Wall clock time and date at job start Wed Apr 1 2020 02:51:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30105 * 124.94949 * 2 1 4 4 C 1.35785 * 109.64533 * 180.02562 * 3 2 1 5 5 C 1.39739 * 133.59990 * 180.02562 * 4 3 2 6 6 C 1.36601 * 119.88634 * 179.97438 * 5 4 3 7 7 C 1.38776 * 120.66615 * 0.02562 * 6 5 4 8 8 C 1.37854 * 120.45555 * 359.97438 * 7 6 5 9 9 C 1.38832 * 119.68517 * 359.71406 * 8 7 6 10 10 N 1.36035 * 124.95329 * 180.02562 * 2 1 3 11 11 C 1.46504 * 126.34698 * 359.97438 * 10 2 1 12 12 C 1.50707 * 109.47063 * 90.01739 * 11 10 2 13 13 O 1.21272 * 120.00150 * 0.02562 * 12 11 10 14 14 N 1.34779 * 119.99511 * 179.97438 * 12 11 10 15 15 C 1.46496 * 119.99550 * 180.02562 * 14 12 11 16 16 H 1.09004 * 109.47509 * 324.99724 * 15 14 12 17 17 C 1.52999 * 109.47410 * 85.00095 * 15 14 12 18 18 C 1.52998 * 109.47164 * 205.00192 * 15 14 12 19 19 C 1.52998 * 109.47384 * 64.99625 * 18 15 14 20 20 H 1.09003 * 109.47082 * 305.00221 * 19 18 15 21 21 C 1.52995 * 109.47443 * 185.00170 * 19 18 15 22 22 N 1.46498 * 109.47009 * 65.00045 * 19 18 15 23 23 C 1.36935 * 120.00239 * 204.99963 * 22 19 18 24 24 H 1.08004 * 120.00069 * 0.02562 * 23 22 19 25 25 C 1.38811 * 120.00368 * 180.02562 * 23 22 19 26 26 N 1.31624 * 119.99540 * 359.72375 * 25 23 22 27 27 Si 1.86800 * 120.00451 * 180.02562 * 25 23 22 28 28 H 1.48501 * 109.47364 * 179.72253 * 27 25 23 29 29 H 1.48508 * 109.46883 * 299.72375 * 27 25 23 30 30 H 1.48497 * 109.46870 * 59.72186 * 27 25 23 31 31 H 1.08999 * 109.46828 * 269.97694 * 1 2 3 32 32 H 1.08998 * 109.47021 * 29.97862 * 1 2 3 33 33 H 1.09003 * 109.47060 * 149.98000 * 1 2 3 34 34 H 1.08002 * 120.05596 * 359.93847 * 5 4 3 35 35 H 1.08000 * 119.66938 * 180.02562 * 6 5 4 36 36 H 1.08004 * 119.77315 * 179.97438 * 7 6 5 37 37 H 1.07997 * 120.15577 * 180.02562 * 8 7 6 38 38 H 1.09002 * 109.47099 * 330.01796 * 11 10 2 39 39 H 1.08994 * 109.46977 * 210.01687 * 11 10 2 40 40 H 0.96994 * 120.00258 * 0.02562 * 14 12 11 41 41 H 1.08996 * 109.47126 * 60.00048 * 17 15 14 42 42 H 1.09004 * 109.47346 * 179.97438 * 17 15 14 43 43 H 1.09003 * 109.47191 * 299.99550 * 17 15 14 44 44 H 1.08997 * 109.46877 * 305.00014 * 18 15 14 45 45 H 1.08999 * 109.47306 * 185.00166 * 18 15 14 46 46 H 1.09003 * 109.46933 * 60.00266 * 21 19 18 47 47 H 1.09004 * 109.47411 * 179.97438 * 21 19 18 48 48 H 1.08996 * 109.47329 * 300.00343 * 21 19 18 49 49 H 0.97004 * 119.99747 * 25.00702 * 22 19 18 50 50 H 0.97000 * 120.00481 * 0.27542 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2523 1.0664 0.0000 4 6 3.5620 0.7080 -0.0006 5 6 4.7586 1.4297 -0.0004 6 6 5.9532 0.7671 -0.0006 7 6 5.9931 -0.6201 -0.0016 8 6 4.8253 -1.3527 -0.0018 9 6 3.6020 -0.6964 0.0050 10 7 2.2864 -1.1150 -0.0005 11 6 1.8167 -2.5027 -0.0006 12 6 1.6555 -2.9784 -1.4215 13 8 1.9085 -2.2320 -2.3432 14 7 1.2311 -4.2337 -1.6678 15 6 1.0750 -4.6963 -3.0490 16 1 0.7321 -3.8704 -3.6723 17 6 2.4199 -5.2053 -3.5715 18 6 0.0483 -5.8297 -3.0943 19 6 -1.3252 -5.2901 -2.6904 20 1 -1.2537 -4.8071 -1.7158 21 6 -2.3251 -6.4456 -2.6147 22 7 -1.7792 -4.3159 -3.6859 23 6 -2.6763 -3.3434 -3.3329 24 1 -3.0489 -3.2943 -2.3204 25 6 -3.1069 -2.4207 -4.2763 26 7 -2.6486 -2.4772 -5.5089 27 14 -4.3301 -1.0937 -3.7946 28 1 -4.6212 -0.2375 -4.9725 29 1 -5.5867 -1.7274 -3.3205 30 1 -3.7548 -0.2613 -2.7077 31 1 -0.3633 -0.0004 1.0277 32 1 -0.3633 0.8902 -0.5135 33 1 -0.3633 -0.8898 -0.5142 34 1 4.7390 2.5096 -0.0006 35 1 6.8759 1.3284 0.0000 36 1 6.9456 -1.1292 -0.0021 37 1 4.8621 -2.4321 -0.0021 38 1 0.8572 -2.5615 0.5133 39 1 2.5432 -3.1322 0.5131 40 1 1.0291 -4.8308 -0.9306 41 1 2.7627 -6.0312 -2.9483 42 1 2.3036 -5.5499 -4.5991 43 1 3.1514 -4.3978 -3.5394 44 1 0.3465 -6.6179 -2.4030 45 1 -0.0029 -6.2334 -4.1054 46 1 -1.9874 -7.1704 -1.8739 47 1 -3.3036 -6.0612 -2.3265 48 1 -2.3967 -6.9286 -3.5892 49 1 -1.4444 -4.3599 -4.5953 50 1 -2.0131 -3.1661 -5.7591 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134344546.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:51:43 Heat of formation + Delta-G solvation = 18.304113 kcal Electronic energy + Delta-G solvation = -30881.197871 eV Core-core repulsion = 26908.174958 eV Total energy + Delta-G solvation = -3973.022914 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.25824 -40.92276 -38.61695 -38.24976 -36.31293 -35.26436 -34.19639 -32.53290 -32.25427 -31.31294 -30.17764 -28.73376 -28.37682 -27.67200 -25.54347 -23.51397 -23.11789 -22.83830 -21.96996 -21.36928 -20.95057 -19.47087 -18.63491 -18.37734 -18.23196 -17.05239 -16.76435 -16.43306 -16.28966 -16.18239 -15.91396 -15.46306 -15.19071 -14.94314 -14.85566 -14.67219 -14.49616 -14.23289 -13.98336 -13.72820 -13.57872 -13.53069 -13.25956 -13.13873 -12.94463 -12.81836 -12.77299 -12.53011 -12.49676 -12.40685 -12.20615 -11.93136 -11.88428 -11.76336 -11.58593 -11.17467 -11.00002 -10.93791 -10.87743 -10.12031 -9.27129 -9.08737 -9.04820 -8.32891 -5.25183 -0.03918 0.52782 1.36907 1.49554 1.54187 1.64558 1.73679 1.79280 2.22212 2.72538 2.90174 3.16609 3.40711 3.46091 3.61658 3.63985 3.72765 3.87284 3.98215 4.03295 4.05792 4.13294 4.28260 4.29916 4.42384 4.44885 4.49102 4.53943 4.58848 4.65295 4.70430 4.73680 4.84894 4.85472 4.89807 4.93659 5.01904 5.12553 5.16925 5.24611 5.33050 5.45099 5.51516 5.54841 5.55130 5.57142 5.65831 5.96655 6.04576 6.50705 6.53872 6.84981 7.16197 7.21925 8.06476 8.19123 9.19347 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.010726 B = 0.003561 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2609.932268 B = 7861.050518 C = 9530.885901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.285 3.715 3 N -0.536 5.536 4 C 0.009 3.991 5 C -0.090 4.090 6 C -0.123 4.123 7 C -0.102 4.102 8 C -0.117 4.117 9 C 0.035 3.965 10 N -0.474 5.474 11 C 0.093 3.907 12 C 0.490 3.510 13 O -0.579 6.579 14 N -0.695 5.695 15 C 0.150 3.850 16 H 0.038 0.962 17 C -0.150 4.150 18 C -0.118 4.118 19 C 0.170 3.830 20 H 0.049 0.951 21 C -0.157 4.157 22 N -0.745 5.745 23 C -0.311 4.311 24 H 0.066 0.934 25 C -0.109 4.109 26 N -0.983 5.983 27 Si 1.115 2.885 28 H -0.301 1.301 29 H -0.274 1.274 30 H -0.278 1.278 31 H 0.122 0.878 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.131 0.869 35 H 0.161 0.839 36 H 0.165 0.835 37 H 0.140 0.860 38 H 0.153 0.847 39 H 0.160 0.840 40 H 0.418 0.582 41 H 0.088 0.912 42 H 0.065 0.935 43 H 0.033 0.967 44 H 0.112 0.888 45 H 0.071 0.929 46 H 0.080 0.920 47 H 0.028 0.972 48 H 0.037 0.963 49 H 0.353 0.647 50 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.911 -7.306 18.210 25.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.020 3.980 3 N -0.257 5.257 4 C -0.108 4.108 5 C -0.110 4.110 6 C -0.143 4.143 7 C -0.121 4.121 8 C -0.138 4.138 9 C -0.073 4.073 10 N -0.164 5.164 11 C -0.032 4.032 12 C 0.275 3.725 13 O -0.457 6.457 14 N -0.349 5.349 15 C 0.045 3.955 16 H 0.056 0.944 17 C -0.209 4.209 18 C -0.157 4.157 19 C 0.062 3.938 20 H 0.067 0.933 21 C -0.217 4.217 22 N -0.387 5.387 23 C -0.443 4.443 24 H 0.084 0.916 25 C -0.300 4.300 26 N -0.632 5.632 27 Si 0.941 3.059 28 H -0.228 1.228 29 H -0.200 1.200 30 H -0.204 1.204 31 H 0.140 0.860 32 H 0.106 0.894 33 H 0.093 0.907 34 H 0.149 0.851 35 H 0.178 0.822 36 H 0.182 0.818 37 H 0.158 0.842 38 H 0.171 0.829 39 H 0.177 0.823 40 H 0.256 0.744 41 H 0.107 0.893 42 H 0.084 0.916 43 H 0.053 0.947 44 H 0.131 0.869 45 H 0.089 0.911 46 H 0.099 0.901 47 H 0.047 0.953 48 H 0.056 0.944 49 H 0.185 0.815 50 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 14.813 -4.778 17.263 23.244 hybrid contribution 0.621 -1.950 -0.334 2.074 sum 15.434 -6.728 16.929 23.876 Atomic orbital electron populations 1.20487 0.82859 1.04622 1.05632 1.24052 0.96654 0.80773 0.96537 1.70348 1.01993 1.28537 1.24815 1.19572 0.92453 0.91805 1.06992 1.20301 0.89506 1.00245 1.00899 1.21029 0.97567 0.94962 1.00743 1.21329 0.98059 0.94002 0.98717 1.20309 0.88659 1.00549 1.04233 1.19210 0.86125 0.95180 1.06768 1.44819 1.04540 1.06741 1.60266 1.21947 1.06633 0.80484 0.94184 1.21340 0.76917 0.82298 0.91961 1.90804 1.51251 1.55946 1.47727 1.45722 1.66852 1.13090 1.09203 1.20765 0.95594 0.96525 0.82615 0.94351 1.22071 0.95704 1.01086 1.02005 1.22096 0.93006 0.96960 1.03601 1.20470 0.92139 0.88961 0.92243 0.93277 1.22308 0.99599 0.98829 1.00920 1.42664 1.52577 1.34143 1.09302 1.20256 1.19088 1.08037 0.96910 0.91559 1.26928 1.05241 1.03873 0.93957 1.70988 1.35258 1.37196 1.19737 0.82801 0.74438 0.73937 0.74749 1.22776 1.20029 1.20392 0.85968 0.89441 0.90708 0.85112 0.82191 0.81767 0.84180 0.82943 0.82267 0.74425 0.89344 0.91603 0.94742 0.86936 0.91051 0.90135 0.95277 0.94372 0.81524 0.94807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.09 9.95 71.24 0.71 -1.38 16 2 C 0.29 9.30 7.85 137.92 1.08 10.39 16 3 N -0.54 -19.82 11.27 -179.97 -2.03 -21.85 16 4 C 0.01 0.31 7.23 39.45 0.29 0.59 16 5 C -0.09 -2.44 10.05 22.25 0.22 -2.22 16 6 C -0.12 -2.46 9.96 22.02 0.22 -2.24 16 7 C -0.10 -1.89 10.03 22.31 0.22 -1.67 16 8 C -0.12 -2.66 10.05 22.32 0.22 -2.43 16 9 C 0.04 1.06 6.87 38.86 0.27 1.32 16 10 N -0.47 -13.55 2.29 -509.62 -1.17 -14.71 16 11 C 0.09 1.82 6.21 85.63 0.53 2.35 16 12 C 0.49 14.14 7.86 87.66 0.69 14.83 16 13 O -0.58 -24.84 16.09 -3.01 -0.05 -24.89 16 14 N -0.70 -16.07 4.45 -442.54 -1.97 -18.04 16 15 C 0.15 4.34 2.52 44.99 0.11 4.46 16 16 H 0.04 1.64 7.06 -2.39 -0.02 1.62 16 17 C -0.15 -3.63 9.48 71.98 0.68 -2.95 16 18 C -0.12 -2.98 4.29 30.59 0.13 -2.85 16 19 C 0.17 5.70 2.84 44.99 0.13 5.82 16 20 H 0.05 1.62 7.56 -2.39 -0.02 1.61 16 21 C -0.16 -4.77 9.49 71.98 0.68 -4.09 16 22 N -0.74 -35.46 4.49 -322.95 -1.45 -36.91 16 23 C -0.31 -16.98 9.93 84.03 0.83 -16.14 16 24 H 0.07 3.48 7.83 -2.91 -0.02 3.46 16 25 C -0.11 -6.41 5.50 84.86 0.47 -5.95 16 26 N -0.98 -63.48 13.70 21.65 0.30 -63.18 16 27 Si 1.11 53.23 29.92 68.60 2.05 55.28 16 28 H -0.30 -15.10 7.11 99.48 0.71 -14.39 16 29 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 30 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 31 H 0.12 2.32 8.14 -2.39 -0.02 2.30 16 32 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 33 H 0.07 2.13 7.65 -2.39 -0.02 2.11 16 34 H 0.13 3.21 8.06 -2.91 -0.02 3.19 16 35 H 0.16 2.02 8.06 -2.91 -0.02 1.99 16 36 H 0.16 1.77 8.06 -2.91 -0.02 1.74 16 37 H 0.14 2.40 8.06 -2.91 -0.02 2.37 16 38 H 0.15 2.06 7.62 -2.39 -0.02 2.04 16 39 H 0.16 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.42 5.75 8.60 -92.71 -0.80 4.95 16 41 H 0.09 1.49 8.14 -2.39 -0.02 1.48 16 42 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 44 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 45 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 46 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 47 H 0.03 1.01 8.14 -2.38 -0.02 0.99 16 48 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 49 H 0.35 18.38 6.63 -92.71 -0.61 17.76 16 50 H 0.24 15.58 6.77 -92.71 -0.63 14.95 16 Total: -1.00 -90.69 415.17 2.86 -87.83 By element: Atomic # 1 Polarization: 38.94 SS G_CDS: -0.32 Total: 38.62 kcal Atomic # 6 Polarization: -9.65 SS G_CDS: 7.50 Total: -2.15 kcal Atomic # 7 Polarization: -148.37 SS G_CDS: -6.32 Total: -154.69 kcal Atomic # 8 Polarization: -24.84 SS G_CDS: -0.05 Total: -24.89 kcal Atomic # 14 Polarization: 53.23 SS G_CDS: 2.05 Total: 55.28 kcal Total: -90.69 2.86 -87.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134344546.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.133 kcal (2) G-P(sol) polarization free energy of solvation -90.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds