Wall clock time and date at job start Wed Apr 1 2020 02:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30228 * 124.92365 * 2 1 4 4 C 1.35556 * 109.70275 * 180.02562 * 3 2 1 5 5 C 1.40012 * 133.39767 * 179.97438 * 4 3 2 6 6 C 1.36192 * 120.07690 * 180.02562 * 5 4 3 7 7 C 1.40170 * 120.51666 * 359.97438 * 6 5 4 8 8 C 1.47616 * 119.93422 * 179.97438 * 7 6 5 9 9 O 1.21586 * 119.99731 * 179.97438 * 8 7 6 10 10 N 1.34778 * 120.00030 * 359.97438 * 8 7 6 11 11 C 1.46495 * 119.99718 * 180.02562 * 10 8 7 12 12 H 1.08994 * 109.47210 * 324.99916 * 11 10 8 13 13 C 1.52999 * 109.47389 * 85.00140 * 11 10 8 14 14 C 1.53006 * 109.46696 * 204.99517 * 11 10 8 15 15 C 1.52997 * 109.46841 * 65.00499 * 14 11 10 16 16 H 1.09005 * 109.47159 * 54.99606 * 15 14 11 17 17 C 1.52999 * 109.47264 * 174.99605 * 15 14 11 18 18 N 1.46498 * 109.47167 * 294.99436 * 15 14 11 19 19 C 1.36935 * 120.00239 * 154.99975 * 18 15 14 20 20 H 1.08004 * 120.00069 * 0.02562 * 19 18 15 21 21 C 1.38811 * 120.00368 * 180.02562 * 19 18 15 22 22 N 1.31624 * 119.99540 * 359.72375 * 21 19 18 23 23 Si 1.86800 * 120.00451 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47364 * 179.72253 * 23 21 19 25 25 H 1.48508 * 109.46883 * 299.72375 * 23 21 19 26 26 H 1.48497 * 109.46870 * 59.72186 * 23 21 19 27 27 C 1.39371 * 120.12710 * 0.25285 * 7 6 5 28 28 C 1.38411 * 119.57531 * 359.51938 * 27 7 6 29 29 N 1.35852 * 124.92880 * 180.02562 * 2 1 3 30 30 C 1.46504 * 126.36333 * 359.97438 * 29 2 1 31 31 H 1.09003 * 109.48019 * 269.98196 * 1 2 3 32 32 H 1.09001 * 109.47570 * 29.98554 * 1 2 3 33 33 H 1.09007 * 109.47149 * 149.98201 * 1 2 3 34 34 H 1.08001 * 119.96470 * 0.02562 * 5 4 3 35 35 H 1.07999 * 119.74134 * 179.97438 * 6 5 4 36 36 H 0.96997 * 119.99976 * 359.97438 * 10 8 7 37 37 H 1.09007 * 109.47428 * 59.99518 * 13 11 10 38 38 H 1.09001 * 109.47632 * 179.97438 * 13 11 10 39 39 H 1.09000 * 109.47086 * 299.99744 * 13 11 10 40 40 H 1.08996 * 109.47489 * 304.99916 * 14 11 10 41 41 H 1.09001 * 109.46720 * 184.99882 * 14 11 10 42 42 H 1.08994 * 109.47214 * 179.97438 * 17 15 14 43 43 H 1.08994 * 109.47102 * 299.99987 * 17 15 14 44 44 H 1.09005 * 109.47033 * 59.99923 * 17 15 14 45 45 H 0.97004 * 119.99747 * 335.00715 * 18 15 14 46 46 H 0.97000 * 120.00481 * 0.27542 * 22 21 19 47 47 H 1.08001 * 120.20936 * 179.72412 * 27 7 6 48 48 H 1.09002 * 109.46565 * 269.99254 * 30 29 2 49 49 H 1.08997 * 109.47046 * 29.98621 * 30 29 2 50 50 H 1.09000 * 109.47446 * 149.99359 * 30 29 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2525 1.0678 0.0000 4 6 3.5605 0.7119 -0.0006 5 6 4.7558 1.4410 -0.0013 6 6 5.9522 0.7902 -0.0023 7 6 6.0005 -0.6106 -0.0021 8 6 7.3044 -1.3027 -0.0037 9 8 7.3476 -2.5178 -0.0031 10 7 8.4468 -0.5877 -0.0059 11 6 9.7408 -1.2746 -0.0082 12 1 9.6680 -2.1883 0.5816 13 6 10.1297 -1.6251 -1.4458 14 6 10.8053 -0.3587 0.5993 15 6 10.4821 -0.1091 2.0737 16 1 10.3835 -1.0636 2.5908 17 6 11.6105 0.7029 2.7128 18 7 9.2248 0.6354 2.1788 19 6 8.4684 0.5446 3.3166 20 1 8.7989 -0.0755 4.1368 21 6 7.2767 1.2496 3.4160 22 7 6.8766 2.0096 2.4186 23 14 6.2451 1.1263 4.9685 24 1 5.0337 1.9734 4.8264 25 1 5.8394 -0.2861 5.1823 26 1 7.0424 1.5937 6.1309 27 6 4.8199 -1.3513 -0.0061 28 6 3.6015 -0.6947 -0.0003 29 7 2.2848 -1.1138 -0.0005 30 6 1.8149 -2.5014 -0.0006 31 1 -0.3635 -0.0003 1.0276 32 1 -0.3634 0.8901 -0.5136 33 1 -0.3634 -0.8899 -0.5141 34 1 4.7291 2.5206 -0.0010 35 1 6.8709 1.3580 -0.0032 36 1 8.4123 0.3817 -0.0068 37 1 10.2024 -0.7113 -2.0356 38 1 11.0927 -2.1358 -1.4475 39 1 9.3713 -2.2775 -1.8786 40 1 10.8163 0.5906 0.0639 41 1 11.7830 -0.8336 0.5170 42 1 11.3800 0.8812 3.7631 43 1 12.5459 0.1491 2.6346 44 1 11.7091 1.6575 2.1958 45 1 8.9281 1.1926 1.4423 46 1 7.4124 2.0740 1.6126 47 1 4.8556 -2.4307 -0.0105 48 1 1.6989 -2.8457 1.0271 49 1 0.8551 -2.5600 -0.5139 50 1 2.5410 -3.1310 -0.5149 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135184356.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:51:48 Heat of formation + Delta-G solvation = 54.710604 kcal Electronic energy + Delta-G solvation = -31592.682858 eV Core-core repulsion = 27621.238648 eV Total energy + Delta-G solvation = -3971.444210 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.87118 -39.50548 -37.15900 -36.37160 -34.31523 -33.98982 -32.58604 -31.42574 -30.48685 -29.98099 -28.30091 -27.43796 -26.78158 -26.36942 -23.49255 -23.12834 -21.82940 -20.90937 -20.33308 -20.06342 -19.53021 -17.57658 -17.34552 -16.79413 -16.04306 -15.87154 -15.55605 -15.03360 -14.56199 -14.26878 -13.96157 -13.79800 -13.53891 -13.45089 -13.37587 -13.21224 -13.04620 -13.03204 -12.83870 -12.68764 -12.46951 -12.18299 -12.06061 -11.96872 -11.73388 -11.58090 -11.11514 -11.02545 -10.79867 -10.71899 -10.45884 -10.39887 -10.11248 -10.05306 -9.93528 -9.63358 -9.32205 -9.11711 -8.92843 -8.42751 -7.87676 -7.59818 -6.93718 -6.02330 -3.01696 1.09902 2.01571 2.72675 2.82012 3.55244 3.58730 3.62762 3.75954 3.81001 4.29836 4.52535 4.65377 4.69928 4.71429 5.00793 5.04083 5.17694 5.29484 5.32485 5.37451 5.40166 5.43265 5.47308 5.59500 5.62682 5.67846 5.78643 5.82174 5.84106 5.90386 5.92751 5.95540 6.08731 6.13004 6.18775 6.32412 6.37625 6.48459 6.52992 6.58035 6.76544 6.82026 6.92646 7.00887 7.04130 7.11355 7.27239 7.38677 7.86239 8.12963 8.18033 8.77539 8.84959 9.23774 10.08363 10.24372 11.41265 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.011224 B = 0.004300 C = 0.003472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2493.984958 B = 6510.043200 C = 8063.194940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.271 3.729 3 N -0.494 5.494 4 C 0.071 3.929 5 C -0.050 4.050 6 C -0.047 4.047 7 C -0.111 4.111 8 C 0.575 3.425 9 O -0.562 6.562 10 N -0.694 5.694 11 C 0.151 3.849 12 H 0.084 0.916 13 C -0.162 4.162 14 C -0.135 4.135 15 C 0.175 3.825 16 H 0.048 0.952 17 C -0.163 4.163 18 N -0.726 5.726 19 C -0.321 4.321 20 H 0.060 0.940 21 C -0.036 4.036 22 N -0.927 5.927 23 Si 1.068 2.932 24 H -0.285 1.285 25 H -0.300 1.300 26 H -0.299 1.299 27 C -0.056 4.056 28 C 0.027 3.973 29 N -0.494 5.494 30 C 0.080 3.920 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.075 0.925 34 H 0.131 0.869 35 H 0.129 0.871 36 H 0.399 0.601 37 H 0.053 0.947 38 H 0.060 0.940 39 H 0.058 0.942 40 H 0.063 0.937 41 H 0.075 0.925 42 H 0.053 0.947 43 H 0.036 0.964 44 H 0.043 0.957 45 H 0.359 0.641 46 H 0.248 0.752 47 H 0.126 0.874 48 H 0.073 0.927 49 H 0.084 0.916 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.279 -6.109 -9.058 12.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.006 3.994 3 N -0.215 5.215 4 C -0.047 4.047 5 C -0.070 4.070 6 C -0.068 4.068 7 C -0.116 4.116 8 C 0.363 3.637 9 O -0.443 6.443 10 N -0.346 5.346 11 C 0.046 3.954 12 H 0.102 0.898 13 C -0.221 4.221 14 C -0.174 4.174 15 C 0.065 3.935 16 H 0.067 0.933 17 C -0.223 4.223 18 N -0.370 5.370 19 C -0.452 4.452 20 H 0.078 0.922 21 C -0.234 4.234 22 N -0.573 5.573 23 Si 0.901 3.099 24 H -0.211 1.211 25 H -0.228 1.228 26 H -0.226 1.226 27 C -0.078 4.078 28 C -0.079 4.079 29 N -0.186 5.186 30 C -0.062 4.062 31 H 0.104 0.896 32 H 0.112 0.888 33 H 0.094 0.906 34 H 0.149 0.851 35 H 0.146 0.854 36 H 0.237 0.763 37 H 0.072 0.928 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.081 0.919 41 H 0.093 0.907 42 H 0.072 0.928 43 H 0.055 0.945 44 H 0.062 0.938 45 H 0.193 0.807 46 H 0.060 0.940 47 H 0.144 0.856 48 H 0.091 0.909 49 H 0.103 0.897 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -6.874 -5.873 -8.112 12.147 hybrid contribution 1.689 -0.793 -0.444 1.918 sum -5.185 -6.666 -8.556 12.022 Atomic orbital electron populations 1.20313 0.84740 1.04136 1.03932 1.23528 0.95541 0.80957 0.99324 1.70336 1.01335 1.27130 1.22712 1.19157 0.91823 0.90151 1.03597 1.19734 0.88395 0.99825 0.99004 1.20567 0.98017 0.92138 0.96119 1.19513 0.92322 0.93805 1.05942 1.17957 0.83970 0.86566 0.75203 1.90672 1.87899 1.13745 1.51969 1.45851 1.04833 1.10162 1.73777 1.20813 0.82594 0.96476 0.95555 0.89794 1.22209 1.01323 1.01452 0.97070 1.22238 0.97853 0.99381 0.97910 1.20209 0.86761 0.94672 0.91839 0.93348 1.22405 0.97964 1.00095 1.01825 1.42440 1.21461 1.55122 1.18027 1.19933 1.03872 1.26769 0.94585 0.92241 1.25409 0.96239 0.97452 1.04325 1.71088 1.40039 1.40690 1.05506 0.83372 0.76415 0.75495 0.74634 1.21062 1.22781 1.22642 1.19743 0.87992 0.99334 1.00697 1.18601 0.84841 0.95225 1.09263 1.44960 1.04722 1.07150 1.61765 1.21921 1.01209 0.79750 1.03359 0.89619 0.88790 0.90621 0.85147 0.85375 0.76342 0.92786 0.92076 0.92320 0.91870 0.90655 0.92815 0.94520 0.93758 0.80688 0.93960 0.85618 0.90884 0.89731 0.89809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.66 10.17 36.00 0.37 -0.29 16 2 C 0.27 4.05 7.85 -154.90 -1.22 2.84 16 3 N -0.49 -9.32 11.27 -8.19 -0.09 -9.41 16 4 C 0.07 1.44 7.23 -84.62 -0.61 0.83 16 5 C -0.05 -1.01 10.03 -39.65 -0.40 -1.41 16 6 C -0.05 -0.94 7.73 -39.59 -0.31 -1.24 16 7 C -0.11 -2.26 5.88 -104.92 -0.62 -2.88 16 8 C 0.57 11.90 7.73 -12.43 -0.10 11.80 16 9 O -0.56 -12.72 15.99 5.29 0.08 -12.63 16 10 N -0.69 -12.69 3.75 -54.82 -0.21 -12.89 16 11 C 0.15 2.45 2.57 -67.93 -0.17 2.27 16 12 H 0.08 1.56 7.58 -51.93 -0.39 1.16 16 13 C -0.16 -2.19 9.48 37.16 0.35 -1.84 16 14 C -0.14 -2.03 4.43 -26.73 -0.12 -2.15 16 15 C 0.17 3.29 2.89 -67.93 -0.20 3.10 16 16 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 17 C -0.16 -2.83 9.49 37.16 0.35 -2.48 16 18 N -0.73 -16.35 3.84 -53.43 -0.21 -16.55 16 19 C -0.32 -8.49 9.93 -15.06 -0.15 -8.64 16 20 H 0.06 1.63 7.83 -52.48 -0.41 1.22 16 21 C -0.04 -0.98 5.50 -17.43 -0.10 -1.08 16 22 N -0.93 -25.13 12.25 55.49 0.68 -24.45 16 23 Si 1.07 26.36 29.92 -169.99 -5.09 21.28 16 24 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 25 H -0.30 -7.39 7.11 56.52 0.40 -6.99 16 26 H -0.30 -7.12 7.11 56.52 0.40 -6.71 16 27 C -0.06 -1.08 9.58 -39.10 -0.37 -1.45 16 28 C 0.03 0.51 6.86 -84.00 -0.58 -0.07 16 29 N -0.49 -7.37 3.21 -118.55 -0.38 -7.75 16 30 C 0.08 0.77 10.96 59.85 0.66 1.43 16 31 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.08 0.47 7.01 -51.93 -0.36 0.10 16 34 H 0.13 2.57 8.06 -52.49 -0.42 2.14 16 35 H 0.13 2.51 4.70 -52.49 -0.25 2.26 16 36 H 0.40 7.20 4.51 -40.82 -0.18 7.01 16 37 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 45 H 0.36 8.01 4.54 -40.82 -0.19 7.82 16 46 H 0.25 6.38 4.76 -40.82 -0.19 6.18 16 47 H 0.13 2.29 7.64 -52.49 -0.40 1.89 16 48 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 49 H 0.08 0.54 6.99 -51.93 -0.36 0.17 16 50 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 399.24 15.07 6.02 6.02 Total: -1.00 -33.56 399.24 -9.84 -43.41 By element: Atomic # 1 Polarization: 21.70 SS G_CDS: -7.45 Total: 14.24 kcal Atomic # 6 Polarization: 1.95 SS G_CDS: -3.20 Total: -1.26 kcal Atomic # 7 Polarization: -70.85 SS G_CDS: -0.20 Total: -71.05 kcal Atomic # 8 Polarization: -12.72 SS G_CDS: 0.08 Total: -12.63 kcal Atomic # 14 Polarization: 26.36 SS G_CDS: -5.09 Total: 21.28 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.56 -9.84 -43.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135184356.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.120 kcal (2) G-P(sol) polarization free energy of solvation -33.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds