -2.4772 -5.5089 27 14 -4.3301 -1.0937 -3.7946 28 1 -4.6212 -0.2375 -4.9725 29 1 -5.5867 -1.7274 -3.3205 30 1 -3.7548 -0.2613 -2.7077 31 1 -0.3633 -0.0004 1.0277 32 1 -0.3633 0.8902 -0.5135 33 1 -0.3633 -0.8898 -0.5142 34 1 4.7390 2.5096 -0.0006 35 1 6.8759 1.3284 0.0000 36 1 6.9456 -1.1292 -0.0021 37 1 4.8621 -2.4321 -0.0021 38 1 0.8572 -2.5615 0.5133 39 1 2.5432 -3.1322 0.5131 40 1 1.0291 -4.8308 -0.9306 41 1 2.7627 -6.0312 -2.9483 42 1 2.3036 -5.5499 -4.5991 43 1 3.1514 -4.3978 -3.5394 44 1 0.3465 -6.6179 -2.4030 45 1 -0.0029 -6.2334 -4.1054 46 1 -1.9874 -7.1704 -1.8739 47 1 -3.3036 -6.0612 -2.3265 48 1 -2.3967 -6.9286 -3.5892 49 1 -1.4444 -4.3599 -4.5953 50 1 -2.0131 -3.1661 -5.7591 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134344546.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:51:45 Heat of formation + Delta-G solvation = 43.153973 kcal Electronic energy + Delta-G solvation = -30880.120300 eV Core-core repulsion = 26908.174958 eV Total energy + Delta-G solvation = -3971.945343 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.23037 -39.73236 -37.51143 -37.00206 -34.76555 -34.18390 -32.45898 -31.45549 -31.09034 -30.32965 -28.38221 -27.72373 -27.40902 -26.46365 -23.48837 -22.45673 -22.13114 -21.74652 -20.70916 -20.01608 -19.87276 -17.70014 -17.42655 -17.28322 -17.21435 -15.87305 -15.38925 -15.31147 -15.25211 -14.79067 -14.34554 -14.15362 -13.96368 -13.73003 -13.59761 -13.33980 -13.26105 -13.12335 -13.00406 -12.67058 -12.43411 -12.22896 -12.12105 -11.93617 -11.79290 -11.78448 -11.54394 -11.47976 -11.11938 -10.79059 -10.64970 -10.57069 -10.53244 -10.18811 -9.97355 -9.90503 -9.74711 -9.17323 -8.94873 -8.91262 -8.28431 -8.07146 -7.03704 -6.08415 -3.08887 0.94478 1.49142 2.34537 2.60681 2.77508 3.27577 3.50497 3.54124 3.72056 3.88741 4.18130 4.39119 4.44047 4.60913 4.67337 4.73478 4.93218 4.94692 4.96959 5.23257 5.29144 5.30148 5.35711 5.40695 5.48566 5.50484 5.60290 5.60605 5.71929 5.73856 5.77690 5.84192 5.94144 5.95820 6.09601 6.12884 6.19212 6.27366 6.38581 6.41546 6.46664 6.49160 6.52445 6.61101 6.75136 6.86111 6.92593 7.06574 7.52319 7.78191 7.94055 8.25747 8.76014 9.22660 10.08991 10.23612 11.39658 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.010726 B = 0.003561 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2609.932268 B = 7861.050518 C = 9530.885901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.306 3.694 3 N -0.497 5.497 4 C 0.052 3.948 5 C -0.067 4.067 6 C -0.131 4.131 7 C -0.109 4.109 8 C -0.106 4.106 9 C 0.054 3.946 10 N -0.473 5.473 11 C 0.091 3.909 12 C 0.493 3.507 13 O -0.510 6.510 14 N -0.712 5.712 15 C 0.146 3.854 16 H 0.102 0.898 17 C -0.161 4.161 18 C -0.132 4.132 19 C 0.178 3.822 20 H 0.046 0.954 21 C -0.165 4.165 22 N -0.732 5.732 23 C -0.329 4.329 24 H 0.061 0.939 25 C -0.042 4.042 26 N -0.941 5.941 27 Si 1.074 2.926 28 H -0.285 1.285 29 H -0.296 1.296 30 H -0.295 1.295 31 H 0.088 0.912 32 H 0.100 0.900 33 H 0.085 0.915 34 H 0.127 0.873 35 H 0.126 0.874 36 H 0.127 0.873 37 H 0.117 0.883 38 H 0.123 0.877 39 H 0.116 0.884 40 H 0.395 0.605 41 H 0.051 0.949 42 H 0.064 0.936 43 H 0.055 0.945 44 H 0.063 0.937 45 H 0.075 0.925 46 H 0.035 0.965 47 H 0.053 0.947 48 H 0.044 0.956 49 H 0.365 0.635 50 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.297 -4.482 15.171 21.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.041 3.959 3 N -0.217 5.217 4 C -0.066 4.066 5 C -0.086 4.086 6 C -0.152 4.152 7 C -0.129 4.129 8 C -0.127 4.127 9 C -0.054 4.054 10 N -0.163 5.163 11 C -0.036 4.036 12 C 0.276 3.724 13 O -0.384 6.384 14 N -0.364 5.364 15 C 0.042 3.958 16 H 0.120 0.880 17 C -0.219 4.219 18 C -0.171 4.171 19 C 0.068 3.932 20 H 0.064 0.936 21 C -0.226 4.226 22 N -0.375 5.375 23 C -0.460 4.460 24 H 0.079 0.921 25 C -0.240 4.240 26 N -0.586 5.586 27 Si 0.906 3.094 28 H -0.210 1.210 29 H -0.224 1.224 30 H -0.222 1.222 31 H 0.107 0.893 32 H 0.119 0.881 33 H 0.104 0.896 34 H 0.145 0.855 35 H 0.144 0.856 36 H 0.144 0.856 37 H 0.135 0.865 38 H 0.141 0.859 39 H 0.134 0.866 40 H 0.229 0.771 41 H 0.070 0.930 42 H 0.083 0.917 43 H 0.074 0.926 44 H 0.082 0.918 45 H 0.093 0.907 46 H 0.054 0.946 47 H 0.072 0.928 48 H 0.063 0.937 49 H 0.199 0.801 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 13.200 -1.852 14.130 19.424 hybrid contribution 1.003 -2.750 0.565 2.981 sum 14.203 -4.602 14.695 20.948 Atomic orbital electron populations 1.20467 0.83990 1.05897 1.03846 1.23688 0.95816 0.80239 0.96155 1.70449 1.00797 1.27001 1.23441 1.19047 0.92176 0.90252 1.05100 1.19991 0.89212 0.99677 0.99766 1.20583 0.97319 0.94319 1.02950 1.20802 0.96992 0.94016 1.01067 1.19890 0.89242 0.99130 1.04454 1.18798 0.85057 0.95312 1.06216 1.44704 1.04810 1.05945 1.60825 1.21620 1.03780 0.81583 0.96638 1.20614 0.78299 0.82522 0.90942 1.90820 1.48175 1.54093 1.45323 1.45891 1.68047 1.13195 1.09311 1.21023 0.94206 0.98309 0.82241 0.88003 1.22181 0.97706 1.00845 1.01208 1.22198 0.95859 0.96547 1.02507 1.20137 0.89833 0.89583 0.93613 0.93625 1.22449 1.01383 0.98778 0.99960 1.42409 1.53040 1.33417 1.08629 1.19912 1.20430 1.08504 0.97175 0.92126 1.25675 1.03060 1.01162 0.94075 1.70881 1.33389 1.36238 1.18104 0.83321 0.75170 0.75835 0.75120 1.21027 1.22391 1.22215 0.89345 0.88149 0.89644 0.85519 0.85578 0.85555 0.86538 0.85873 0.86592 0.77113 0.92977 0.91655 0.92551 0.91828 0.90684 0.94609 0.92795 0.93652 0.80140 0.93407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.10 9.95 36.01 0.36 -0.74 16 2 C 0.31 4.84 7.85 -154.83 -1.22 3.62 16 3 N -0.50 -8.72 11.27 -8.23 -0.09 -8.81 16 4 C 0.05 0.85 7.23 -84.70 -0.61 0.24 16 5 C -0.07 -0.90 10.05 -39.61 -0.40 -1.30 16 6 C -0.13 -1.44 9.96 -39.97 -0.40 -1.84 16 7 C -0.11 -1.17 10.03 -39.52 -0.40 -1.57 16 8 C -0.11 -1.32 10.05 -39.50 -0.40 -1.72 16 9 C 0.05 0.82 6.87 -83.99 -0.58 0.24 16 10 N -0.47 -6.83 2.29 -112.43 -0.26 -7.09 16 11 C 0.09 0.99 6.21 -5.19 -0.03 0.96 16 12 C 0.49 7.30 7.86 -10.98 -0.09 7.21 16 13 O -0.51 -10.50 16.09 5.56 0.09 -10.41 16 14 N -0.71 -8.98 4.45 -53.81 -0.24 -9.22 16 15 C 0.15 2.18 2.52 -67.93 -0.17 2.01 16 16 H 0.10 2.08 7.06 -51.93 -0.37 1.71 16 17 C -0.16 -2.07 9.48 37.16 0.35 -1.72 16 18 C -0.13 -1.85 4.29 -26.73 -0.11 -1.96 16 19 C 0.18 3.16 2.84 -67.93 -0.19 2.97 16 20 H 0.05 0.81 7.56 -51.93 -0.39 0.42 16 21 C -0.17 -2.75 9.49 37.16 0.35 -2.39 16 22 N -0.73 -17.16 4.49 -53.43 -0.24 -17.40 16 23 C -0.33 -8.88 9.93 -15.06 -0.15 -9.03 16 24 H 0.06 1.61 7.83 -52.48 -0.41 1.20 16 25 C -0.04 -1.19 5.50 -17.43 -0.10 -1.29 16 26 N -0.94 -29.11 13.70 55.49 0.76 -28.35 16 27 Si 1.07 25.90 29.92 -169.99 -5.09 20.82 16 28 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 29 H -0.30 -6.79 7.11 56.52 0.40 -6.39 16 30 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 31 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 33 H 0.08 1.19 7.65 -51.93 -0.40 0.79 16 34 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 35 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 36 H 0.13 0.98 8.06 -52.48 -0.42 0.56 16 37 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 38 H 0.12 1.02 7.62 -51.93 -0.40 0.62 16 39 H 0.12 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.40 3.55 8.60 -40.82 -0.35 3.20 16 41 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 44 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 46 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 48 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 49 H 0.37 9.10 6.63 -40.82 -0.27 8.83 16 50 H 0.25 7.76 6.77 -40.82 -0.28 7.48 16 LS Contribution 415.17 15.07 6.26 6.26 Total: -1.00 -37.48 415.17 -10.58 -48.06 By element: Atomic # 1 Polarization: 20.46 SS G_CDS: -8.00 Total: 12.46 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: -3.77 Total: -6.31 kcal Atomic # 7 Polarization: -70.80 SS G_CDS: -0.07 Total: -70.87 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.09 Total: -10.41 kcal Atomic # 14 Polarization: 25.90 SS G_CDS: -5.09 Total: 20.82 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -37.48 -10.58 -48.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134344546.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.213 kcal (2) G-P(sol) polarization free energy of solvation -37.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds